Junbo Duan

37 papers Journal 29Unranked 8
YearRankTypeTitle / Venue / Authors
2025 J jnl
MSigSeg: An R package for multiple signals segmentation.
Comput. Methods Programs Biomed.
Xuanyu Liu, Junbo Duan, Dian Gong
2024 J jnl
LoRA-TV: read depth profile-based clustering of tumor cells in single-cell sequencing.
Briefings Bioinform.
Junbo Duan, Xinrui Zhao, Xiaoming Wu
2024 J jnl
On the core segmentation algorithms of copy number variation detection tools.
Briefings Bioinform.
Yibo Zhang, Wenyu Liu, Junbo Duan
2023 J jnl
Comparative study of non-convex penalties and related algorithms in compressed sensing.
Digit. Signal Process.
Fanding Xu, Junbo Duan, Wenyu Liu
2022 J jnl
Impact of BRDF Spatiotemporal Smoothing on Land Surface Albedo Estimation.
Remote. Sens.
Jian Yang, Yanmin Shuai, Junbo Duan, Donghui Xie, Qingling Zhang, Ruishan Zhao
2021 J jnl
CNV_IFTV: An Isolation Forest and Total Variation-Based Detection of CNVs from Short-Read Sequencing Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiguo Yuan, Jiaao Yu, Jianing Xi, Liying Yang, Junliang Shang, Zhe Li, Junbo Duan
2021 J jnl
ERINS: Novel Sequence Insertion Detection by Constructing an Extended Reference.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiguo Yuan, Xiangyan Xu, Haiyong Zhao, Junbo Duan
2021 J jnl
HOPS: A Fast Algorithm for Segmenting Piecewise Polynomials of Arbitrary Orders.
IEEE Access
Junbo Duan, Qing Wang, Yu-Ping Wang
2021 J jnl
Smoothing of Time-Varying Graph With the Generalized LASSO.
IEEE Access
Wenyu Liu, Hao Yan, Qing Wang, Nan Hu, Ni Liu, Fanding Xu, Junbo Duan
2020 J jnl
CONDEL: Detecting Copy Number Variation and Genotyping Deletion Zygosity from Single Tumor Samples Using Sequence Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiguo Yuan, Jun Bai, Junying Zhang, Liying Yang, Junbo Duan, Yaoyao Li, Meihong Gao
2020 J jnl
CRSCNV: A Cross-Model-Based Statistical Approach to Detect Copy Number Variations in Sequence Data.
IEEE Access
Guojun Liu, Xiguo Yuan, Junying Zhang, Haiyong Zhao, Junping Li, Junbo Duan
2020 J jnl
Comparative study of whole exome sequencing-based copy number variation detection tools.
BMC Bioinform.
Lanling Zhao, Han Liu, Xiguo Yuan, Kun Gao, Junbo Duan
2020 J jnl
SVSR: A Program to Simulate Structural Variations and Generate Sequencing Reads for Multiple Platforms.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiguo Yuan, Meihong Gao, Jun Bai, Junbo Duan
2019 J jnl
A Joint Least Squares and Least Absolute Deviation Model.
IEEE Signal Process. Lett.
Junbo Duan, Jérôme Idier, Yu-Ping Wang, Mingxi Wan
2019 J jnl
A Parallelizable Framework for Segmenting Piecewise Signals.
IEEE Access
Junbo Duan, Charles Soussen, David Brie, Jérôme Idier, Yu-Ping Wang, Mingxi Wan
2016 J jnl
A Sparse Model Based Detection of Copy Number Variations From Exome Sequencing Data.
IEEE Trans. Biomed. Eng.
Junbo Duan, Mingxi Wan, Hong-Wen Deng, Yu-Ping Wang
2016 J jnl
Generalized LASSO with under-determined regularization matrices.
Signal Process.
Junbo Duan, Charles Soussen, David Brie, Jérôme Idier, Mingxi Wan, Yu-Ping Wang
2015 — conf
An optimal method to segment piecewise poisson distributed signals with application to sequencing data.
EMBC
Junbo Duan, Charles Soussen, David Brie, Jérôme Idier, Yu-Ping Wang, Mingxi Wan
2015 J jnl
Homotopy Based Algorithms for ℓ
IEEE Trans. Signal Process.
Charles Soussen, Jérôme Idier, Junbo Duan, David Brie
2014 J jnl
Common Copy Number Variation Detection From Multiple Sequenced Samples.
IEEE Trans. Biomed. Eng.
Junbo Duan, Hong-Wen Deng, Yu-Ping Wang
2014 J jnl
Population clustering based on copy number variations detected from next generation sequencing data.
J. Bioinform. Comput. Biol.
Junbo Duan, Ji-Gang Zhang, Mingxi Wan, Hong-Wen Deng, Yu-Ping Wang
2014 J jnl
Sparse representation based biomarker selection for schizophrenia with integrated analysis of fMRI and SNPs.
NeuroImage
Hongbao Cao, Junbo Duan, Dongdong Lin, Yin Yao Shugart, Vince D. Calhoun, Yu-Ping Wang
2014 J jnl
ℓ
CoRR
Charles Soussen, Jérôme Idier, Junbo Duan, David Brie
2013 J jnl
CNV-TV: A robust method to discover copy number variation from short sequencing reads.
BMC Bioinform.
Junbo Duan, Ji-Gang Zhang, Hong-Wen Deng, Yu-Ping Wang
2013 — conf
Modeling exome sequencing data with generalized Gaussian distribution with application to copy number variation detection.
BIBM
Junbo Duan, Mingxi Wan, Hong-Wen Deng, Yu-Ping Wang
2013 — conf
Sparse representation based biomarker selection for schizophrenia with integrated analysis of fMRI and SNP data.
ISBI
Hongbao Cao, Junbo Duan, Dongdong Lin, Vincent D. Calhoun, Yu-Ping Wang
2013 J jnl
Subtyping glioblastoma by combining miRNA and mRNA expression data using compressed sensing-based approach.
EURASIP J. Bioinform. Syst. Biol.
Wenlong Tang, Junbo Duan, Ji-Gang Zhang, Yu-Ping Wang
2012 — conf
Bio marker identification for diagnosis of schizophrenia with integrated analysis of fMRI and SNPs.
BIBM
Hongbao Cao, Dongdong Lin, Junbo Duan, Yu-Ping Wang, Vince D. Calhoun
2012 — conf
Copy number variation estimation from multiple next-generation sequencing samples.
BCB
Junbo Duan, Ji-Gang Zhang, Hongbao Cao, Hong-Wen Deng, Yu-Ping Wang
2012 — conf
Detection of common copy number variation with application to population clustering from next generation sequencing data.
EMBC
Junbo Duan, Ji-Gang Zhang, Hong-Wen Deng, Yu-Ping Wang
2012 J jnl
On LARS/Homotopy Equivalence Conditions for Over-Determined LASSO.
IEEE Signal Process. Lett.
Junbo Duan, Charles Soussen, David Brie, Jérôme Idier, Yu-Ping Wang
2012 J jnl
Sparse Representation Based Clustering for Integrated Analysis of Gene Copy Number Variation and Gene Expression Date.
Int. J. Comput. Their Appl.
Hongbao Cao, Junbo Duan, Dongdong Lin, Yu-Ping Wang
2011 J jnl
A Compressed Sensing Based Approach for Subtyping of Leukemia from gene Expression Data.
J. Bioinform. Comput. Biol.
Wenlong Tang, Hongbao Cao, Junbo Duan, Yu-Ping Wang
2011 J jnl
A sufficient condition on monotonic increase of the number of nonzero entry in the optimizer of L1 norm penalized least-square problem.
CoRR
Junbo Duan, Charles Soussen, David Brie, Jérôme Idier, Yu-Ping Wang
2011 — conf
Classifying six glioma subtypes from combined gene expression and CNVs data based on compressive sensing approach.
BIBM Workshops
Wenlong Tang, Hongbao Cao, Ji-Gang Zhang, Junbo Duan, Dongdong Lin, Yu-Ping Wang
2011 — conf
Detection of copy number variation from next generation sequencing data with total variation penalized least square optimization.
BIBM Workshops
Junbo Duan, Ji-Gang Zhang, John Lefante, Hong-Wen Deng, Yu-Ping Wang
2011 J jnl
From Bernoulli-Gaussian Deconvolution to Sparse Signal Restoration.
IEEE Trans. Signal Process.
Charles Soussen, Jérôme Idier, David Brie, Junbo Duan