Junichi Higo - RankMe

21 papers B 1Journal 19Unranked 1

Year	Rank	Type	Title / Venue / Authors
2021	J	`jnl`	Flexibility and Cell Permeability of Cyclic Ras-Inhibitor Peptides Revealed by the Coupled Nosé-Hoover Equation. J. Chem. Inf. Model. Kei Moritsugu, Koh Takeuchi, Narutoshi Kamiya, Junichi Higo, Isao Yasumatsu, Yoshifumi Fukunishi, Ikuo Fukuda
2021	J	`jnl`	Generalized-ensemble method study: A helix-mimetic compound inhibits protein-protein interaction by long-range and short-range intermolecular interactions. J. Comput. Chem. Junichi Higo, Hajime Takashima, Yoshifumi Fukunishi, Atsushi Yoshimori
2020	J	`jnl`	Molecular Interaction Mechanism of a 14-3-3 Protein with a Phosphorylated Peptide Elucidated by Enhanced Conformational Sampling. J. Chem. Inf. Model. Junichi Higo, Takeshi Kawabata, Ayumi Kusaka, Kota Kasahara, Narutoshi Kamiya, Ikuo Fukuda, Kentaro Mori, Yutaka Hata, Yoshifumi Fukunishi, Haruki Nakamura
2019	J	`jnl`	Multidimensional virtual-system coupled canonical molecular dynamics to compute free-energy landscapes of peptide multimer assembly. J. Comput. Chem. Tomonori Hayami, Junichi Higo, Haruki Nakamura, Kota Kasahara
2018	J	`jnl`	Molecular dynamics coupled with a virtual system for effective conformational sampling. J. Comput. Chem. Tomonori Hayami, Kota Kasahara, Haruki Nakamura, Junichi Higo
2016	J	`jnl`	Variation of free-energy landscape of the p53 C-terminal domain induced by acetylation: Enhanced conformational sampling. J. Comput. Chem. Shinji Iida, Tadaaki Mashimo, Takashi Kurosawa, Hironobu Hojo, Hiroya Muta, Yuji Goto, Yoshifumi Fukunishi, Haruki Nakamura, Junichi Higo
2015	J	`jnl`	Computational Study of Drug Binding Affinity to Influenza A Neuraminidase Using Smooth Reaction Path Generation (SRPG) Method. J. Chem. Inf. Model. Hung Nguyen, Tien Tran, Yoshifumi Fukunishi, Junichi Higo, Haruki Nakamura, Ly Le
2015	J	`jnl`	Virtual-system-coupled adaptive umbrella sampling to compute free-energy landscape for flexible molecular docking. J. Comput. Chem. Junichi Higo, Bhaskar DasGupta, Tadaaki Mashimo, Kota Kasahara, Yoshifumi Fukunishi, Haruki Nakamura
2011	J	`jnl`	Theory for trivial trajectory parallelization of multicanonical molecular dynamics and application to a polypeptide in water. J. Comput. Chem. Jinzen Ikebe, Koji Umezawa, Narutoshi Kamiya, Takanori Sugihara, Yasushige Yonezawa, Yu Takano, Haruki Nakamura, Junichi Higo
2005	—	`conf`	Sampling of Protein Conformations with Computers to Predict the Native Structure. ISHPC Junichi Higo
2004	J	`jnl`	On the model granularity to simulate protein dynamics: A biological physics view on biomolecular computing. Nat. Comput. Mitsunori Takano, Junichi Higo, Hironori K. Nakamura, Masaki Sasai
2003	B	`conf`	Molecular dynamics simulation using coarse-grained model to study protein function and beyond. IEEE Congress on Evolutionary Computation Mitsunori Takano, Hironori K. Nakamura, Junichi Higo, Masaki Sasai
2003	J	`jnl`	beta-Hairpins, alpha-helices, and the intermediates among the secondary structures in the energy landscape of a peptide from a distal beta-hairpin of SH3 domain. J. Comput. Chem. Kazuyoshi Ikeda, Oxana V. Galzitskaya, Haruki Nakamura, Junichi Higo
2002	J	`jnl`	Calibration of force-field dependency in free energy landscapes of peptide conformations by quantum chemical calculations. J. Comput. Chem. Satoshi Ono, Masataka Kuroda, Junichi Higo, Nobuyuki Nakajima, Haruki Nakamura
2002	J	`jnl`	Hydration structure of human lysozyme investigated by molecular dynamics simulation and cryogenic X-ray crystal structure analyses: On the correlation between crystal water sites, solvent density, and solvent dipole. J. Comput. Chem. Junichi Higo, Masayoshi Nakasako
2001	J	`jnl`	Collective motions of myosin head derived from backbone molecular dynamics and combination with X-ray solution scattering data. J. Comput. Chem. Junichi Higo, Yasunobu Sugimoto, Katsuzo Wakabayashi, Haruki Nakamura
2001	J	`jnl`	Repeated-annealing sampling combined with multicanonical algorithm for conformational sampling of bio-molecules. J. Comput. Chem. Narutoshi Kamiya, Junichi Higo
2000	J	`jnl`	Peptide free-energy profile is strongly dependent on the force field: Comparison of C96 and AMBER95. J. Comput. Chem. Satoshi Ono, Nobuyuki Nakajima, Junichi Higo, Haruki Nakamura
1996	J	`jnl`	New implementation of and the modeling by the extended simulated annealing process to structures of T4 lysozyme mutants at the 86th residue. J. Comput. Chem. Shigeru Endo, Junichi Higo, Kuniaki Nagayama, Hiroshi Wako
1994	J	`jnl`	Application of a High-Performance, Special-Purpose Computer, GRAPE-2A, to Molecular Dynamics. J. Comput. Chem. Junichi Higo, Shigeru Endo, Kuniaki Nagayama, Tomoyoshi Ito, Toshiyuki Fukushige, Toshikazu Ebisuzaki, Daiichiro Sugimoto, Hiroo Miyagawa, Kunihiro Kitamura, Junichiro Makino
1994	J	`jnl`	Stability of Two-Dimensional Crystalline Aggregates of a PRotein Studied by Molecular Dynamics. J. Comput. Chem. Junichi Higo, Mariko Yamaki, Michiru Hogyoku, Takuya Takahashi, Shigeru Endo, Kuniaki Nagayama