Jun Kong

111 papers A* 1A 3B 3C 3Misc 7Journal 51Unranked 40
YearRankTypeTitle / Venue / Authors
2025 J jnl
A hierarchical data partitioning strategy for irregular applications: a case study in digital pathology.
Clust. Comput.
Willian Barreiros, Jun Kong, Renato Ferreira, George Teodoro
2025 J jnl
IMI-GPU: Inverted multi-index for billion-scale approximate nearest neighbor search with GPUs.
J. Parallel Distributed Comput.
Alan Araujo, Willian Barreiros, Jun Kong, Renato Ferreira, George Teodoro
2024 J jnl
Efficient spatial queries over complex polygons with hybrid representations.
GeoInformatica
Dejun Teng, Furqan Baig, Zhaohui Peng, Jun Kong, Fusheng Wang
2024 — conf
Integrative Graph-Transformer Framework for Histopathology Whole Slide Image Representation and Classification.
MICCAI (11)
Zhan Shi, Jingwei Zhang, Jun Kong, Fusheng Wang
2024 J jnl
Integrative Graph-Transformer Framework for Histopathology Whole Slide Image Representation and Classification.
CoRR
Zhan Shi, Jingwei Zhang, Jun Kong, Fusheng Wang
2024 J jnl
NACNet: A Histology Context-aware Transformer Graph Convolution Network for Predicting Treatment Response to Neoadjuvant Chemotherapy in Triple Negative Breast Cancer.
CoRR
Qiang Li, George Teodoro, Yi Jiang, Jun Kong
2024 J jnl
NACNet: A histology context-aware transformer graph convolution network for predicting treatment response to neoadjuvant chemotherapy in Triple Negative Breast Cancer.
Comput. Medical Imaging Graph.
Qiang Li, George Teodoro, Yi Jiang, Jun Kong
2023 J jnl
Effective and efficient active learning for deep learning-based tissue image analysis.
Bioinform.
André L. S. Meirelles, Tahsin M. Kurç, Jun Kong, Renato Ferreira, Joel H. Saltz, George Teodoro
2023 J jnl
Self-supervised semantic segmentation of retinal pigment epithelium cells in flatmount fluorescent microscopy images.
Bioinform.
Hanyi Yu, Fusheng Wang, George Teodoro, Fan Chen, Xiaoyuan Guo, John Nickerson, Jun Kong
2022 B conf
3DPro: Querying Complex Three-Dimensional Data with Progressive Compression and Refinement.
EDBT
Dejun Teng, Furqan Baig, Hoang Vo, Yanhui Liang, Jun Kong, Fusheng Wang
2022 J jnl
A spatial attention guided deep learning system for prediction of pathological complete response using breast cancer histopathology images.
Bioinform.
Hongyi Duanmu, Shristi Bhattarai, Hongxiao Li, Zhan Shi, Fusheng Wang, George Teodoro, Keerthi Gogineni, Preeti Subhedar, Umay Kiraz, Emiel A. M. Janssen, Ritu Aneja, Jun Kong
2022 J jnl
Artificial intelligence based liver portal tract region identification and quantification with transplant biopsy whole-slide images.
Comput. Biol. Medicine
Hanyi Yu, Nima Sharifai, Kun Jiang, Fusheng Wang, George Teodoro, Alton B. Farris, Jun Kong
2022 J jnl
Efficient 3D Spatial Queries for Complex Objects.
ACM Trans. Spatial Algorithms Syst.
Dejun Teng, Yanhui Liang, Hoang Vo, Jun Kong, Fusheng Wang
2022 J jnl
Efficient microscopy image analysis on CPU-GPU systems with cost-aware irregular data partitioning.
J. Parallel Distributed Comput.
Willian Barreiros Jr., Alba C. M. A. Melo, Jun Kong, Renato Ferreira, Tahsin M. Kurç, Joel H. Saltz, George Teodoro
2022 — ed.
Heterogeneous Data Management, Polystores, and Analytics for Healthcare - VLDB Workshops, Poly 2022 and DMAH 2022, Virtual Event, September 9, 2022, Revised Selected Papers
Poly/DMAH@VLDB
El Kindi Rezig, Vijay Gadepally, Timothy G. Mattson, Michael Stonebraker, Tim Kraska, Jun Kong, Gang Luo, Dejun Teng, Fusheng Wang
2022 J jnl
MultiHeadGAN: A deep learning method for low contrast retinal pigment epithelium cell segmentation with fluorescent flatmount microscopy images.
Comput. Biol. Medicine
Hanyi Yu, Fusheng Wang, George Teodoro, John Nickerson, Jun Kong
2022 — conf
Real-time spatial registration for 3D human atlas.
BigSpatial@SIGSPATIAL
Lu Chen, Dejun Teng, Tian Zhu, Jun Kong, Bruce W. Herr, Andreas Bueckle, Katy Börner, Fusheng Wang
2022 — conf
SPEAR-board: cross-platform interactive spatio-temporal big data analytics.
SIGSPATIAL/GIS
Furqan Baig, Pradeep Nalluri, Jun Kong, Fusheng Wang
2022 J jnl
Virtual liver needle biopsy from reconstructed three-dimensional histopathological images: Quantification of sampling error.
Comput. Biol. Medicine
Qiang Li, Fusheng Wang, Yaobing Chen, Hao Chen, Shengdi Wu, Alton B. Farris, Yi Jiang, Jun Kong
2021 J jnl
Building robust pathology image analyses with uncertainty quantification.
Comput. Methods Programs Biomed.
Jeremias M. Gomes, Jun Kong, Tahsin M. Kurç, Alba C. M. A. Melo, Renato Ferreira, Joel H. Saltz, George Teodoro
2021 J jnl
Foveal blur-boosted segmentation of nuclei in histopathology images with shape prior knowledge and probability map constraints.
Bioinform.
Hongyi Duanmu, Fusheng Wang, George Teodoro, Jun Kong
2021 — conf
GPU-based Real-time Contact Tracing at Scale.
SIGSPATIAL/GIS
Dejun Teng, Akshay Nehe, Prajeeth Emanuel, Furqan Baig, Jun Kong, Fusheng Wang
2021 — ed.
Heterogeneous Data Management, Polystores, and Analytics for Healthcare - VLDB Workshops, Poly 2020 and DMAH 2020, Virtual Event, August 31 and September 4, 2020, Revised Selected Papers
Poly/DMAH@VLDB
Vijay Gadepally, Timothy G. Mattson, Michael Stonebraker, Tim Kraska, Fusheng Wang, Gang Luo, Jun Kong, Alevtina Dubovitskaya
2021 — ed.
Heterogeneous Data Management, Polystores, and Analytics for Healthcare - VLDB Workshops, Poly 2021 and DMAH 2021, Virtual Event, August 20, 2021, Revised Selected Papers
Poly/DMAH@VLDB
El Kindi Rezig, Vijay Gadepally, Timothy G. Mattson, Michael Stonebraker, Tim Kraska, Fusheng Wang, Gang Luo, Jun Kong, Alevtina Dubovitskaya
2021 — conf
Histopathology Image Registration By Integrated Texture And Spatial Proximity Based Landmark Selection And Modification.
ISBI
Pangpang Liu, Fusheng Wang, George Teodoro, Jun Kong
2021 B conf
IDEAL: a Vector-Raster Hybrid Model for Efficient Spatial Queries over Complex Polygons.
MDM
Dejun Teng, Furqan Baig, Qiheng Sun, Jun Kong, Fusheng Wang
2021 — conf
Image Registration with Optimal Regularization Parameter Selection by Learned Auto Encoder Features.
ISBI
Aurelie Akossi, Fusheng Wang, George Teodoro, Jun Kong
2021 A* conf
SPEAR: Dynamic Spatio-Temporal Query Processing over High Velocity Data Streams.
ICDE
Furqan Baig, Dejun Teng, Jun Kong, Fusheng Wang
2021 — conf
Spatial Attention-Based Deep Learning System for Breast Cancer Pathological Complete Response Prediction with Serial Histopathology Images in Multiple Stains.
MICCAI (8)
Hongyi Duanmu, Shristi Bhattarai, Hongxiao Li, Chia Cheng Cheng, Fusheng Wang, George Teodoro, Emiel A. M. Janssen, Keerthi Gogineni, Preeti Subhedar, Ritu Aneja, Jun Kong
2020 J jnl
Accelerating Spatial Cross-Matching on CPU-GPU Hybrid Platform With CUDA and OpenACC.
Frontiers Big Data
Furqan Baig, Chao Gao, Dejun Teng, Jun Kong, Fusheng Wang
2020 — conf
Automatic Brain Organ Segmentation with 3D Fully Convolutional Neural Network for Radiation Therapy Treatment Planning.
ISBI
Hongyi Duanmu, Jinkoo Kim, Praitayini Kanakaraj, Andrew Wang, John Joshua, Jun Kong, Fusheng Wang
2020 J jnl
Optimizing parameter sensitivity analysis of large-scale microscopy image analysis workflows with multilevel computation reuse.
Concurr. Comput. Pract. Exp.
Willian Barreiros Jr., Jeremias Moreira, Tahsin M. Kurç, Jun Kong, Alba C. M. A. Melo, Joel H. Saltz, George Teodoro
2020 — conf
Prediction of Pathological Complete Response to Neoadjuvant Chemotherapy in Breast Cancer Using Deep Learning with Integrative Imaging, Molecular and Demographic Data.
MICCAI (2)
Hongyi Duanmu, Pauline Boning Huang, Srinidhi Brahmavar, Stephanie Lin, Thomas Ren, Jun Kong, Fusheng Wang, Tim Q. Duong
2020 J jnl
Tensile force-induced cytoskeletal remodeling: Mechanics before chemistry.
PLoS Comput. Biol.
Xiaona Li, Qin Ni, Xiuxiu He, Jun Kong, Soon-Mi Lim, Garegin A. Papoian, Jerome P. Trzeciakowski, Andreea Trache, Yi Jiang
2019 — conf
Liver Steatosis Segmentation With Deep Learning Methods.
ISBI
Xiaoyuan Guo, Fusheng Wang, George Teodoro, Alton B. Farris, Jun Kong
2019 J jnl
Liver Steatosis Segmentation with Deep Learning Methods.
CoRR
Xiaoyuan Guo, Fusheng Wang, George Teodoro, Alton B. Farris, Jun Kong
2019 J jnl
MaReIA: a cloud MapReduce based high performance whole slide image analysis framework.
Distributed Parallel Databases
Hoang Vo, Jun Kong, Dejun Teng, Yanhui Liang, Ablimit Aji, George Teodoro, Fusheng Wang
2019 Misc conf
Machine Learning Based Opioid Overdose Prediction Using Electronic Health Records.
AMIA
Xinyu Dong, Sina Rashidian, Yu Wang, Janos G. Hajagos, Xia Zhao, Richard N. Rosenthal, Jun Kong, Mary M. Saltz, Joel H. Saltz, Fusheng Wang
2019 J jnl
Multi-objective Parameter Auto-tuning for Tissue Image Segmentation Workflows.
J. Digit. Imaging
Luis F. R. Taveira, Tahsin M. Kurç, Alba C. M. A. Melo, Jun Kong, Erich Bremer, Joel H. Saltz, George Teodoro
2019 J jnl
Run-time Parameter Sensitivity Analysis Optimizations.
CoRR
Eduardo Scartezini, Willian Barreiros Jr., Tahsin M. Kurç, Jun Kong, Alba C. M. A. Melo, Joel H. Saltz, George Teodoro
2019 J jnl
Scalable and flexible management of medical image big data.
Distributed Parallel Databases
Dejun Teng, Jun Kong, Fusheng Wang
2019 J jnl
Sensitivity analysis in digital pathology: Handling large number of parameters with compute expensive workflows.
Comput. Biol. Medicine
Jeremias M. Gomes, Willian Barreiros Jr., Tahsin M. Kurç, Alba C. M. A. Melo, Jun Kong, Joel H. Saltz, George Teodoro
2018 — conf
Analysis of Cellular Feature Differences of Astrocytomas with Distinct Mutational Profiles Using Digitized Histopathology Images.
EMBC
Mousumi Roy, Fusheng Wang, George Teodoro, Jose Velazqeuz Vega, Daniel J. Brat, Jun Kong
2018 J jnl
Analysis of Cellular Feature Differences of Astrocytomas with Distinct Mutational Profiles Using Digitized Histopathology Images.
CoRR
Mousumi Roy, Fusheng Wang, George Teodoro, Jose Velazqeuz Vega, Daniel J. Brat, Jun Kong
2018 J jnl
Clumped Nuclei Segmentation with Adjacent Point Match and Local Shape based Intensity Analysis for Overlapped Nuclei in Fluorescence In-Situ Hybridization Images.
CoRR
Xiaoyuan Guo, Hanyi Yu, Blair J. Rossetti, George Teodoro, Daniel J. Brat, Jun Kong
2018 — conf
Clumped Nuclei Segmentation with Adjacent Point Match and Local Shape-Based Intensity Analysis in Fluorescence Microscopy Images.
EMBC
Xiaoyuan Guo, Hanyi Yu, Blair J. Rossetti, George Teodoro, Daniel J. Brat, Jun Kong
2018 J jnl
Cooperative and out-of-core execution of the irregular wavefront propagation pattern on hybrid machines with Intel® Xeon Phi™.
Concurr. Comput. Pract. Exp.
Jeremias M. Gomes, Alba Cristina Magalhaes Alves de Melo, Jun Kong, Tahsin M. Kurç, Joel H. Saltz, George Teodoro
2018 — conf
Segmentation of Overlapped Steatosis in Whole-Slide Liver Histopathology Microscopy Images.
EMBC
Mousumi Roy, Fusheng Wang, George Teodoro, Miriam B. Vos, Alton Brad Farris, Jun Kong
2018 J jnl
Segmentation of Overlapped Steatosis in Whole-Slide Liver Histopathology Microscopy Images.
CoRR
Mousumi Roy, Fusheng Wang, George Teodoro, Miriam B. Vos, Alton Brad Farris, Jun Kong
2018 J jnl
Tuning for Tissue Image Segmentation Workflows for Accuracy and Performance.
CoRR
Luis F. R. Taveira, Tahsin M. Kurç, Alba C. M. A. Melo, Jun Kong, Erich Bremer, Joel H. Saltz, George Teodoro
2018 J jnl
iSPEED: a Scalable and Distributed In-Memory Based Spatial Query System for Large and Structurally Complex 3D Data.
Proc. VLDB Endow.
Hoang Vo, Yanhui Liang, Jun Kong, Fusheng Wang
2017 J jnl
Application performance analysis and efficient execution on systems with multi-core CPUs, GPUs and MICs: a case study with microscopy image analysis.
Int. J. High Perform. Comput. Appl.
George Teodoro, Tahsin M. Kurç, Guilherme Andrade, Jun Kong, Renato Ferreira, Joel H. Saltz
2017 — conf
Automated level set segmentation of histopathologic cells with sparse shape prior support and dynamic occlusion constraint.
ISBI
Pengyue Zhang, Fusheng Wang, George Teodoro, Yanhui Liang, Daniel J. Brat, Jun Kong
2017 — conf
Dynamic registration for gigapixel serial whole slide images.
ISBI
Blair J. Rossetti, Fusheng Wang, Pengyue Zhang, George Teodoro, Daniel J. Brat, Jun Kong
2017 C conf
Parallel and Efficient Sensitivity Analysis of Microscopy Image Segmentation Workflows in Hybrid Systems.
CLUSTER
Willian Barreiros, George Teodoro, Tahsin M. Kurç, Jun Kong, Alba C. M. A. Melo, Joel H. Saltz
2017 — conf
iSPEED: an Efficient In-Memory Based Spatial Query System for Large-Scale 3D Data with Complex Structures.
SIGSPATIAL/GIS
Yanhui Liang, Hoang Vo, Jun Kong, Fusheng Wang
2016 J jnl
A framework for 3D vessel analysis using whole slide images of liver tissue sections.
Int. J. Comput. Biol. Drug Des.
Yanhui Liang, Fusheng Wang, Darren Treanor, Derek R. Magee, Nick Roberts, George Teodoro, Yangyang Zhu, Jun Kong
2016 — conf
Cloud-Based Whole Slide Image Analysis Using MapReduce.
DMAH@VLDB
Hoang Vo, Jun Kong, Dejun Teng, Yanhui Liang, Ablimit Aji, George Teodoro, Fusheng Wang
2016 J jnl
Efficient Methods and Parallel Execution for Algorithm Sensitivity Analysis with Parameter Tuning on Microscopy Imaging Datasets.
CoRR
George Teodoro, Tahsin M. Kurç, Luis F. R. Taveira, Alba C. M. A. Melo, Jun Kong, Joel H. Saltz
2016 — conf
IEVQ: An Iterative Example-Based Visual Query for Pathology Database.
DMAH@VLDB
Cong Xie, Wen Zhong, Jun Kong, Wei Xu, Klaus Mueller, Fusheng Wang
2016 — conf
Robust cell segmentation for histological images of Glioblastoma.
ISBI
Jun Kong, Pengyue Zhang, Yanhui Liang, George Teodoro, Daniel J. Brat, Fusheng Wang
2016 — conf
Scalable 3D spatial queries for analytical pathology imaging with MapReduce.
SIGSPATIAL/GIS
Yanhui Liang, Hoang Vo, Ablimit Aji, Jun Kong, Fusheng Wang
2016 Misc conf
Three-Dimension (3D) Blood Vessel Reconstruction and Spatial Analytics with Whole-Slide Histological Images.
AMIA
Yanhui Liang, Jun Kong, Fusheng Wang
2015 — conf
A 3D Primary Vessel Reconstruction Framework with Serial Microscopy Images.
MICCAI (3)
Yanhui Liang, Fusheng Wang, Darren Treanor, Derek R. Magee, George Teodoro, Yangyang Zhu, Jun Kong
2015 — conf
An interactive learning framework for scalable classification of pathology images.
IEEE BigData
Michael Nalisnik, David A. Gutman, Jun Kong, Lee A. D. Cooper
2015 — conf
Automated cell segmentation with 3D fluorescence microscopy images.
ISBI
Jun Kong, Fusheng Wang, George Teodoro, Yanhui Liang, Yangyang Zhu, Carol Tucker-Burden, Daniel J. Brat
2015 C conf
Efficient Irregular Wavefront Propagation Algorithms on Intel(R) Xeon Phi(TM).
SBAC-PAD
Jeremias M. Gomes, George Teodoro, Alba de Melo, Jun Kong, Tahsin M. Kurç, Joel H. Saltz
2015 — conf
Liver whole slide image analysis for 3D vessel reconstruction.
ISBI
Yanhui Liang, Fusheng Wang, Darren Treanor, Derek R. Magee, George Teodoro, Yangyang Zhu, Jun Kong
2015 J jnl
Performance Analysis and Efficient Execution on Systems with multi-core CPUs, GPUs and MICs.
CoRR
George Teodoro, Tahsin M. Kurç, Guilherme Andrade, Jun Kong, Renato Ferreira, Joel H. Saltz
2015 — conf
Three-Dimensional Data Analytics for Pathology Imaging.
Big-O(Q)/DMAH@VLDB
Yanhui Liang, Jun Kong, Yangyang Zhu, Fusheng Wang
2014 A conf
Comparative Performance Analysis of Intel (R) Xeon Phi (TM), GPU, and CPU: A Case Study from Microscopy Image Analysis.
IPDPS
George Teodoro, Tahsin M. Kurç, Jun Kong, Lee Cooper, Joel H. Saltz
2014 J jnl
Region Templates: Data Representation and Management for Large-Scale Image Analysis.
CoRR
George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee Cooper, Scott Klasky, Joel H. Saltz
2014 J jnl
Region templates: Data representation and management for high-throughput image analysis.
Parallel Comput.
George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee Cooper, Scott Klasky, Joel H. Saltz
2013 J jnl
Comparative Performance Analysis of Intel Xeon Phi, GPU, and CPU.
CoRR
George Teodoro, Tahsin M. Kurç, Jun Kong, Lee Cooper, Joel H. Saltz
2013 J jnl
Efficient irregular wavefront propagation algorithms on hybrid CPU-GPU machines.
Parallel Comput.
George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Joel H. Saltz
2013 J jnl
Feature-based analysis of large-scale spatio-temporal sensor data on hybrid architectures.
Int. J. High Perform. Comput. Appl.
Joel H. Saltz, George Teodoro, Tony Pan, Lee A. D. Cooper, Jun Kong, Scott Klasky, Tahsin M. Kurç
2013 — conf
High-performance computational analysis of glioblastoma pathology images with database support identifies molecular and survival correlates.
BIBM
Jun Kong, Fusheng Wang, George Teodoro, Lee Cooper, Carlos Sanchez Moreno, Tahsin M. Kurç, Tony Pan, Joel H. Saltz, Daniel J. Brat
2013 A conf
High-throughput Analysis of Large Microscopy Image Datasets on CPU-GPU Cluster Platforms.
IPDPS
George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Norbert Podhorszki, Scott Klasky, Joel H. Saltz
2012 A conf
Accelerating Large Scale Image Analyses on Parallel, CPU-GPU Equipped Systems.
IPDPS
George Teodoro, Tahsin M. Kurç, Tony Pan, Lee A. D. Cooper, Jun Kong, Patrick M. Widener, Joel H. Saltz
2012 J jnl
Digital Pathology: Data-Intensive Frontier in Medical Imaging.
Proc. IEEE
Lee A. D. Cooper, Alexis B. Carter, Alton B. Farris, Fusheng Wang, Jun Kong, David A. Gutman, Patrick M. Widener, Tony C. Pan, Sharath R. Cholleti, Ashish Sharma, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz
2012 J jnl
Efficient Irregular Wavefront Propagation Algorithms on Hybrid CPU-GPU Machines
CoRR
George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee Cooper, Joel H. Saltz
2012 Misc conf
High Performance Computing for Integrative Analysis of Large Pathology Image Datasets.
AMIA
Tahsin M. Kurç, Joel H. Saltz, George Teodoro, Tony Pan, Lee A. D. Cooper, Jun Kong, David A. Gutman, Daniel J. Brat, Fusheng Wang
2012 J jnl
High-throughput Execution of Hierarchical Analysis Pipelines on Hybrid Cluster Platforms
CoRR
George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Joel H. Saltz
2012 J jnl
Integrated morphologic analysis for the identification and characterization of disease subtypes.
J. Am. Medical Informatics Assoc.
Lee A. D. Cooper, Jun Kong, David A. Gutman, Fusheng Wang, Jingjing Gao, Christina Appin, Sharath R. Cholleti, Tony Pan, Ashish Sharma, Lisa Scarpace, Tom Mikkelsen, Tahsin M. Kurç, Carlos Sanchez Moreno, Daniel J. Brat, Joel H. Saltz
2011 — conf
A comprehensive framework for classification of nuclei in digital microscopy imaging: An application to diffuse gliomas.
ISBI
Jun Kong, Lee Cooper, Fusheng Wang, Candace Chisolm, Carlos Sanchez Moreno, Tahsin M. Kurç, Patrick M. Widener, Daniel J. Brat, Joel H. Saltz
2011 B conf
A new steerable pressure force for parametric deformable models.
Image Processing
Jun Kong, Lee Cooper, Ashish Sharma, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz
2011 — conf
Computer-Based Image Analysis of Liver Steatosis with Large-Scale Microscopy Imagery and Correlation with Magnetic Resonance Imaging Lipid Analysis.
BIBM
Jun Kong, Michael J. Lee, Pelin Bagci, Puneet Sharma, Diego R. Martín, N. Volkan Adsay, Joel H. Saltz, Alton B. Farris
2011 — conf
In silico analysis of nuclei in glioblastoma using large-scale microscopy images improves prediction of treatment response.
EMBC
Jun Kong, Lee Cooper, Carlos Sanchez Moreno, Fusheng Wang, Tahsin M. Kurç, Joel H. Saltz, Daniel J. Brat
2011 J jnl
Integrative, Multimodal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images, and Clinical Outcomes.
IEEE Trans. Biomed. Eng.
Jun Kong, Lee A. D. Cooper, Fusheng Wang, David A. Gutman, Jingjing Gao, Candace Chisolm, Ashish Sharma, Tony Pan, Erwin G. Van Meir, Tahsin M. Kurç, Carlos Sanchez Moreno, Joel H. Saltz, Daniel J. Brat
2011 — conf
Morphological signatures and genomic correlates in glioblastoma.
ISBI
Lee A. D. Cooper, Jun Kong, Fusheng Wang, Tahsin M. Kurç, Carlos Sanchez Moreno, Daniel J. Brat, Joel H. Saltz
2011 — conf
Towards building computerized image analysis framework for nucleus discrimination in microscopy images of diffuse glioma.
EMBC
Jun Kong, Lee Cooper, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz
2010 J jnl
An Integrative Approach for In Silico Glioma Research.
IEEE Trans. Biomed. Eng.
Lee A. D. Cooper, Jun Kong, David A. Gutman, Fusheng Wang, Sharath R. Cholleti, Tony C. Pan, Patrick M. Widener, Ashish Sharma, Tom Mikkelsen, Adam E. Flanders, Daniel L. Rubin, Erwin G. Van Meir, Tahsin M. Kurç, Carlos Sanchez Moreno, Daniel J. Brat, Joel H. Saltz
2010 — conf
High Performance Computing Techniques for Scaling Image Analysis Workflows.
PARA (2)
Patrick M. Widener, Tahsin M. Kurç, Wenjin Chen, Fusheng Wang, Lin Yang, Jun Hu, Vijay Kumar, Vicky Chu, Lee Cooper, Jun Kong, Ashish Sharma, Tony Pan, Joel H. Saltz, David J. Foran
2010 — conf
High-Performance Systems for in Silico Microscopy Imaging Studies.
DILS
Fusheng Wang, Tahsin M. Kurç, Patrick M. Widener, Tony Pan, Jun Kong, Lee Cooper, David A. Gutman, Ashish Sharma, Sharath R. Cholleti, Vijay Kumar
2010 Misc conf
Texture based image recognition in microscopy images of diffuse gliomas with multi-class gentle boosting mechanism.
ICASSP
Jun Kong, Lee Cooper, Ashish Sharma, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz
2009 J jnl
Computer-aided evaluation of neuroblastoma on whole-slide histology images: Classifying grade of neuroblastic differentiation.
Pattern Recognit.
Jun Kong, Olcay Sertel, Hiroyuki Shimada, Kim L. Boyer, Joel H. Saltz, Metin N. Gurcan
2009 J jnl
Computer-aided prognosis of neuroblastoma on whole-slide images: Classification of stromal development.
Pattern Recognit.
Olcay Sertel, Jun Kong, Hiroyuki Shimada, Ümit V. Çatalyürek, Joel H. Saltz, Metin N. Gurcan
2009 J jnl
Feature-based registration of histopathology images with different stains: An application for computerized follicular lymphoma prognosis.
Comput. Methods Programs Biomed.
Lee Cooper, Olcay Sertel, Jun Kong, Gerard Lozanski, Kun Huang, Metin N. Gurcan
2009 J jnl
Histopathological Image Analysis Using Model-Based Intermediate Representations and Color Texture: Follicular Lymphoma Grading.
J. Signal Process. Syst.
Olcay Sertel, Jun Kong, Ümit V. Çatalyürek, Gerard Lozanski, Joel H. Saltz, Metin N. Gurcan
2008 — conf
A multi-resolution image analysis system for computer-assisted grading of neuroblastoma differentiation.
Computer-Aided Diagnosis
Jun Kong, Olcay Sertel, Hiroyuki Shimada, Kim L. Boyer, Joel H. Saltz, Metin N. Gurcan
2008 J jnl
Analysis and Semantic Querying in Large Biomedical Image Datasets.
Computer
Vijay S. Kumar, Sivaramakrishnan Narayanan, Tahsin M. Kurç, Jun Kong, Metin N. Gurcan, Joel H. Saltz
2008 — conf
Computer-aided prognosis of neuroblastoma: classification of stromal development on whole-slide images.
Computer-Aided Diagnosis
Olcay Sertel, Jun Kong, Hiroyuki Shimada, Ümit V. Çatalyürek, Joel H. Saltz, Metin N. Gurcan
2008 — conf
Computerized microscopic image analysis of follicular lymphoma.
Computer-Aided Diagnosis
Olcay Sertel, Jun Kong, Gerard Lozanski, Ümit V. Çatalyürek, Joel H. Saltz, Metin N. Gurcan
2008 — conf
Pathological image segmentation for neuroblastoma using the GPU.
ISBI
Antonio Ruiz, Jun Kong, Manuel Ujaldon, Kim L. Boyer, Joel H. Saltz, Metin N. Gurcan
2008 Misc conf
Texture classification using nonlinear color quantization: Application to histopathological image analysis.
ICASSP
Olcay Sertel, Jun Kong, Gerard Lozanski, Arwa Shanaah, Ümit V. Çatalyürek, Joel H. Saltz, Metin N. Gurcan
2007 — conf
Computer-Aided Grading of Neuroblastic Differentiation: Multi-Resolution and Multi-Classifier Approach.
ICIP (5)
Jun Kong, Olcay Sertel, Hiroyuki Shimada, Kim L. Boyer, Joel H. Saltz, Metin N. Gurcan
2007 Misc conf
Computerized Pathological Image Analysis For Neuroblastoma Prognosis.
AMIA
Metin N. Gurcan, Jun Kong, Olcay Sertel, Berkant Barla Cambazoglu, Joel H. Saltz, Ümit V. Çatalyürek
2007 — conf
Efficient processing of pathological images using the grid: computer-aided prognosis of neuroblastoma.
CLADE@HPDC
Berkant Barla Cambazoglu, Olcay Sertel, Jun Kong, Joel H. Saltz, Metin N. Gurcan, Ümit V. Çatalyürek
2007 — conf
Image Analysis for Automated Assessment of Grade of Neuroblastic Differentiation.
ISBI
Jun Kong, Hiroyuki Shimada, Kim L. Boyer, Joel H. Saltz, Metin N. Gurcan
2007 C conf
Performance vs. accuracy trade-offs for large-scale image analysis applications.
CLUSTER
Vijay S. Kumar, Tahsin M. Kurç, Jun Kong, Ümit V. Çatalyürek, Metin N. Gurcan, Joel H. Saltz
2006 Misc conf
Service-Based Access to and Processing of Large Scientific Datasets.
High Performance Computing Workshop
Ümit V. Çatalyürek, Sivaramakrishnan Narayanan, Olcay Sertel, Jun Kong, Berkant Barla Cambazoglu, Tony Pan, Ashish Sharma, Shannon Hastings, Stephen Langella, Scott Oster, Tahsin M. Kurç, Metin Nafi Gürcan, Joel H. Saltz