Junguk Hur

25 papers Journal 19Unranked 6
YearRankTypeTitle / Venue / Authors
2025 J jnl
Cancer Vaccine Adjuvant Name Recognition from Biomedical Literature using Large Language Models.
CoRR
Hasin Rehana, Jie Zheng, Leo Yeh, Benu Bansal, Nur Bengisu Çam, Christianah Jemiyo, Brett A. McGregor, Arzucan Özgür, Yongqun He, Junguk Hur
2024 — conf
Nested Named Entity Recognition using Multilayer BERT-based Model.
CLEF (Working Notes)
Hasin Rehana, Benu Bansal, Nur Bengisu Çam, Jie Zheng, Yongqun He, Arzucan Özgür, Junguk Hur
2023 J jnl
Evaluation of GPT and BERT-based models on identifying protein-protein interactions in biomedical text.
CoRR
Hasin Rehana, Nur Bengisu Çam, Mert Basmaci, Yongqun He, Arzucan Özgür, Junguk Hur
2022 J jnl
A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology.
J. Biomed. Semant.
Yongqun He, Hong Yu, Anthony Huffman, Asiyah Yu Lin, Darren A. Natale, John Beverley, Ling Zheng, Yehoshua Perl, Zhigang Wang, Yingtong Liu, Edison Ong, Yang Wang, Philip Huang, Long Tran, Jinyang Du, Zalan Shah, Easheta Shah, Roshan Desai, Hsin-Hui Huang, Yujia Tian, Eric Merrell, William D. Duncan, Sivaram Arabandi, Lynn M. Schriml, Jie Zheng, Anna Maria Masci, Liwei Wang, Hongfang Liu, Fatima Zohra Smaili, Robert Hoehndorf, Zoë May Pendlington, Paola Roncaglia, Xianwei Ye, Jiangan Xie, Yi-Wei Tang, Xiaolin Yang, Suyuan Peng, Luxia Zhang, Luonan Chen, Junguk Hur, Gilbert S. Omenn, Brian D. Athey, Barry Smith
2022 J jnl
COVID-19 vaccine design using reverse and structural vaccinology, ontology-based literature mining and machine learning.
Briefings Bioinform.
Anthony Huffman, Edison Ong, Junguk Hur, Adonis D'mello, Hervé Tettelin, Yongqun He
2021 — conf
GBMPSO: Hybrid Gradient Boosting Machines with Particle Swarm Optimization in Cell Segmentation Data.
SSCI
Temidayo Adeluwa, Eunjin Kim, Junguk Hur
2020 — conf
CIDO: The Community-Based Coronavirus Infectious Disease Ontology.
ICBO/ODLS
Yongqun He, Hong Yu, Edison Ong, Yang Wang, Yingtong Liu, Anthony Huffman, Hsin-Hui Huang, John Beverley, Asiyah Yu Lin, William D. Duncan, Sivaram Arabandi, Jiangan Xie, Junguk Hur, Xiaolin Yang, Luonan Chen, Gilbert S. Omenn, Brian D. Athey, Barry Smith
2019 J jnl
A 2018 workshop: vaccine and drug ontology studies (VDOS 2018).
BMC Bioinform.
Junguk Hur, Cui Tao, Yongqun He
2019 J jnl
Correction to: Pathway crosstalk perturbation network modeling for identification of connectivity changes induced by diabetic neuropathy and pioglitazone.
BMC Syst. Biol.
Guillermo de Anda-Jáuregui, Kai Guo, Brett A. McGregor, Eva L. Feldman, Junguk Hur
2019 J jnl
Identification of Casiopeina II-gly secondary targets through a systems pharmacology approach.
Comput. Biol. Chem.
Guillermo de Anda-Jáuregui, Jesús Espinal-Enríquez, Junguk Hur, Sergio Antonio Alcalá-Corona, Lena Ruiz-Azuara, Enrique Hernández-Lemus
2019 J jnl
Machine learning-based identification and rule-based normalization of adverse drug reactions in drug labels.
BMC Bioinform.
Mert Tiftikci, Arzucan Özgür, Yongqun He, Junguk Hur
2019 J jnl
Pathway crosstalk perturbation network modeling for identification of connectivity changes induced by diabetic neuropathy and pioglitazone.
BMC Syst. Biol.
Guillermo de Anda-Jáuregui, Kai Guo, Brett A. McGregor, Eva L. Feldman, Junguk Hur
2018 J jnl
Ontology-based literature mining and class effect analysis of adverse drug reactions associated with neuropathy-inducing drugs.
J. Biomed. Semant.
Junguk Hur, Arzucan Özgür, Yongqun He
2017 — conf
Extracting Adverse Drug Reactions using Deep Learning and Dictionary Based Approaches.
TAC
Mert Tiftikci, Arzucan Özgür, Yongqun He, Junguk Hur
2017 J jnl
Ontology-based literature mining of E. coli vaccine-associated gene interaction networks.
J. Biomed. Semant.
Junguk Hur, Arzucan Özgür, Yongqun He
2016 — conf
Ignet: A Centrality and INO-based Web System for Analyzing and Visualizing Literature-mined Networks.
ICBO/BioCreative
Arzucan Özgür, Junguk Hur, Zuoshuang Xiang, Edison Ong, Dragomir R. Radev, Yongqun He
2016 J jnl
Ontology-based collection, representation and analysis of drug-associated neuropathy adverse events.
J. Biomed. Semant.
Abra Guo, Rebecca Racz, Junguk Hur, Yu Lin, Zuoshuang Xiang, Lili Zhao, Jordan Rinder, Guoqian Jiang, Qian Zhu, Yongqun He
2016 J jnl
The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature.
BioData Min.
Arzucan Özgür, Junguk Hur, Yongqun He
2015 J jnl
Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions.
J. Biomed. Semant.
Junguk Hur, Arzucan Özgür, Zuoshuang Xiang, Yongqun He
2015 — conf
Extension of the Interaction Network Ontology for Literature Mining of Gene-gene Interaction Networks from Sentences with Multiple Interaction Keywords.
BDM2I@ISWC
Arzucan Özgür, Junguk Hur, Yongqun He
2015 J jnl
GLASS: a comprehensive database for experimentally validated GPCR-ligand associations.
Bioinform.
Wallace K. B. Chan, Hongjiu Zhang, Jianyi Yang, Jeffrey R. Brender, Junguk Hur, Arzucan Özgür, Yang Zhang
2014 J jnl
Updates on the web-based VIOLIN vaccine database and analysis system.
Nucleic Acids Res.
Yongqun He, Rebecca Racz, Samantha Sayers, Yu Lin, Thomas E. Todd, Junguk Hur, Xinna Li, Mukti Patel, Boyang Zhao, Monica Chung, Joseph Ostrow, Andrew Sylora, Priya Dungarani, Guerlain Ulysse, Kanika Kochhar, Boris Vidri, Kelsey Strait, George W. Jourdian, Zuoshuang Xiang
2012 J jnl
Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining.
J. Biomed. Semant.
Junguk Hur, Arzucan Özgür, Zuoshuang Xiang, Yongqun He
2009 J jnl
SciMiner: web-based literature mining tool for target identification and functional enrichment analysis.
Bioinform.
Junguk Hur, Adam D. Schuyler, David J. States, Eva L. Feldman
2004 J jnl
A graph-theoretic modeling on GO space for biological interpretation of gene clusters.
Bioinform.
Sung Geun Lee, Junguk Hur, Yang Seok Kim