Junjie Chen

21 papers A* 2B 1Misc 1Journal 14Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
Directed evolution of antimicrobial peptides using multi-objective zeroth-order optimization.
Briefings Bioinform.
Xianliang Liu, Jiawei Luo, Xinyan Wang, Yang Zhang, Junjie Chen
2025 J jnl
HiPHD: Hierarchical Classification for Protein Remote Homology Detection by Incorporating Protein Sequential and Structural Information.
IEEE Trans. Comput. Biol. Bioinform.
Fuchuan Qu, Yijin Zhao, Tao Huang, Xinyan Wang, Jun Zhang, Junjie Chen
2025 J jnl
INAB: identify nucleic acid binding domain via cross-modal protein language models and multiscale computation.
Briefings Bioinform.
Jun Zhang, Hao Zeng, Junjie Chen, Zexuan Zhu
2025 B conf
Multi-modal Hierarchical Clustering Network for Cancer Subtype Identification of Multi-omics Data.
IJCNN
Fangfei Lin, Jie Xu, Yazhou Ren, Junjie Chen, Irwin King, Zenglin Xu
2025 J jnl
ProFun-SOM: Protein Function Prediction for Specific Ontology Based on Multiple Sequence Alignment Reconstruction.
IEEE Trans. Neural Networks Learn. Syst.
Jiangyi Shao, Junjie Chen, Bin Liu
2025 J jnl
iMFP-LG: Identify Novel Multi-functional Peptides Using Protein Language Models and Graph-based Deep Learning.
Genom. Proteom. Bioinform.
Jiawei Luo, Kejuan Zhao, Junjie Chen, Caihua Yang, Fuchuan Qu, Yumeng Liu, Xiaopeng Jin, Ke Yan, Yang Zhang, Bin Liu
2024 A* conf
Discriminative Forests Improve Generative Diversity for Generative Adversarial Networks.
AAAI
Junjie Chen, Jiahao Li, Chen Song, Bin Li, Qingcai Chen, Hongchang Gao, Wendy Hui Wang, Zenglin Xu, Xinghua Shi
2023 J jnl
CFAGO: cross-fusion of network and attributes based on attention mechanism for protein function prediction.
Bioinform.
Zhourun Wu, Mingyue Guo, Xiaopeng Jin, Junjie Chen, Bin Liu
2022 J jnl
ProtRe-CN: Protein Remote Homology Detection by Combining Classification Methods and Network Methods via Learning to Rank.
IEEE ACM Trans. Comput. Biol. Bioinform.
Jiangyi Shao, Junjie Chen, Bin Liu
2022 J jnl
iEnhancer-ELM: Improve Enhancer Identification by Extracting Multi-scale Contextual Information based on Enhancer Language Models.
CoRR
Jiahao Li, Zhourun Wu, Wenhao Lin, Jiawei Luo, Jun Zhang, Qingcai Chen, Junjie Chen
2021 Misc conf
Differential Privacy Protection Against Membership Inference Attack on Machine Learning for Genomic Data.
PSB
Junjie Chen, Wendy Hui Wang, Xinghua Shi
2021 A* conf
PAR-GAN: Improving the Generalization of Generative Adversarial Networks Against Membership Inference Attacks.
KDD
Junjie Chen, Wendy Hui Wang, Hongchang Gao, Xinghua Shi
2020 — conf
Population-scale Genomic Data Augmentation Based on Conditional Generative Adversarial Networks.
BCB
Junjie Chen, Mohammad Erfan Mowlaei, Xinghua Shi
2019 — conf
A Sparse Convolutional Predictor with Denoising Autoencoders for Phenotype Prediction.
BCB
Junjie Chen, Xinghua Shi
2019 J jnl
Protein Remote Homology Detection and Fold Recognition Based on Sequence-Order Frequency Matrix.
IEEE ACM Trans. Comput. Biol. Bioinform.
Bin Liu, Junjie Chen, Mingyue Guo, Xiaolong Wang
2018 J jnl
A comprehensive review and comparison of different computational methods for protein remote homology detection.
Briefings Bioinform.
Junjie Chen, Mingyue Guo, Xiaolong Wang, Bin Liu
2017 J jnl
ProtDec-LTR2.0: an improved method for protein remote homology detection by combining pseudo protein and supervised Learning to Rank.
Bioinform.
Junjie Chen, Mingyue Guo, Shumin Li, Bin Liu
2017 J jnl
Protein remote homology detection based on bidirectional long short-term memory.
BMC Bioinform.
Shumin Li, Junjie Chen, Bin Liu
2017 — conf
SOFM-Top: Protein Remote Homology Detection and Fold Recognition Based on Sequence-Order Frequency Matrix.
ICIC (2)
Junjie Chen, Mingyue Guo, Xiaolong Wang, Bin Liu
2015 J jnl
Application of learning to rank to protein remote homology detection.
Bioinform.
Bin Liu, Junjie Chen, Xiaolong Wang
2015 J jnl
Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences.
Nucleic Acids Res.
Bin Liu, Fule Liu, Xiaolong Wang, Junjie Chen, Longyun Fang, Kuo-Chen Chou