Jun Xu - RankMe

58 papers B 1C 3Journal 32Unranked 21

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Adapting LLMs for biomedical natural language processing: a comprehensive benchmark study on fine-tuning methods. J. Supercomput. Junjie Zhu, Jin Li, Shen Zhao, Yiyan Deng, Yongming Miao, Jun Xu
2026	J	`jnl`	Dual-path prompt-enhanced semi-supervised segmentation for retinal vessel quantification in OCTA imaging. Appl. Soft Comput. Yuemei Luo, Yuan Li, Lei Tao, Jun Xu, Linbo Liu
2025	—	`conf`	A Hierarchical Geometry-Guided Transformer for Histological Subtyping of Primary Liver Cancer. BIBM Anwen Lu, Mingxin Liu, Yiping Jiao, Geyang Xu, Hongyi Gong, Chengfei Cai, Jun Chen, Jun Xu
2025	J	`jnl`	A Hierarchical Geometry-guided Transformer for Histological Subtyping of Primary Liver Cancer. CoRR Anwen Lu, Mingxin Liu, Yiping Jiao, Hongyi Gong, Geyang Xu, Jun Chen, Jun Xu
2025	J	`jnl`	A Self-Adaptive Frequency Domain Network for Continuous Intraoperative Hypotension Prediction. CoRR Xian Zeng, Tianze Xu, Kai Yang, Jie Sun, Youran Wang, Jun Xu, Mucheng Ren
2025	—	`conf`	AST-CNN: Adaptive Time-Shift Convolutional Neural Network for Robust Intraoperative Hypotension Prediction. BIBM Tianze Xu, Mucheng Ren, Kai Yang, Jun Xu, Xian Zeng
2025	J	`jnl`	Glo-net: A dual task branch based neural network for multi-class glomeruli segmentation. Comput. Biol. Medicine Xiangxue Wang, Jingkai Zhang, Yuemei Xu, Yang Huang, Wenlong Ming, Yiping Jiao, Bicheng Liu, Xiangshan Fan, Jun Xu
2025	J	`jnl`	IBDAIM:Artificial intelligence for analyzing intestinal biopsies pathological images for assisted integrated diagnostic of inflammatory bowel disease. Int. J. Medical Informatics Chengfei Cai, Qianyun Shi, Mingxin Liu, Jun Li, Yangshu Zhou, Andi Xu, Dan Zhang, Yiping Jiao, Yao Liu, Xiaobin Cui, Jun Chen, Jun Xu, Qi Sun
2025	—	`conf`	Medical Knowledge Enhanced Dual-Level Alignment Network for Herbal Prescription Recommendation. BIBM He Chen, Xian Zeng, Jun Xu, Mucheng Ren
2025	—	`conf`	MurreNet: Modeling Holistic Multimodal Interactions Between Histopathology and Genomic Profiles for Survival Prediction. MICCAI (15) Mingxin Liu, Chengfei Cai, Jun Li, Pengbo Xu, Jinze Li, Jiquan Ma, Jun Xu
2025	J	`jnl`	MurreNet: Modeling Holistic Multimodal Interactions Between Histopathology and Genomic Profiles for Survival Prediction. CoRR Mingxin Liu, Chengfei Cai, Jun Li, Pengbo Xu, Jinze Li, Jiquan Ma, Jun Xu
2025	J	`jnl`	Predicting ustekinumab treatment response in Crohn's disease using pre-treatment biopsy images. Bioinform. Chengfei Cai, Ruidong Chen, Jieyu Chen, Jun Li, Caiyun Lv, Yiping Jiao, Lanqing Wu, Juan Chen, Qi Sun, Qianyun Shi, Jun Xu, Wen Tang, Yao Liu
2025	J	`jnl`	Prediction of molecular subtypes for endometrial cancer based on hierarchical foundation model. Bioinform. Haoyu Cui, Qinhao Guo, Jun Xu, Xiaohua Wu, Chengfei Cai, Yiping Jiao, Wenlong Ming, Hao Wen, Xiangxue Wang
2025	J	`jnl`	RAPT: Reverse Attention With Pyramid Vision Transformer for Polyp Segmentation. IEEE Access Wenyi Wu, Keyu Yan, Fan Xu, Jun Xu
2025	J	`jnl`	Retinopathy identification in optical coherence tomography images based on a novel class-aware contrastive learning approach. Knowl. Based Syst. Yuan Li, Chenxi Huang, Bowen Zheng, Zhiyuan Zheng, Hongying Tang, Shenghong Ju, Jun Xu, Yuemei Luo
2025	—	`conf`	SC-AGR: Spatially-Constrained Attention for Context-Aware Graph Representation in Histopathology Whole Slide Image Analysis. ICIC (25) Chengfei Cai, Jiahao Chen, Mingxin Liu, Jun Li, Jun Xu
2025	—	`conf`	Tracecoder: Towards Traceable Icd Coding Via Multi-Source Knowledge Integration. BIBM Mucheng Ren, He Chen, Yucheng Yan, Danqing Hu, Jun Xu, Xian Zeng
2024	J	`jnl`	Automatic myeloblast segmentation in acute myeloid leukemia images based on adversarial feature learning. Comput. Methods Programs Biomed. Zelin Zhang, Sara ArabYarmohammadi, Patrick Leo, Howard Meyerson, Leland Metheny, Jun Xu, Anant Madabhushi
2024	—	`conf`	Pathological Primitive Segmentation based on Visual Foundation Model with Zero-Shot Mask Generation. ISBI Abu Bakor Hayat Arnob, Xiangxue Wang, Yiping Jiao, Xiao Gan, Wenlong Ming, Jun Xu
2024	J	`jnl`	Pathologist-level diagnosis of ulcerative colitis inflammatory activity level using an automated histological grading method. Int. J. Medical Informatics Chengfei Cai, Qianyun Shi, Jun Li, Yiping Jiao, Andi Xu, Yangshu Zhou, Xiangxue Wang, Chunyan Peng, Xiaoqi Zhang, Xiaobin Cui, Jun Chen, Jun Xu, Qi Sun
2024	—	`conf`	SeqFRT: Towards Effective Adaption of Foundation Model via Sequence Feature Reconstruction in Computational Pathology. BIBM Chengfei Cai, Jun Li, Mingxin Liu, Yiping Jiao, Jun Xu
2023	J	`jnl`	Predicting recurrence in osteosarcoma via a quantitative histological image classifier derived from tumour nuclear morphological features. CAAI Trans. Intell. Technol. Zhan Wang, Haoda Lu, Yan Wu, Shihong Ren, Diarra Mohamed Diaty, Yanbiao Fu, Yi Zou, Lingling Zhang, Zenan Wang, Fangqian Wang, Shu Li, Xinmi Huo, Weimiao Yu, Jun Xu, Zhaoming Ye
2022	J	`jnl`	A novel pipeline for computerized mouse spermatogenesis staging. Bioinform. Haoda Lu, Min Zang, Gabriel Pik Liang Marini, Xiangxue Wang, Yiping Jiao, Nianfei Ao, Kok Haur Ong, Xinmi Huo, Longjie Li, Eugene Yujun Xu, Wilson Wen Bin Goh, Weimiao Yu, Jun Xu
2022	—	`conf`	Localizing the Recurrent Laryngeal Nerve via Ultrasound with a Bayesian Shape Framework. MICCAI (4) Haoran Dou, Luyi Han, Yushuang He, Jun Xu, Nishant Ravikumar, Ritse Mann, Alejandro F. Frangi, Pew-Thian Yap, Yunzhi Huang
2022	J	`jnl`	Localizing the Recurrent Laryngeal Nerve via Ultrasound with a Bayesian Shape Framework. CoRR Haoran Dou, Luyi Han, Yushuang He, Jun Xu, Nishant Ravikumar, Ritse Mann, Alejandro F. Frangi, Pew-Thian Yap, Yunzhi Huang
2022	J	`jnl`	Survival prediction on intrahepatic cholangiocarcinoma with histomorphological analysis on the whole slide images. Comput. Biol. Medicine Jiawei Xie, Xiaohong Pu, Jian He, Yudong Qiu, Cheng Lu, Wei Gao, Xiangxue Wang, Haoda Lu, Jiong Shi, Yuemei Xu, Anant Madabhushi, Xiangshan Fan, Jun Chen, Jun Xu
2022	J	`jnl`	WSSS4LUAD: Grand Challenge on Weakly-supervised Tissue Semantic Segmentation for Lung Adenocarcinoma. CoRR Chu Han, Xipeng Pan, Lixu Yan, Huan Lin, Bingbing Li, Su Yao, Shanshan Lv, Zhenwei Shi, Jinhai Mai, Jiatai Lin, Bingchao Zhao, Zeyan Xu, Zhizhen Wang, Yumeng Wang, Yuan Zhang, Huihui Wang, Chao Zhu, Chunhui Lin, Lijian Mao, Min Wu, Luwen Duan, Jingsong Zhu, Dong Hu, Zijie Fang, Yang Chen, Yongbing Zhang, Yi Li, Yiwen Zou, Yiduo Yu, Xiaomeng Li, Haiming Li, Yanfen Cui, Guoqiang Han, Yan Xu, Jun Xu, Huihua Yang, Chunming Li, Zhenbing Liu, Cheng Lu, Xin Chen, Changhong Liang, Qingling Zhang, Zaiyi Liu
2021	J	`jnl`	Computerized spermatogenesis staging (CSS) of mouse testis sections via quantitative histomorphological analysis. Medical Image Anal. Jun Xu, Haoda Lu, Haixin Li, Chaoyang Yan, Xiangxue Wang, Min Zang, Dirk G. de Rooij, Anant Madabhushi, Eugene Yujun Xu
2021	J	`jnl`	Stacked-autoencoder-based model for COVID-19 diagnosis on CT images. Appl. Intell. Daqiu Li, Zhangjie Fu, Jun Xu
2020	C	`conf`	A DNN for Arrhythmia Prediction Based on ECG. HIS Yilin Wang, Le Sun, Hua Wang, Nikita E. Shklovskiy-Kordi, Jun Xu, Yongping Lu, Kouzhen Yuan
2020	J	`jnl`	Accelerated Two-Stage Particle Swarm Optimization for Clustering Not-Well-Separated Data. IEEE Trans. Syst. Man Cybern. Syst. Xiangping Xu, Jun Li, MengChu Zhou, Jun Xu, Jinde Cao
2020	J	`jnl`	Automated gleason grading on prostate biopsy slides by statistical representations of homology profile. Comput. Methods Programs Biomed. Chaoyang Yan, Kazuaki Nakane, Xiangxue Wang, Yao Fu, Haoda Lu, Xiangshan Fan, Michael D. Feldman, Anant Madabhushi, Jun Xu
2020	—	`conf`	Computationally derived cytological image markers for predicting risk of relapse in acute myeloid leukemia patients following bone marrow transplantation. Digital Pathology Sara ArabYarmohammadi, Zelin Zhang, Patrick Leo, Marjan Firouznia, Andrew Janowczyk, Haojia Li, Nathaniel M. Braman, Kaustav Bera, Behtash G. Nezami, Howard Meyerson, Jun Xu, Leland Metheny, Anant Madabhushi
2020	—	`conf`	Prior-Aware CNN with Multi-Task Learning for Colon Images Analysis. ISBI Chaoyang Yan, Jun Xu, Jiawei Xie, Chengfei Cai, Haoda Lu
2020	C	`conf`	Telemedicine System with Elements of Artificial Intelligence for Health Monitoring During COVID-19 Pandemic. HIS Sergei Shinkariov, Boris Zingerman, Irina Kargalskaya, Arkadii Nozik, Inna Fistul, Lev Evelson, Alexandra Kremenetskaya, Le Sun, Jun Xu, Olga Kremenetskaya, Nikita E. Shklovskiy-Kordi
2019	—	`conf`	Histopathological Image Analysis on Mouse Testes for Automated Staging of Mouse Seminiferous Tubule. ECDP Jun Xu, Haoda Lu, Haixin Li, Xiangxue Wang, Anant Madabhushi, Yujun Xu
2019	—	`conf`	Multi-tissue Partitioning for Whole Slide Images of Colorectal Cancer Histopathology Images with Deeptissue Net. ECDP Jun Xu, Chengfei Cai, Yangshu Zhou, Bo Yao, Geyang Xu, Xiangxue Wang, Ke Zhao, Anant Madabhushi, Zaiyi Liu, Li Liang
2017	—	`ch.`	Deep Learning for Histopathological Image Analysis: Towards Computerized Diagnosis on Cancers. Deep Learning and Convolutional Neural Networks for Medical Image Computing Jun Xu, Chao Zhou, Bing Lang, Qingshan Liu
2016	J	`jnl`	A Deep Convolutional Neural Network for segmenting and classifying epithelial and stromal regions in histopathological images. Neurocomputing Jun Xu, Xiaofei Luo, Guanhao Wang, Hannah Gilmore, Anant Madabhushi
2016	J	`jnl`	Fusing Heterogeneous Features From Stacked Sparse Autoencoder for Histopathological Image Analysis. IEEE J. Biomed. Health Informatics Xiaofan Zhang, Hang Dou, Tao Ju, Jun Xu, Shaoting Zhang
2016	J	`jnl`	Stacked Sparse Autoencoder (SSAE) for Nuclei Detection on Breast Cancer Histopathology Images. IEEE Trans. Medical Imaging Jun Xu, Lei Xiang, Qingshan Liu, Hannah Gilmore, Jianzhong Wu, Jinghai Tang, Anant Madabhushi
2015	J	`jnl`	Sparse Non-negative Matrix Factorization (SNMF) based color unmixing for breast histopathological image analysis. Comput. Medical Imaging Graph. Jun Xu, Lei Xiang, Guanhao Wang, Shridar Ganesan, Michael D. Feldman, Natalie N. C. Shih, Hannah Gilmore, Anant Madabhushi
2014	—	`conf`	Stacked Sparse Autoencoder (SSAE) based framework for nuclei patch classification on breast cancer histopathology. ISBI Jun Xu, Lei Xiang, Renlong Hang, Jianzhong Wu
2011	J	`jnl`	A high-throughput active contour scheme for segmentation of histopathological imagery. Medical Image Anal. Jun Xu, Andrew Janowczyk, Sharat Chandran, Anant Madabhushi
2011	—	`conf`	Incorporating domain knowledge for tubule detection in breast histopathology using O'Callaghan neighborhoods. Computer-Aided Diagnosis Ajay Basavanhally, Elaine Yu, Jun Xu, Shridar Ganesan, Michael D. Feldman, John Tomaszewski, Anant Madabhushi
2011	—	`conf`	Spectral embedding based active contour (SEAC): application to breast lesion segmentation on DCE-MRI. Computer-Aided Diagnosis Shannon Agner, Jun Xu, Mark Rosen, Sudha Karthigeyan, Sarah Englander, Anant Madabhushi
2010	B	`conf`	A weighted mean shift, normalized cuts initialized color gradient based geodesic active contour model: applications to histopathology image segmentation. Image Processing Jun Xu, Andrew Janowczyk, Sharat Chandran, Anant Madabhushi
2010	J	`jnl`	Expectation-Maximization-Driven Geodesic Active Contour With Overlap Resolution (EMaGACOR): Application to Lymphocyte Segmentation on Breast Cancer Histopathology. IEEE Trans. Biomed. Eng. Hussain Fatakdawala, Jun Xu, Ajay Basavanhally, Gyan Bhanot, Shridar Ganesan, Michael D. Feldman, John Tomaszewski, Anant Madabhushi
2010	—	`conf`	High-Throughput Prostate Cancer Gland Detection, Segmentation, and Classification from Digitized Needle Core Biopsies. Prostate Cancer Imaging Jun Xu, Rachel Sparks, Andrew Janowczyk, John Tomaszewski, Michael D. Feldman, Anant Madabhushi
2010	—	`conf`	Markov Random Field driven Region-Based Active Contour Model (MaRACel): Application to Medical Image Segmentation. MICCAI (3) Jun Xu, James Monaco, Anant Madabhushi
2009	J	`jnl`	Computer-Aided Detection and Diagnosis of Breast Cancer With Mammography: Recent Advances. IEEE Trans. Inf. Technol. Biomed. Jinshan Tang, Rangaraj M. Rangayyan, Jun Xu, Issam El-Naqa, Yongyi Yang
2009	—	`conf`	Computer-Aided Prognosis of ER+ Breast Cancer Histopathology and Correlating Survival Outcome with Oncotype DX Assay. ISBI Ajay Basavanhally, Jun Xu, Shridar Ganesan, Anant Madabhushi
2009	C	`conf`	Expectation Maximization driven Geodesic Active Contour with Overlap Resolution (EMaGACOR): Application to Lymphocyte Segmentation on Breast Cancer Histopathology. BIBE Hussain Fatakdawala, Ajay Basavanhally, Jun Xu, Gyan Bhanot, Shridar Ganesan, Michael D. Feldman, John Tomaszewski, Anant Madabhushi
2009	—	`conf`	Segmentation and Classification of Triple Negative Breast Cancers Using DCE-MRI. ISBI Shannon Agner, Jun Xu, Hussain Fatakdawala, Shridar Ganesan, Anant Madabhushi, Sarah Englander, Mark Rosen, Kathleen Thomas, Mitchell D. Schnall, Michael D. Feldman, John Tomaszewski
2008	J	`jnl`	Absolute Exponential Stability of Recurrent Neural Networks With Generalized Activation Function. IEEE Trans. Neural Networks Jun Xu, Yong-Yan Cao, Youxian Sun, Jinshan Tang
2008	J	`jnl`	An estimation of the domain of attraction for recurrent neural networks with time-varying delays. Neurocomputing Jun Xu, Yong-Yan Cao, Daoying Pi, Youxian Sun
2007	J	`jnl`	On Stability of Neural Networks by a Lyapunov Functional-Based Approach. IEEE Trans. Circuits Syst. I Regul. Pap. Jun Xu, Daoying Pi, Yong-Yan Cao, Shouming Zhong
2006	—	`conf`	Global Robust Stability of General Recurrent Neural Networks with Time-Varying Delays. ISNN (1) Jun Xu, Daoying Pi, Yong-Yan Cao