Jun'ichi Tsujii

324 papers A* 37A 12B 66C 4Misc 6Journal 69Unranked 116
YearRankTypeTitle / Venue / Authors
2026 J jnl
MemAdapter: Fast Alignment across Agent Memory Paradigms via Generative Subgraph Retrieval.
CoRR
Xin Zhang, Kailai Yang, Chenyue Li, Hao Li, Qiyu Wei, Jun'ichi Tsujii, Sophia Ananiadou
2025 B conf
ELAINE-medLLM: Lightweight English Japanese Chinese Trilingual Large Language Model for Bio-medical Domain.
COLING
Ken Yano, Zheheng Luo, Jimin Huang, Qianqian Xie, Masaki Asada, Chenhan Yuan, Kailai Yang, Makoto Miwa, Sophia Ananiadou, Jun'ichi Tsujii
2020 B conf
CharacterBERT: Reconciling ELMo and BERT for Word-Level Open-Vocabulary Representations From Characters.
COLING
Hicham El Boukkouri, Olivier Ferret, Thomas Lavergne, Hiroshi Noji, Pierre Zweigenbaum, Jun'ichi Tsujii
2020 — conf
Compositional Phrase Alignment and Beyond.
EMNLP (1)
Yuki Arase, Jun'ichi Tsujii
2019 J jnl
Improving clinical named entity recognition in Chinese using the graphical and phonetic feature.
BMC Medical Informatics Decis. Mak.
Yifei Wang, Sophia Ananiadou, Jun'ichi Tsujii
2019 — conf
Transfer Fine-Tuning: A BERT Case Study.
EMNLP/IJCNLP (1)
Yuki Arase, Jun'ichi Tsujii
2018 J jnl
Annotation and detection of drug effects in text for pharmacovigilance.
J. Cheminformatics
Paul Thompson, Sophia Daikou, Kenju Ueno, Riza Batista-Navarro, Jun'ichi Tsujii, Sophia Ananiadou
2018 — conf
Improve Chinese Clinical Named Entity Recognition Performance by Using the Graphical and Phonetic Feature.
BIBM
Yifei Wang, Sophia Ananiadou, Jun'ichi Tsujii
2018 A* ed.
Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, Brussels, Belgium, October 31 - November 4, 2018
EMNLP
Ellen Riloff, David Chiang, Julia Hockenmaier, Jun'ichi Tsujii
2018 B conf
SPADE: Evaluation Dataset for Monolingual Phrase Alignment.
LREC
Yuki Arase, Jun'ichi Tsujii
2017 — conf
Distributed Document and Phrase Co-embeddings for Descriptive Clustering.
EACL (1)
Motoki Sato, Austin J. Brockmeier, Georgios Kontonatsios, Tingting Mu, John Yannis Goulermas, Jun'ichi Tsujii, Sophia Ananiadou
2016 — conf
A Latent Concept Topic Model for Robust Topic Inference Using Word Embeddings.
ACL (2)
Weihua Hu, Jun'ichi Tsujii
2016 — ed.
Proceedings of the 15th Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2016, Berlin, Germany, August 12, 2016
BioNLP@ACL
Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun'ichi Tsujii
2015 J jnl
Bilingual term alignment from comparable corpora in English discharge summary and Chinese discharge summary.
BMC Bioinform.
Yan Xu, Luoxin Chen, Junsheng Wei, Sophia Ananiadou, Yubo Fan, Yi Qian, Eric I-Chao Chang, Jun'ichi Tsujii
2015 — conf
Estimating Numerical Attributes by Bringing Together Fragmentary Clues.
HLT-NAACL
Hiroya Takamura, Jun'ichi Tsujii
2015 J jnl
Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013.
BMC Bioinform.
Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Andrew Rowley, Hong-Woo Chun, Sung-Jae Jung, Sung-Pil Choi, Jun'ichi Tsujii, Sophia Ananiadou
2015 — ed.
Proceedings of the Workshop on Biomedical Natural Language Processing, BioNLP@IJCNLP 2015, Beijing, China, July 30, 2015
BioNLP@IJCNLP
Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun'ichi Tsujii
2014 A* conf
Combining String and Context Similarity for Bilingual Term Alignment from Comparable Corpora.
EMNLP
Georgios Kontonatsios, Ioannis Korkontzelos, Jun'ichi Tsujii, Sophia Ananiadou
2014 B conf
Common Space Embedding of Primal-Dual Relation Semantic Spaces.
COLING
Hidekazu Oiwa, Jun'ichi Tsujii
2014 J jnl
Generalising semantic category disambiguation with large lexical resources for fun and profit.
J. Biomed. Semant.
Pontus Stenetorp, Sampo Pyysalo, Sophia Ananiadou, Jun'ichi Tsujii
2014 J jnl
Generalization of Semantic Roles in Automatic Semantic Role Labeling.
Inf. Media Technol.
Yuichiroh Matsubayashi, Naoaki Okazaki, Jun'ichi Tsujii
2014 — ed.
Proceedings of BioNLP, Baltimore, Maryland, USA, BioNLP@ACL 2014, June 27-28, 2014
BioNLP@ACL
Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun'ichi Tsujii
2014 A conf
Using a Random Forest Classifier to Compile Bilingual Dictionaries of Technical Terms from Comparable Corpora.
EACL
Georgios Kontonatsios, Ioannis Korkontzelos, Jun'ichi Tsujii, Sophia Ananiadou
2013 J jnl
Design and implementation of GXP make - A workflow system based on make.
Future Gener. Comput. Syst.
Kenjiro Taura, Takuya Matsuzaki, Makoto Miwa, Yoshikazu Kamoshida, Daisaku Yokoyama, Nan Dun, Takeshi Shibata, Choi Sung Jun, Jun'ichi Tsujii
2013 J jnl
Learning Abbreviations from Chinese and English Terms by Modeling Non-Local Information.
ACM Trans. Asian Lang. Inf. Process.
Xu Sun, Naoaki Okazaki, Jun'ichi Tsujii, Houfeng Wang
2013 J jnl
Named entity recognition with multiple segment representations.
Inf. Process. Manag.
Han-Cheol Cho, Naoaki Okazaki, Makoto Miwa, Jun'ichi Tsujii
2013 — conf
Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013.
BioNLP@ACL (Shared Task)
Tomoko Ohta, Sampo Pyysalo, Rafal Rak, Andrew Rowley, Hong-Woo Chun, Sung-Jae Jung, Sung-Pil Choi, Sophia Ananiadou, Jun'ichi Tsujii
2013 J jnl
Probabilistic Chinese word segmentation with non-local information and stochastic training.
Inf. Process. Manag.
Xu Sun, Yao-Zhong Zhang, Takuya Matsuzaki, Yoshimasa Tsuruoka, Jun'ichi Tsujii
2013 — conf
Using a Random Forest Classifier to recognise translations of biomedical terms across languages.
BUCC@ACL
Georgios Kontonatsios, Ioannis Korkontzelos, Sophia Ananiadou, Jun'ichi Tsujii
2012 — conf
Akamon: An Open Source Toolkit for Tree/Forest-Based Statistical Machine Translation.
ACL (System Demonstrations)
Xianchao Wu, Takuya Matsuzaki, Jun'ichi Tsujii
2012 B conf
Biomedical Chinese-English CLIR Using an Extended CMeSH Resource to Expand Queries.
LREC
Xinkai Wang, Paul Thompson, Jun'ichi Tsujii, Sophia Ananiadou
2012 — conf
Bridging the Gap Between Scope-based and Event-based Negation/Speculation Annotations: A Bridge Not Too Far.
ExProM@ACL
Pontus Stenetorp, Sampo Pyysalo, Tomoko Ohta, Sophia Ananiadou, Jun'ichi Tsujii
2012 A conf
Coordination Structure Analysis using Dual Decomposition.
EACL
Atsushi Hanamoto, Takuya Matsuzaki, Jun'ichi Tsujii
2012 — conf
Incremental Joint Approach to Word Segmentation, POS Tagging, and Dependency Parsing in Chinese.
ACL (1)
Jun Hatori, Takuya Matsuzaki, Yusuke Miyao, Jun'ichi Tsujii
2012 J jnl
Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011.
BMC Bioinform.
Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Daniel E. Sullivan, Chunhong Mao, Chunxia Wang, Bruno W. S. Sobral, Jun'ichi Tsujii, Sophia Ananiadou
2012 — ed.
Proceedings of the 2012 Joint Conference on Empirical Methods in Natural Language Processing and Computational Natural Language Learning, EMNLP-CoNLL 2012, July 12-14, 2012, Jeju Island, Korea
EMNLP-CoNLL
Jun'ichi Tsujii, James Henderson, Marius Pasca
2012 — ed.
Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, BioNLP@HLT-NAACL Montrèal, Canada, June 8, 2012
BioNLP@HLT-NAACL
Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Bonnie L. Webber, Jun'ichi Tsujii, John Pestian
2012 J jnl
Proximity-Based Frameworks for Generating Embeddings from Multi-Output Data.
IEEE Trans. Pattern Anal. Mach. Intell.
Tingting Mu, John Yannis Goulermas, Jun'ichi Tsujii, Sophia Ananiadou
2012 J jnl
Statistical Extraction and Comparison of Pivot Words for Bilingual Lexicon Extension.
ACM Trans. Asian Lang. Inf. Process.
Daniel Andrade, Takuya Matsuzaki, Jun'ichi Tsujii
2012 J jnl
Structure-guided supertagger learning.
Nat. Lang. Eng.
Yao-Zhong Zhang, Takuya Matsuzaki, Jun'ichi Tsujii
2012 J jnl
The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011.
BMC Bioinform.
Jin-Dong Kim, Ngan L. T. Nguyen, Yue Wang, Jun'ichi Tsujii, Toshihisa Takagi, Akinori Yonezawa
2012 A conf
brat: a Web-based Tool for NLP-Assisted Text Annotation.
EACL
Pontus Stenetorp, Sampo Pyysalo, Goran Topic, Tomoko Ohta, Sophia Ananiadou, Jun'ichi Tsujii
2011 — conf
A Collaborative Annotation between Human Annotators and a Statistical Parser.
Linguistic Annotation Workshop
Shun'ya Iwasawa, Hiroki Hanaoka, Takuya Matsuzaki, Yusuke Miyao, Jun'ichi Tsujii
2011 J jnl
AGRA: analysis of gene ranking algorithms.
Bioinform.
Simon Kocbek, Rune Sætre, Gregor Stiglic, Jin-Dong Kim, Igor Pernek, Yoshimasa Tsuruoka, Peter Kokol, Sophia Ananiadou, Jun'ichi Tsujii
2011 J jnl
An analysis of gene/protein associations at PubMed scale.
J. Biomed. Semant.
Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
2011 — conf
Analysis of the Difficulties in Chinese Deep Parsing.
IWPT
Kun Yu, Yusuke Miyao, Takuya Matsuzaki, Xiangli Wang, Jun'ichi Tsujii
2011 — conf
Automatic Acquisition of Huge Training Data for Bio-Medical Named Entity Recognition.
BioNLP@ACL
Yu Usami, Han-Cheol Cho, Naoaki Okazaki, Jun'ichi Tsujii
2011 J jnl
Automatic extraction of angiogenesis bioprocess from text.
Bioinform.
Xinglong Wang, Iain McKendrick, Ian P. Barrett, Ian Dix, Tim French, Jun'ichi Tsujii, Sophia Ananiadou
2011 J jnl
Bio-molecular Event Extraction with Markov Logic.
Comput. Intell.
Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Toshihisa Takagi, Jun'ichi Tsujii
2011 — conf
BioNLP Shared Task 2011: Supporting Resources.
BioNLP@ACL (Shared Task)
Pontus Stenetorp, Goran Topic, Sampo Pyysalo, Tomoko Ohta, Jin-Dong Kim, Jun'ichi Tsujii
2011 — conf
Computational Linguistics and Natural Language Processing.
CICLing (1)
Jun'ichi Tsujii
2011 J jnl
Discovering and visualizing indirect associations between biomedical concepts.
Bioinform.
Yoshimasa Tsuruoka, Makoto Miwa, Kaisei Hamamoto, Jun'ichi Tsujii, Sophia Ananiadou
2011 — conf
Effective Use of Dependency Structure for Bilingual Lexicon Creation.
CICLing (2)
Daniel Andrade, Takuya Matsuzaki, Jun'ichi Tsujii
2011 A* conf
Effective Use of Function Words for Rule Generalization in Forest-Based Translation.
ACL
Xianchao Wu, Takuya Matsuzaki, Jun'ichi Tsujii
2011 J jnl
Event extraction for DNA methylation.
J. Biomed. Semant.
Tomoko Ohta, Sampo Pyysalo, Makoto Miwa, Jun'ichi Tsujii
2011 B conf
Exploring Difficulties in Parsing Imperatives and Questions.
IJCNLP
Tadayoshi Hara, Takuya Matsuzaki, Yusuke Miyao, Jun'ichi Tsujii
2011 J jnl
Extracting Bio-molecular Events from literature - the BioNLP'09 Shared Task.
Comput. Intell.
Jin-Dong Kim, Tomoko Ohta, Sampo Pyysalo, Yoshinobu Kano, Jun'ichi Tsujii
2011 — conf
From Pathways to Biomolecular Events: Opportunities and Challenges.
BioNLP@ACL
Tomoko Ohta, Sampo Pyysalo, Jun'ichi Tsujii
2011 B conf
Incremental Joint POS Tagging and Dependency Parsing in Chinese.
IJCNLP
Jun Hatori, Takuya Matsuzaki, Yusuke Miyao, Jun'ichi Tsujii
2011 J jnl
Large-vocabulary Lexical Choice with Rich Context Features.
Int. J. Comput. Linguistics Appl.
Yusuke Matsubara, Jun'ichi Tsujii
2011 — conf
Multi-topical Discussion Summarization Using Structured Lexical Chains and Cue Words.
CICLing (2)
Jun Hatori, Akiko Murakami, Jun'ichi Tsujii
2011 — conf
NTT-UT Statistical Machine Translation in NTCIR-9 PatentMT.
NTCIR
Katsuhito Sudoh, Kevin Duh, Hajime Tsukada, Masaaki Nagata, Xianchao Wu, Takuya Matsuzaki, Jun'ichi Tsujii
2011 — conf
Natural Language Understanding, Semantic-based Information Retrieval and Knowledge Management.
NTCIR
Jun'ichi Tsujii
2011 — conf
Overview of BioNLP 2011 Protein Coreference Shared Task.
BioNLP@ACL (Shared Task)
Ngan L. T. Nguyen, Jin-Dong Kim, Jun'ichi Tsujii
2011 — conf
Overview of BioNLP Shared Task 2011.
BioNLP@ACL (Shared Task)
Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Robert Bossy, Ngan L. T. Nguyen, Jun'ichi Tsujii
2011 — conf
Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011.
BioNLP@ACL (Shared Task)
Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
2011 — conf
Overview of the Epigenetics and Post-translational Modifications (EPI) task of BioNLP Shared Task 2011.
BioNLP@ACL (Shared Task)
Tomoko Ohta, Sampo Pyysalo, Jun'ichi Tsujii
2011 — conf
Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011.
BioNLP@ACL (Shared Task)
Sampo Pyysalo, Tomoko Ohta, Rafal Rak, Daniel E. Sullivan, Chunhong Mao, Chunxia Wang, Bruno W. S. Sobral, Jun'ichi Tsujii, Sophia Ananiadou
2011 — conf
Poster: Analysis of gene ranking algorithms with extraction of relevant biomedical concepts from PubMed publications.
ICCABS
Simon Kocbek, Rune Sætre, Gregor Stiglic, Jin-Dong Kim, Igor Pernek, Yoshimasa Tsuruoka, Peter Kokol, Sophia Ananiadou, Jun'ichi Tsujii
2011 — ed.
Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011
BioNLP@ACL (Shared Task)
Jun'ichi Tsujii, Jin-Dong Kim, Sampo Pyysalo
2011 — ed.
Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, BioNLP@ACL, Portland, Oregon, USA, June 23-24, 2011
BioNLP@ACL
Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber
2011 — conf
SMT Systems in the University of Tokyo for NTCIR-9 PatentMT.
NTCIR
Xianchao Wu, Takuya Matsuzaki, Jun'ichi Tsujii
2011 — conf
SimSem: Fast Approximate String Matching in Relation to Semantic Category Disambiguation.
BioNLP@ACL
Pontus Stenetorp, Sampo Pyysalo, Jun'ichi Tsujii
2011 — conf
Towards Exhaustive Event Extraction for Protein Modifications.
BioNLP@ACL
Sampo Pyysalo, Tomoko Ohta, Makoto Miwa, Jun'ichi Tsujii
2011 J jnl
U-Compare bio-event meta-service: compatible BioNLP event extraction services.
BMC Bioinform.
Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
2011 J jnl
U-Compare: A modular NLP workflow construction and evaluation system.
IBM J. Res. Dev.
Yoshinobu Kano, Makoto Miwa, K. Bretonnel Cohen, Lawrence Hunter, Sophia Ananiadou, Jun'ichi Tsujii
2010 — conf
A Comparative Study of Syntactic Parsers for Event Extraction.
BioNLP@ACL
Makoto Miwa, Sampo Pyysalo, Tadayoshi Hara, Jun'ichi Tsujii
2010 B conf
A Japanese Particle Corpus Built by Example-Based Annotation.
LREC
Hiroki Hanaoka, Hideki Mima, Jun'ichi Tsujii
2010 C conf
A Modular Architecture for the Wide-Coverage Translation of Natural Language Texts into Predicate Logic Formulas.
PACLIC
Yusuke Miyao, Alastair Butler, Kei Yoshimoto, Jun'ichi Tsujii
2010 J jnl
A Re-Evaluation of Biomedical Named Entity-Term Relations.
J. Bioinform. Comput. Biol.
Tomoko Ohta, Sampo Pyysalo, Jin-Dong Kim, Jun'ichi Tsujii
2010 — conf
A Simple Approach for HPSG Supertagging Using Dependency Information.
HLT-NAACL
Yao-Zhong Zhang, Takuya Matsuzaki, Jun'ichi Tsujii
2010 — conf
An Analysis of gene/protein associations at PubMed scale.
Semantic Mining in Biomedicine
Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
2010 J jnl
Building a high-quality sense inventory for improved abbreviation disambiguation.
Bioinform.
Naoaki Okazaki, Sophia Ananiadou, Jun'ichi Tsujii
2010 J jnl
Complex event extraction at PubMed scale.
Bioinform.
Jari Björne, Filip Ginter, Sampo Pyysalo, Jun'ichi Tsujii, Tapio Salakoski
2010 — ch.
Dependency Parsing and Domain Adaptation with Data-Driven LR Models and Parser Ensembles.
Trends in Parsing Technology
Kenji Sagae, Jun'ichi Tsujii
2010 — conf
Design and Implementation of GXP Make - A Workflow System Based on Make.
eScience
Kenjiro Taura, Takuya Matsuzaki, Makoto Miwa, Yoshikazu Kamoshida, Daisaku Yokoyama, Nan Dun, Takeshi Shibata, Choi Sung Jun, Jun'ichi Tsujii
2010 J jnl
Disambiguating the species of biomedical named entities using natural language parsers.
Bioinform.
Xinglong Wang, Jun'ichi Tsujii, Sophia Ananiadou
2010 B conf
Entity-Focused Sentence Simplification for Relation Extraction.
COLING
Makoto Miwa, Rune Sætre, Yusuke Miyao, Jun'ichi Tsujii
2010 B conf
Evaluating Dependency Representations for Event Extraction.
COLING
Makoto Miwa, Sampo Pyysalo, Tadayoshi Hara, Jun'ichi Tsujii
2010 — ch.
Evaluating the Impact of Re-training a Lexical Disambiguation Model on Domain Adaptation of an HPSG Parser.
Trends in Parsing Technology
Tadayoshi Hara, Yusuke Miyao, Jun'ichi Tsujii
2010 — conf
Event Extraction for Post-Translational Modifications.
BioNLP@ACL
Tomoko Ohta, Sampo Pyysalo, Makoto Miwa, Jin-Dong Kim, Jun'ichi Tsujii
2010 J jnl
Event Extraction with Complex Event Classification Using Rich Features.
J. Bioinform. Comput. Biol.
Makoto Miwa, Rune Sætre, Jin-Dong Kim, Jun'ichi Tsujii
2010 — conf
Event extraction for DNA methylation.
Semantic Mining in Biomedicine
Tomoko Ohta, Sampo Pyysalo, Makoto Miwa, Jun'ichi Tsujii
2010 J jnl
Extracting Protein Interactions from Text with the Unified AkaneRE Event Extraction System.
IEEE ACM Trans. Comput. Biol. Bioinform.
Rune Sætre, Kazuhiro Yoshida, Makoto Miwa, Takuya Matsuzaki, Yoshinobu Kano, Jun'ichi Tsujii
2010 A* conf
Fine-Grained Tree-to-String Translation Rule Extraction.
ACL
Xianchao Wu, Takuya Matsuzaki, Jun'ichi Tsujii
2010 B conf
Forest-guided Supertagger Training.
COLING
Yao-Zhong Zhang, Takuya Matsuzaki, Jun'ichi Tsujii
2010 — ch.
HPSG Parsing with a Supertagger.
Trends in Parsing Technology
Takashi Ninomiya, Takuya Matsuzaki, Yusuke Miyao, Yoshimasa Tsuruoka, Jun'ichi Tsujii
2010 — conf
Imbalanced Classification Using Dictionary-based Prototypes and Hierarchical Decision Rules for Entity Sense Disambiguation.
COLING (Posters)
Tingting Mu, Xinglong Wang, Jun'ichi Tsujii, Sophia Ananiadou
2010 J jnl
Improve syntax-based translation using deep syntactic structures.
Mach. Transl.
Xianchao Wu, Takuya Matsuzaki, Jun'ichi Tsujii
2010 J jnl
Improving the Inter-Corpora Compatibility for protein Annotations.
J. Bioinform. Comput. Biol.
Yue Wang, Jin-Dong Kim, Rune Sætre, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
2010 J jnl
Medie and Info-pubmed: 2010 update.
BMC Bioinform.
Tomoko Ohta, Takuya Matsuzaki, Naoaki Okazaki, Makoto Miwa, Rune Sætre, Sampo Pyysalo, Jun'ichi Tsujii
2010 J jnl
PathText: a text mining integrator for biological pathway visualizations.
Bioinform.
Brian Kemper, Takuya Matsuzaki, Yukiko Matsuoka, Yoshimasa Tsuruoka, Hiroaki Kitano, Sophia Ananiadou, Jun'ichi Tsujii
2010 — ed.
Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010
BioNLP@ACL
K. Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber
2010 B conf
Robust Measurement and Comparison of Context Similarity for Finding Translation Pairs.
COLING
Daniel Andrade, Tetsuya Nasukawa, Jun'ichi Tsujii
2010 — conf
Scaling up Biomedical Event Extraction to the Entire PubMed.
BioNLP@ACL
Jari Björne, Filip Ginter, Sampo Pyysalo, Jun'ichi Tsujii, Tapio Salakoski
2010 — conf
Semi-automatically Developing Chinese HPSG Grammar from the Penn Chinese Treebank for Deep Parsing.
COLING (Posters)
Kun Yu, Yusuke Miyao, Xiangli Wang, Takuya Matsuzaki, Jun'ichi Tsujii
2010 B conf
Simple and Efficient Algorithm for Approximate Dictionary Matching.
COLING
Naoaki Okazaki, Jun'ichi Tsujii
2010 J jnl
Text mining meets workflow: linking U-Compare with Taverna.
Bioinform.
Yoshinobu Kano, Paul D. Dobson, Mio Nakanishi, Jun'ichi Tsujii, Sophia Ananiadou
2010 — conf
The Deep Re-Annotation in a Chinese Scientific Treebank.
Linguistic Annotation Workshop
Kun Yu, Xiangli Wang, Yusuke Miyao, Takuya Matsuzaki, Jun'ichi Tsujii
2010 — conf
Towards Event Extraction from Full Texts on Infectious Diseases.
BioNLP@ACL
Sampo Pyysalo, Tomoko Ohta, Han-Cheol Cho, Daniel E. Sullivan, Chunhong Mao, Bruno W. S. Sobral, Jun'ichi Tsujii, Sophia Ananiadou
2010 B conf
U-Compare: An Integrated Language Resource Evaluation Platform Including a Comprehensive UIMA Resource Library.
LREC
Yoshinobu Kano, Rubén Dorado, Luke McCrohon, Sophia Ananiadou, Jun'ichi Tsujii
2009 J jnl
A Chinese-Japanese Lexical Machine Translation through a Pivot Language.
ACM Trans. Asian Lang. Inf. Process.
Takashi Tsunakawa, Naoaki Okazaki, Xiao Liu, Jun'ichi Tsujii
2009 — conf
A Comparative Study on Generalization of Semantic Roles in FrameNet.
ACL/IJCNLP
Yuichiroh Matsubayashi, Naoaki Okazaki, Jun'ichi Tsujii
2009 — conf
A Discriminative Latent Variable Chinese Segmenter with Hybrid Word/Character Information.
HLT-NAACL
Xu Sun, Yao-Zhong Zhang, Takuya Matsuzaki, Yoshimasa Tsuruoka, Jun'ichi Tsujii
2009 — conf
A Markov Logic Approach to Bio-Molecular Event Extraction.
BioNLP@HLT-NAACL (Shared Task)
Sebastian Riedel, Hong-Woo Chun, Toshihisa Takagi, Jun'ichi Tsujii
2009 — conf
A Novel Word Segmentation Approach for Written Languages with Word Boundary Markers.
ACL/IJCNLP (2)
Han-Cheol Cho, Do-Gil Lee, Jung-Tae Lee, Pontus Stenetorp, Jun'ichi Tsujii, Hae-Chang Rim
2009 A* conf
A Rich Feature Vector for Protein-Protein Interaction Extraction from Multiple Corpora.
EMNLP
Makoto Miwa, Rune Sætre, Yusuke Miyao, Jun'ichi Tsujii
2009 — conf
Bridging the Gap between Domain-Oriented and Linguistically-Oriented Semantics.
BioNLP@HLT-NAACL
Sumire Uematsu, Jin-Dong Kim, Jun'ichi Tsujii
2009 A* conf
Classifying Relations for Biomedical Named Entity Disambiguation.
EMNLP
Xinglong Wang, Jun'ichi Tsujii, Sophia Ananiadou
2009 A* conf
Descriptive and Empirical Approaches to Capturing Underlying Dependencies among Parsing Errors.
EMNLP
Tadayoshi Hara, Yusuke Miyao, Jun'ichi Tsujii
2009 C conf
Design of Chinese HPSG Framework for Data-Driven Parsing.
PACLIC
Xiangli Wang, Shun'ya Iwasawa, Yusuke Miyao, Takuya Matsuzaki, Kun Yu, Jun'ichi Tsujii
2009 — conf
Effective Analysis of Causes and Inter-dependencies of Parsing Errors.
IWPT
Tadayoshi Hara, Yusuke Miyao, Jun'ichi Tsujii
2009 — conf
Evaluating Contribution of Deep Syntactic Information to Shallow Semantic Analysis.
IWPT
Sumire Uematsu, Jun'ichi Tsujii
2009 J jnl
Evaluating contributions of natural language parsers to protein-protein interaction extraction.
Bioinform.
Yusuke Miyao, Kenji Sagae, Rune Sætre, Takuya Matsuzaki, Jun'ichi Tsujii
2009 — conf
Extracting Bilingual Dictionary from Comparable Corpora with Dependency Heterogeneity.
HLT-NAACL (Short Papers)
Kun Yu, Jun'ichi Tsujii
2009 A conf
Fast Full Parsing by Linear-Chain Conditional Random Fields.
EACL
Yoshimasa Tsuruoka, Jun'ichi Tsujii, Sophia Ananiadou
2009 — conf
From Protein-Protein Interaction to Molecular Event Extraction.
BioNLP@HLT-NAACL (Shared Task)
Rune Sætre, Makoto Miwa, Kazuhiro Yoshida, Jun'ichi Tsujii
2009 C conf
GuideLink: A Corpus Annotation System that Integrates the Management of Annotation Guidelines.
PACLIC
Kenta Oouchida, Jin-Dong Kim, Toshihisa Takagi, Jun'ichi Tsujii
2009 — conf
HPSG Supertagging: A Sequence Labeling View.
IWPT
Yao-Zhong Zhang, Takuya Matsuzaki, Jun'ichi Tsujii
2009 J jnl
Hozumi Tanaka.
Comput. Linguistics
Timothy Baldwin, Takenobu Tokunaga, Jun'ichi Tsujii
2009 — conf
Incorporating GENETAG-style annotation to GENIA corpus.
BioNLP@HLT-NAACL
Tomoko Ohta, Jin-Dong Kim, Sampo Pyysalo, Yue Wang, Jun'ichi Tsujii
2009 J jnl
Investigating heterogeneous protein annotations toward cross-corpora utilization.
BMC Bioinform.
Yue Wang, Jin-Dong Kim, Rune Sætre, Sampo Pyysalo, Jun'ichi Tsujii
2009 A* conf
Latent Variable Perceptron Algorithm for Structured Classification.
IJCAI
Xu Sun, Takuya Matsuzaki, Daisuke Okanohara, Jun'ichi Tsujii
2009 — conf
Learning Combination Features with L1 Regularization.
HLT-NAACL (Short Papers)
Daisuke Okanohara, Jun'ichi Tsujii
2009 J jnl
On Contribution of Sense Dependencies to Word Sense Disambiguation.
Inf. Media Technol.
Jun Hatori, Yusuke Miyao, Jun'ichi Tsujii
2009 A conf
Opinion classification with tree kernel SVM using linguistic modality analysis.
CIKM
Takeshi S. Kobayakawa, Tadashi Kumano, Hideki Tanaka, Naoaki Okazaki, Jin-Dong Kim, Jun'ichi Tsujii
2009 — conf
Overview of BioNLP'09 Shared Task on Event Extraction.
BioNLP@HLT-NAACL (Shared Task)
Jin-Dong Kim, Tomoko Ohta, Sampo Pyysalo, Yoshinobu Kano, Jun'ichi Tsujii
2009 — ed.
Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder, Colorado, USA, June 4-5, 2009
BioNLP@HLT-NAACL
Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber
2009 J jnl
Protein-protein interaction extraction by leveraging multiple kernels and parsers.
Int. J. Medical Informatics
Makoto Miwa, Rune Sætre, Yusuke Miyao, Jun'ichi Tsujii
2009 — conf
Robust Approach to Abbreviating Terms: A Discriminative Latent Variable Model with Global Information.
ACL/IJCNLP
Xu Sun, Naoaki Okazaki, Jun'ichi Tsujii
2009 — conf
Semi-Supervised Lexicon Mining from Parenthetical Expressions in Monolingual Web Pages.
HLT-NAACL
Xianchao Wu, Naoaki Okazaki, Jun'ichi Tsujii
2009 A conf
Sequential Labeling with Latent Variables: An Exact Inference Algorithm and its Efficient Approximation.
EACL
Xu Sun, Jun'ichi Tsujii
2009 — conf
Static Relations: a Piece in the Biomedical Information Extraction Puzzle.
BioNLP@HLT-NAACL
Sampo Pyysalo, Tomoko Ohta, Jin-Dong Kim, Jun'ichi Tsujii
2009 — conf
Stochastic Gradient Descent Training for L1-regularized Log-linear Models with Cumulative Penalty.
ACL/IJCNLP
Yoshimasa Tsuruoka, Jun'ichi Tsujii, Sophia Ananiadou
2009 A* conf
Supervised Learning of a Probabilistic Lexicon of Verb Semantic Classes.
EMNLP
Yusuke Miyao, Jun'ichi Tsujii
2009 J jnl
Tag-Annotated Text Search Using Extended Region Algebra.
IEICE Trans. Inf. Syst.
Katsuya Masuda, Jun'ichi Tsujii
2009 A conf
Text Categorization with All Substring Features.
SDM
Daisuke Okanohara, Jun'ichi Tsujii
2009 — conf
The UOT system.
IWSLT (Evaluation Campaign)
Xianchao Wu, Takuya Matsuzaki, Naoaki Okazaki, Yusuke Miyao, Jun'ichi Tsujii
2009 — conf
The UOT system: improve string-to-tree translation using head-driven phrase structure grammar and predicate-argument structures.
IWSLT
Xianchao Wu, Takuya Matsuzaki, Naoaki Okazaki, Yusuke Miyao, Jun'ichi Tsujii
2009 J jnl
U-Compare: share and compare text mining tools with UIMA.
Bioinform.
Yoshinobu Kano, William A. Baumgartner Jr., Luke McCrohon, Sophia Ananiadou, K. Bretonnel Cohen, Lawrence Hunter, Jun'ichi Tsujii
2008 B conf
A Discriminative Alignment Model for Abbreviation Recognition.
COLING
Naoaki Okazaki, Sophia Ananiadou, Jun'ichi Tsujii
2008 B conf
A Discriminative Approach to Japanese Abbreviation Extraction.
IJCNLP
Naoaki Okazaki, Mitsuru Ishizuka, Jun'ichi Tsujii
2008 A* conf
A Discriminative Candidate Generator for String Transformations.
EMNLP
Naoaki Okazaki, Yoshimasa Tsuruoka, Sophia Ananiadou, Jun'ichi Tsujii
2008 — conf
Accelerating the Annotation of Sparse Named Entities by Dynamic Sentence Selection.
BioNLP
Yoshimasa Tsuruoka, Jun'ichi Tsujii, Sophia Ananiadou
2008 J jnl
Accelerating the annotation of sparse named entities by dynamic sentence selection.
BMC Bioinform.
Yoshimasa Tsuruoka, Jun'ichi Tsujii, Sophia Ananiadou
2008 B conf
Bilingual Synonym Identification with Spelling Variations.
IJCNLP
Takashi Tsunakawa, Jun'ichi Tsujii
2008 B conf
Building Bilingual Lexicons using Lexical Translation Probabilities via Pivot Languages.
LREC
Takashi Tsunakawa, Naoaki Okazaki, Jun'ichi Tsujii
2008 — conf
Building a Bilingual Lexicon Using Phrase-based Statistical Machine Translation via a Pivot Language.
COLING (Posters)
Takashi Tsunakawa, Naoaki Okazaki, Jun'ichi Tsujii
2008 B conf
Challenges in Pronoun Resolution System for Biomedical Text.
LREC
Ngan L. T. Nguyen, Jin-Dong Kim, Jun'ichi Tsujii
2008 B conf
Comparative Parser Performance Analysis across Grammar Frameworks through Automatic Tree Conversion using Synchronous Grammars.
COLING
Takuya Matsuzaki, Jun'ichi Tsujii
2008 B conf
Connecting Text Mining and Pathways using the PathText Resource.
LREC
Rune Sætre, Brian Kemper, Kanae Oda, Naoaki Okazaki, Yukiko Matsuoka, Norihiro Kikuchi, Hiroaki Kitano, Yoshimasa Tsuruoka, Sophia Ananiadou, Jun'ichi Tsujii
2008 — conf
Coreference Resolution in Biomedical Texts: a Machine Learning Approach.
Ontologies and Text Mining for Life Sciences
Jian Su, Xiaofeng Yang, Huaqing Hong, Yuka Tateisi, Jun'ichi Tsujii
2008 J jnl
Corpus annotation for mining biomedical events from literature.
BMC Bioinform.
Jin-Dong Kim, Tomoko Ohta, Jun'ichi Tsujii
2008 — conf
Evaluating the Effects of Treebank Size in a Practical Application for Parsing.
SETQALNLP
Kenji Sagae, Yusuke Miyao, Rune Saetre, Jun'ichi Tsujii
2008 — conf
Exact Inference for Multi-label Classification using Sparse Graphical Models.
COLING (Posters)
Yusuke Miyao, Jun'ichi Tsujii
2008 J jnl
FACTA: a text search engine for finding associated biomedical concepts.
Bioinform.
Yoshimasa Tsuruoka, Jun'ichi Tsujii, Sophia Ananiadou
2008 J jnl
Feature Forest Models for Probabilistic HPSG Parsing.
Comput. Linguistics
Yusuke Miyao, Jun'ichi Tsujii
2008 Misc conf
Filling the Gaps Between Tools and Users: A Tool Comparator, Using Protein-Protein Interactions as an Example.
Pacific Symposium on Biocomputing
Yoshinobu Kano, Ngan L. T. Nguyen, Rune Sætre, Kazuhiro Yoshida, Yusuke Miyao, Yoshimasa Tsuruoka, Yuichiroh Matsubayashi, Sophia Ananiadou, Jun'ichi Tsujii
2008 B conf
From Text to Pathway: Corpus Annotation for Knowledge Acquisition from Biomedical Literature.
APBC
Jin-Dong Kim, Tomoko Ohta, Kanae Oda, Jun'ichi Tsujii
2008 B conf
GENIA-GR: a Grammatical Relation Corpus for Parser Evaluation in the Biomedical Domain.
LREC
Yuka Tateisi, Yusuke Miyao, Kenji Sagae, Jun'ichi Tsujii
2008 Misc conf
Improving English-to-Chinese Translation for Technical Terms using Morphological Information.
AMTA
Xianchao Wu, Naoaki Okazaki, Takashi Tsunakawa, Jun'ichi Tsujii
2008 A* conf
Kleio: a knowledge-enriched information retrieval system for biology.
SIGIR
Chikashi Nobata, Philip Cotter, Naoaki Okazaki, Brian Rea, Yutaka Sasaki, Yoshimasa Tsuruoka, Jun'ichi Tsujii, Sophia Ananiadou
2008 B conf
Modeling Latent-Dynamic in Shallow Parsing: A Latent Conditional Model with Imrpoved Inference.
COLING
Xu Sun, Louis-Philippe Morency, Daisuke Okanohara, Yoshimasa Tsuruoka, Jun'ichi Tsujii
2008 A conf
Nested region algebra extended with variables for tag-annotated text search.
CIKM
Katsuya Masuda, Jun'ichi Tsujii
2008 J jnl
New challenges for text mining: mapping between text and manually curated pathways.
BMC Bioinform.
Kanae Oda, Jin-Dong Kim, Tomoko Ohta, Daisuke Okanohara, Takuya Matsuzaki, Yuka Tateisi, Jun'ichi Tsujii
2008 — conf
Prediction of Protein Sub-cellular Localization using Information from Texts and Sequences.
BioNLP
Hong-Woo Chun, Chisato Yamasaki, Naomi Saichi, Masayuki Tanaka, Teruyoshi Hishiki, Tadashi Imanishi, Takashi Gojobori, Jin-Dong Kim, Jun'ichi Tsujii, Toshihisa Takagi
2008 — ed.
Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, BioNLP 2008, Columbus, Ohio, USA, June 19, 2008
BioNLP
Dina Demner-Fushman, Sophia Ananiadou, Kevin Bretonnel Cohen, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber
2008 — conf
Raising the Compatibility of Heterogeneous Annotations: A Case Study on.
BioNLP
Yue Wang, Kazuhiro Yoshida, Jin-Dong Kim, Rune Saetre, Jun'ichi Tsujii
2008 B conf
Shift-Reduce Dependency DAG Parsing.
COLING
Kenji Sagae, Jun'ichi Tsujii
2008 A* conf
Task-oriented Evaluation of Syntactic Parsers and Their Representations.
ACL
Yusuke Miyao, Rune Sætre, Kenji Sagae, Takuya Matsuzaki, Jun'ichi Tsujii
2008 J jnl
Themes in biomedical natural language processing: BioNLP08.
BMC Bioinform.
Dina Demner-Fushman, Sophia Ananiadou, K. Bretonnel Cohen, John Pestian, Jun'ichi Tsujii, Bonnie L. Webber
2008 B conf
Towards Data and Goal Oriented Analysis: Tool Inter-operability and Combinatorial Comparison.
IJCNLP
Yoshinobu Kano, Ngan L. T. Nguyen, Rune Sætre, Kazuhiro Yoshida, Keiichiro Fukamachi, Yusuke Miyao, Yoshimasa Tsuruoka, Sophia Ananiadou, Jun'ichi Tsujii
2008 — conf
Word Sense Disambiguation for All Words using Tree-Structured Conditional Random Fields.
COLING (Posters)
Jun Hatori, Yusuke Miyao, Jun'ichi Tsujii
2007 A* conf
A discriminative language model with pseudo-negative samples.
ACL
Daisuke Okanohara, Jun'ichi Tsujii
2007 — conf
A log-linear model with an n-gram reference distribution for accurate HPSG parsing.
IWPT
Takashi Ninomiya, Takuya Matsuzaki, Yusuke Miyao, Jun'ichi Tsujii
2007 A* conf
Ambiguous Part-of-Speech Tagging for Improving Accuracy and Domain Portability of Syntactic Parsers.
IJCAI
Kazuhiro Yoshida, Yoshimasa Tsuruoka, Yusuke Miyao, Jun'ichi Tsujii
2007 — conf
Dependency Parsing and Domain Adaptation with LR Models and Parser Ensembles.
EMNLP-CoNLL
Kenji Sagae, Jun'ichi Tsujii
2007 — conf
Development of a Japanese-Chinese machine translation system.
MTSummit
Hitoshi Isahara, Sadao Kurohashi, Jun'ichi Tsujii, Kiyotaka Uchimoto, Hiroshi Nakagawa, Hiroyuki Kaji, Shun'ichi Kikuchi
2007 A* conf
Efficient HPSG Parsing with Supertagging and CFG-Filtering.
IJCAI
Takuya Matsuzaki, Yusuke Miyao, Jun'ichi Tsujii
2007 — conf
Evaluating Impact of Re-training a Lexical Disambiguation Model on Domain Adaptation of an HPSG Parser.
IWPT
Tadayoshi Hara, Yusuke Miyao, Jun'ichi Tsujii
2007 A* conf
HPSG Parsing with Shallow Dependency Constraints.
ACL
Kenji Sagae, Yusuke Miyao, Jun'ichi Tsujii
2007 J jnl
Learning string similarity measures for gene/protein name dictionary look-up using logistic regression.
Bioinform.
Yoshimasa Tsuruoka, John McNaught, Jun'ichi Tsujii, Sophia Ananiadou
2007 — conf
Move Prediction in Go with the Maximum Entropy Method.
CIG
Nobuo Araki, Kazuhiro Yoshida, Yoshimasa Tsuruoka, Jun'ichi Tsujii
2007 — conf
Reranking for Biomedical Named-Entity Recognition.
BioNLP@ACL
Kazuhiro Yoshida, Jun'ichi Tsujii
2007 — conf
Syntactic Features for Protein-Protein Interaction Extraction.
LBM (Short Papers)
Rune Sætre, Kenji Sagae, Jun'ichi Tsujii
2006 A* conf
An Intelligent Search Engine and GUI-based Efficient MEDLINE Search Tool Based on Deep Syntactic Parsing.
ACL
Tomoko Ohta, Yusuke Miyao, Takashi Ninomiya, Yoshimasa Tsuruoka, Akane Yakushiji, Katsuya Masuda, Jumpei Takeuchi, Kazuhiro Yoshida, Tadayoshi Hara, Jin-Dong Kim, Yuka Tateisi, Jun'ichi Tsujii
2006 A* conf
Automatic Construction of Predicate-argument Structure Patterns for Biomedical Information Extraction.
EMNLP
Akane Yakushiji, Yusuke Miyao, Tomoko Ohta, Yuka Tateisi, Jun'ichi Tsujii
2006 — conf
Automatic Recognition of Topic-Classified Relations between Prostate Cancer and Genes from Medline Abstracts.
SMBM
Hong-Woo Chun, Yoshimasa Tsuruoka, Jin-Dong Kim, Rie Shiba, Naoki Nagata, Teruyoshi Hishiki, Jun'ichi Tsujii
2006 J jnl
Automatic recognition of topic-classified relations between prostate cancer and genes using MEDLINE abstracts.
BMC Bioinform.
Hong-Woo Chun, Yoshimasa Tsuruoka, Jin-Dong Kim, Rie Shiba, Naoki Nagata, Teruyoshi Hishiki, Jun'ichi Tsujii
2006 Misc conf
Extraction of Gene-Disease Relations from Medline Using Domain Dictionaries and Machine Learning.
Pacific Symposium on Biocomputing
Hong-Woo Chun, Yoshimasa Tsuruoka, Jin-Dong Kim, Rie Shiba, Naoki Nagata, Teruyoshi Hishiki, Jun'ichi Tsujii
2006 A* conf
Extremely Lexicalized Models for Accurate and Fast HPSG Parsing.
EMNLP
Takashi Ninomiya, Takuya Matsuzaki, Yoshimasa Tsuruoka, Yusuke Miyao, Jun'ichi Tsujii
2006 A* conf
Improving the Scalability of Semi-Markov Conditional Random Fields for Named Entity Recognition.
ACL
Daisuke Okanohara, Yusuke Miyao, Yoshimasa Tsuruoka, Jun'ichi Tsujii
2006 B conf
Linguistic and Biological Annotations of Biological Interaction Events.
LREC
Tomoko Ohta, Yuka Tateisi, Jin-Dong Kim, Akane Yakushiji, Jun'ichi Tsujii
2006 A* conf
Semantic Retrieval for the Accurate Identification of Relational Concepts in Massive Textbases.
ACL
Yusuke Miyao, Tomoko Ohta, Katsuya Masuda, Yoshimasa Tsuruoka, Kazuhiro Yoshida, Takashi Ninomiya, Jun'ichi Tsujii
2006 — conf
Subdomain adaptation of a POS tagger with a small corpus.
BioNLP@NAACL-HLT
Yuka Tateisi, Yoshimasa Tsuruoka, Jun'ichi Tsujii
2006 A* conf
Translating HPSG-Style Outputs of a Robust Parser into Typed Dynamic Logic.
ACL
Manabu Sato, Daisuke Bekki, Yusuke Miyao, Jun'ichi Tsujii
2006 A* conf
Trimming CFG Parse Trees for Sentence Compression Using Machine Learning Approaches.
ACL
Yuya Unno, Takashi Ninomiya, Yusuke Miyao, Jun'ichi Tsujii
2005 — conf
A Machine Learning Approach to Acronym Generation.
LBLODMBS@IDMB
Yoshimasa Tsuruoka, Sophia Ananiadou, Jun'ichi Tsujii
2005 B conf
Adapting a Probabilistic Disambiguation Model of an HPSG Parser to a New Domain.
IJCNLP
Tadayoshi Hara, Yusuke Miyao, Jun'ichi Tsujii
2005 B conf
Assigning Polarity Scores to Reviews Using Machine Learning Techniques.
IJCNLP
Daisuke Okanohara, Jun'ichi Tsujii
2005 — conf
Bidirectional Inference with the Easiest-First Strategy for Tagging Sequence Data.
HLT/EMNLP
Yoshimasa Tsuruoka, Jun'ichi Tsujii
2005 — conf
Chunk Parsing Revisited.
IWPT
Yoshimasa Tsuruoka, Jun'ichi Tsujii
2005 — conf
Developing a Robust Part-of-Speech Tagger for Biomedical Text.
Panhellenic Conference on Informatics
Yoshimasa Tsuruoka, Yuka Tateishi, Jin-Dong Kim, Tomoko Ohta, John McNaught, Sophia Ananiadou, Jun'ichi Tsujii
2005 — conf
Efficacy of Beam Thresholding, Unification Filtering and Hybrid Parsing in Probabilistic HPSG Parsing.
IWPT
Takashi Ninomiya, Yoshimasa Tsuruoka, Yusuke Miyao, Jun'ichi Tsujii
2005 J jnl
MaSTerClass: a case-based reasoning system for the classification of biomedical terms.
Bioinform.
Irena Spasic, Sophia Ananiadou, Jun'ichi Tsujii
2005 J jnl
Maximum Entropy Models with Inequality Constraints: A Case Study on Text Categorization.
Mach. Learn.
Jun'ichi Kazama, Jun'ichi Tsujii
2005 B ed.
Natural Language Processing - IJCNLP 2004, First International Joint Conference, Hainan Island, China, March 22-24, 2004, Revised Selected Papers
IJCNLP
Keh-Yih Su, Jun'ichi Tsujii, Jong-Hyeok Lee, Oi Yee Kwong
2005 A* conf
Probabilistic CFG with Latent Annotations.
ACL
Takuya Matsuzaki, Yusuke Miyao, Jun'ichi Tsujii
2005 A* conf
Probabilistic Disambiguation Models for Wide-Coverage HPSG Parsing.
ACL
Yusuke Miyao, Jun'ichi Tsujii
2005 — conf
Probabilistic Models for Disambiguation of an HPSG-Based Chart Generator.
IWPT
Hiroko Nakanishi, Yusuke Miyao, Jun'ichi Tsujii
2005 — conf
Syntax Annotation for the GENIA Corpus.
IJCNLP (companion)
Yuka Tateisi, Akane Yakushiji, Tomoko Ohta, Jun'ichi Tsujii
2005 J jnl
Thesaurus or Logical Ontology, Which One Do We Need for Text Mining?
Lang. Resour. Evaluation
Jun'ichi Tsujii, Sophia Ananiadou
2004 B conf
A Persistent Feature-Object Database for Intelligent Text Archive Systems.
IJCNLP
Takashi Ninomiya, Jun'ichi Tsujii, Yusuke Miyao
2004 — conf
Context-free Approximation of LTAG towards CFG Filtering.
TAG+
Kenta Oouchida, Naoki Yoshinaga, Jun'ichi Tsujii
2004 B conf
Corpus-Oriented Grammar Development for Acquiring a Head-Driven Phrase Structure Grammar from the Penn Treebank.
IJCNLP
Yusuke Miyao, Takashi Ninomiya, Jun'ichi Tsujii
2004 B conf
Deep Linguistic Analysis for the Accurate Identification of Predicate-Argument Relations.
COLING
Yusuke Miyao, Jun'ichi Tsujii
2004 — conf
Finding Anchor Verbs for Biomedical IE Using Predicate-Argument Structures.
ACL (Poster and Demonstration)
Akane Yakushiji, Yuka Tateisi, Yusuke Miyao, Jun'ichi Tsujii
2004 — conf
Generalizing Subcategorization Frames Acquired from Corpora Using Lexicalized Grammars.
TAG+
Naoki Yoshinaga, Jun'ichi Tsujii
2004 — conf
How long will we be able to ignore linguistic knowledge and their formalisms?
IWSLT
Jun'ichi Tsujii
2004 J jnl
Improving the performance of dictionary-based approaches in protein name recognition.
J. Biomed. Informatics
Yoshimasa Tsuruoka, Jun'ichi Tsujii
2004 J jnl
Introduction: named entity recognition in biomedicine.
J. Biomed. Informatics
Sophia Ananiadou, Carol Friedman, Jun'ichi Tsujii
2004 B conf
Iterative CKY Parsing for Probabilistic Context-Free Grammars.
IJCNLP
Yoshimasa Tsuruoka, Jun'ichi Tsujii
2004 — conf
Overview of the IWSLT04 evaluation campaign.
IWSLT
Yasuhiro Akiba, Marcello Federico, Noriko Kando, Hiromi Nakaiwa, Michael Paul, Jun'ichi Tsujii
2004 B conf
Part-of-Speech Annotation of Biology Research Abstracts.
LREC
Yuka Tateisi, Jun'ichi Tsujii
2004 B conf
Word Folding: Taking the Snapshot of Words Instead of the Whole.
IJCNLP
Jin-Dong Kim, Jun'ichi Tsujii
2003 — conf
A Debug Tool for Practical Grammar Development.
ACL (Companion)
Akane Yakushiji, Yuka Tateisi, Yusuke Miyao, Naoki Yoshinaga, Jun'ichi Tsujii
2003 — conf
A Robust Retrieval Engine for Proximal and Structural Search.
HLT-NAACL
Katsuya Masuda, Takashi Ninomiya, Yusuke Miyao, Tomoko Ohta, Jun'ichi Tsujii
2003 B conf
A model of syntactic disambiguation based on lexicalized grammars.
CoNLL
Yusuke Miyao, Jun'ichi Tsujii
2003 B conf
An efficient clustering algorithm for class-based language models.
CoNLL
Takuya Matsuzaki, Yusuke Miyao, Jun'ichi Tsujii
2003 — conf
Boosting Precision and Recall of Dictionary-Based Protein Name Recognition.
BioNLP@ACL
Yoshimasa Tsuruoka, Jun'ichi Tsujii
2003 — conf
Comparison between CFG Filtering Techniques for LTAG and HPSG.
ACL (Companion)
Naoki Yoshinaga, Kentaro Torisawa, Jun'ichi Tsujii
2003 — conf
Encoding Biomedical Resources in TEI: The Case of the GENIA Corpus.
BioNLP@ACL
Tomaz Erjavec, Jin-Dong Kim, Tomoko Ohta, Yuka Tateisi, Jun'ichi Tsujii
2003 A* conf
Evaluation and Extension of Maximum Entropy Models with Inequality Constraints.
EMNLP
Jun'ichi Kazama, Jun'ichi Tsujii
2003 — ch.
Extracting Attributes and their Values from Web pages.
Web Document Analysis
Minoru Yoshida, Kentaro Torisawa, Jun'ichi Tsujii
2003 — conf
GENIA corpus - a semantically annotated corpus for bio-textmining.
ISMB (Supplement of Bioinformatics)
Jin-Dong Kim, Tomoko Ohta, Yuka Tateisi, Jun'ichi Tsujii
2003 A conf
Lexicalized Grammar Acquisition.
EACL
Yusuke Miyao, Takashi Ninomiya, Jun'ichi Tsujii
2003 A* conf
Probabilistic term variant generator for biomedical terms.
SIGIR
Yoshimasa Tsuruoka, Jun'ichi Tsujii
2003 A* conf
Self-Organizing Markov Models and Their Application to Part-of-Speech Tagging.
ACL
Jin-Dong Kim, Hae-Chang Rim, Jun'ichi Tsujii
2003 — conf
Stretching TEI: Converting the Genia Corpus.
LINC@EACL
Tomaz Erjavec, Jin-Dong Kim, Tomoko Ohta, Yuka Tateisi, Jun'ichi Tsujii
2003 B conf
Training a Naive Bayes Classifier via the EM Algorithm with a Class Distribution Constraint.
CoNLL
Yoshimasa Tsuruoka, Jun'ichi Tsujii
2002 — conf
A Formal Proof of Strong Equivalence for a Grammar Conversion from LTAG to HPSG-style.
TAG+
Naoki Yoshinaga, Yusuke Miyao, Jun'ichi Tsujii
2002 B conf
A Methodology for Terminology-based Knowledge Acquisition and Integration.
COLING
Hideki Mima, Sophia Ananiadou, Goran Nenadic, Jun'ichi Tsujii
2002 J jnl
Accomplishments and challenges in literature data mining for biology.
Bioinform.
Lynette Hirschman, Jong-Chan Park, Jun'ichi Tsujii, Limsoon Wong, Cathy H. Wu
2002 B conf
An Indexing Scheme for Typed Feature Structures.
COLING
Takashi Ninomiya, Takaki Makino, Jun'ichi Tsujii
2002 — conf
Clustering for obtaining syntactic classes of words from automatically extracted LTAG grammars.
TAG+
Tadayoshi Hara, Yusuke Miyao, Jun'ichi Tsujii
2002 B conf
Lenient Default Unification for Robust Processing within Unification Based Grammar Formalisms.
COLING
Takashi Ninomiya, Yusuke Miyao, Jun'ichi Tsujii
2002 Misc conf
Literature Data Mining for Biology - Session Introduction.
Pacific Symposium on Biocomputing
Lynette Hirschman, Jong C. Park, Jun'ichi Tsujii, Cathy H. Wu, Limsoon Wong
2002 — conf
Measuring Term Representativeness.
SCIE
Toru Hisamitsu, Jun'ichi Tsujii
2002 J jnl
Prologue.
ACM Trans. Asian Lang. Inf. Process.
Kam-Fai Wong, Jun'ichi Tsujii
2002 J jnl
Terminology-driven literature mining and knowledge acquisition in biomedicine.
Int. J. Medical Informatics
Goran Nenadic, Hideki Mima, Irena Spasic, Sophia Ananiadou, Jun'ichi Tsujii
2002 — conf
Tuning support vector machines for biomedical named entity recognition.
ACL Workshop on Natural Language Processing in the Biomedical Domain
Jun'ichi Kazama, Takaki Makino, Yoshihiro Ohta, Jun'ichi Tsujii
2001 — conf
A Maximum Entropy Tagger with Unsupervised Hidden Markov Models.
NLPRS
Jun'ichi Kazama, Yusuke Miyao, Jun'ichi Tsujii
2001 — conf
Are NLP technologies really ready for application? (Panel).
NLPRS
Jun'ichi Tsujii
2001 Misc conf
Event Extraction from Biomedical Papers Using a Full Parser.
Pacific Symposium on Biocomputing
Akane Yakushiji, Yuka Tateisi, Yusuke Miyao, Jun'ichi Tsujii
2001 — conf
LiLFeS/GENIA Project --- NLP Tools and A Biology Domain Corpus ---.
NLPRS
Jun'ichi Tsujii
2001 Misc conf
Natural Language Processing for Biology - Session Introduction.
Pacific Symposium on Biocomputing
Jun'ichi Tsujii, Limsoon Wong
2000 B conf
A Hybrid Japanese Parser with Hand-crafted Grammar and Statistics.
COLING
Hiroshi Kanayama, Kentaro Torisawa, Yutaka Mitsuishi, Jun'ichi Tsujii
2000 B conf
A Method of Measuring Term Representativeness - Baseline Method Using Co-occurrence Distribution.
COLING
Toru Hisamitsu, Yoshiki Niwa, Jun'ichi Tsujii
2000 J jnl
An HPSG parser with CFG filtering.
Nat. Lang. Eng.
Kentaro Torisawa, Kenji Nishida, Yusuke Miyao, Jun'ichi Tsujii
2000 — conf
Building an Annotated Corpus in the Molecular-Biology Domain.
SAIC@COLING
Yuka Tateisi, Tomoko Ohta, Nigel Collier, Chikashi Nobata, Jun'ichi Tsujii
2000 A* conf
Difficulty Indices for the Named Entity Task in Japanese.
ACL
Chikashi Nobata, Satoshi Sekine, Jun'ichi Tsujii
2000 B conf
Extracting the Names of Genes and Gene Products with a Hidden Markov Model.
COLING
Nigel Collier, Chikashi Nobata, Jun'ichi Tsujii
2000 A* conf
Hidden Markov Model-Based Korean Part-of-Speech Tagging Considering High Agglutinativity, Word-Spacing, and Lexical Correlativity.
ACL
Sang-Zoo Lee, Jun'ichi Tsujii, Hae-Chang Rim
2000 J jnl
Introduction to this Special Issue.
Nat. Lang. Eng.
Stephan Oepen, Dan Flickinger, Hans Uszkoreit, Jun'ichi Tsujii
2000 A* conf
Invited Talk: Generic NLP Technologies: Language, Knowledge and Information Extraction.
ACL
Jun'ichi Tsujii
2000 B conf
Lexicalized Hidden Markov Models for Part-of-Speech Tagging.
COLING
Sang-Zoo Lee, Jun'ichi Tsujii, Hae-Chang Rim
2000 A* conf
Part-of-Speech Tagging Based on Hidden Markov Model Assuming Joint Independence.
ACL
Sang-Zoo Lee, Jun'ichi Tsujii, Hae-Chang Rim
2000 J jnl
The LiLFeS Abstract Machine and its evaluation with the LinGO grammar.
Nat. Lang. Eng.
Yusuke Miyao, Takaki Makino, Kentaro Torisawa, Jun'ichi Tsujii
1999 — conf
Classifying Technical Terms.
ELPUB
Katerina T. Frantzi, Sophia Ananiadou, Jun'ichi Tsujii
1999 — conf
Machine translation for the next century.
MTSummit
Jun'ichi Tsujii
1999 A conf
The GENIA project: corpus-based knowledge acquisition and information extraction from genome research papers.
EACL
Nigel Collier, Hyun Seok Park, Norihiro Ogata, Yuka Tateishi, Chikashi Nobata, Tomoko Ohta, Tateshi Sekimizu, Hisao Imai, Katsutoshi Ibushi, Jun'ichi Tsujii
1998 — conf
An Efficient Parallel Substrate tor Typed Feature Structures on Shared Memory Parallel Machines.
COLING-ACL
Takashi Ninomiya, Kentaro Torisawa, Jun'ichi Tsujii
1998 — conf
HPSG-Style Underspecified Japanese Grammar with Wide Coverage.
COLING-ACL
Yutaka Mitsuishi, Kentaro Torisawa, Jun'ichi Tsujii
1998 — conf
LiLFes - Towards a Practical HPSG Parser.
COLING-ACL
Takaki Makino, Minoru Yoshida, Kentaro Torisawa, Jun'ichi Tsujii
1998 — conf
Packing of feature structures for optimizing the HPSG-style grammar translated from TAG.
TAG+
Yusuke Miyao, Kentaro Torisawa, Yuka Tateisi, Jun'ichi Tsujii
1998 — conf
The C-value/NC-value Method of Automatic Recognition for Multi-Word Terms.
ECDL
Katerina T. Frantzi, Sophia Ananiadou, Jun'ichi Tsujii
1998 — conf
Translating the XTAG English grammar to HPSG.
TAG+
Yuka Tateisi, Kentaro Torisawa, Yusuke Miyao, Jun'ichi Tsujii
1996 B conf
Computing Phrasal-signs in HPSG prior to Parsing.
COLING
Kentaro Torisawa, Jun'ichi Tsujii
1995 — conf
An HPSG-based Parser for Automatic Knowledge Acquisition.
IWPT
Kentaro Torisawa, Jun'ichi Tsujii
1995 J jnl
Automatic acquisition of semantic collocation from corpora.
Mach. Transl.
Satoshi Sekine, Jun'ichi Tsujii
1994 A* conf
A Computational View of the Cognitive Semantics of Spatial Prepostions.
ACL
Patrick Olivier, Jun'ichi Tsujii
1994 A* conf
Automatic Depiction of Spatial Descriptions.
AAAI
Patrick Olivier, Toshiyuki Maeda, Jun'ichi Tsujii
1994 B conf
Automatic Recognition of Verbal Polysemy.
COLING
Fumiyo Fukumoto, Jun'ichi Tsujii
1994 B conf
Breaking Down Rhetorical Relations for the purpose of Analysing Discourse Structures.
COLING
Jun-ichi Fukumoto, Jun'ichi Tsujii
1994 — conf
Combination of Symbolic and Statistical Approaches for Grammatical Knowledge Acquisition.
ANLP
Masaki Kiyono, Jun'ichi Tsujii
1994 B conf
Hypothesis Selection in Grammar Acquisition.
COLING
Masaki Kiyono, Jun'ichi Tsujii
1994 J jnl
Quantitative Perceptual Representation of Prepositional Semantics.
Artif. Intell. Rev.
Patrick Olivier, Jun'ichi Tsujii
1993 A conf
Linguistic Knowledge Acquisition from Parsing Failures.
EACL
Masaki Kiyono, Jun'ichi Tsujii
1992 — conf
Automatic Learning for Semantic Collocation.
ANLP
Satoshi Sekine, Jeremy J. Carroll, Sophia Ananiadou, Jun'ichi Tsujii
1992 B conf
Interaction between Structural Changes in Machine Translation.
COLING
Satoshi Kinoshita, John Phillips, Jun'ichi Tsujii
1992 — conf
Interaction between Structural Changes in Machine Translation.
HLT
Satoshi Kinoshita, John Phillips, Jun'ichi Tsujii
1992 B conf
Linguistic Knowledge Generator.
COLING
Satoshi Sekine, Sophia Ananiadou, Jeremy J. Carroll, Jun'ichi Tsujii
1992 C conf
Visualisation: mediating the interchange of information from the verbal to the visual domain.
ISI
Patrick Olivier, Sophia Ananiadou, Toshiyuki Maeda, Jun'ichi Tsujii
1991 A conf
Lexical Transfer based on bilingual signs: Towards interaction during transfer.
EACL
Jun'ichi Tsujii, Kimikazu Fujita
1990 B conf
Machine Translation without a source text.
COLING
Harold L. Somers, Jun'ichi Tsujii, Danny Jones
1988 B conf
Dialogue translation vs. text translation.
COLING
Jun'ichi Tsujii, Makoto Nagao
1988 J jnl
GRADE: A software environment for machine translation.
Mach. Transl.
Jun-ichi Nakamura, Jun'ichi Tsujii, Makoto Nagao
1988 B conf
How to get preferred readings in natural language analysis.
COLING
Jun'ichi Tsujii, Yukiyoshi Muto, Yuuji Ikeda, Makoto Nagao
1988 B conf
Reasons why I do not care grammar formalism.
COLING
Jun'ichi Tsujii
1986 B conf
Future Directions of Machine Translation.
COLING
Jun'ichi Tsujii
1986 J jnl
Science and technology agency's Mu machine translation project.
Future Gener. Comput. Syst.
Makoto Nagao, Jun'ichi Tsujii, Jun-ichi Nakamura
1986 B conf
Solutions for Problems of MT Parser. Methods used in Mu-Machine Translation Project.
COLING
Jun-ichi Nakamura, Jun'ichi Tsujii, Makoto Nagao
1986 B conf
The Transfer Phase of the Mu Machine Translation System.
COLING
Makoto Nagao, Jun'ichi Tsujii
1985 J jnl
The Japanese Government Project for Machine Translation.
Comput. Linguistics
Makoto Nagao, Jun'ichi Tsujii, Jun-ichi Nakamura
1984 B conf
Analysis Grammar of Japanese in the Mu-Project: A Procedural Approach to Analysis Grammar.
COLING
Jun'ichi Tsujii, Jun-ichi Nakamura, Makoto Nagao
1984 B conf
Dealing With Incompleteness Of Linguistic Knowledge In Language Translation - Transfer And Generation Stage Of MU Machine Translation Project.
COLING
Makoto Nagao, Toyoaki Nishida, Jun'ichi Tsujii
1984 B conf
Grammar Writing System (GRADE) of Mu-Machine Translation Project and its Characteristics.
COLING
Jun-ichi Nakamura, Jun'ichi Tsujii, Makoto Nagao
1982 B conf
An English Japanese Machine Translation System Of The Titles Of Scientific And Engineering Papers.
COLING
Makoto Nagao, Jun'ichi Tsujii, Koji Yada, Toshihiro Kakimoto
1982 B conf
The Transfer Phase In an English-Japanese Translation System.
COLING
Jun'ichi Tsujii
1980 B conf
A Machine Translation System From Japanese Into English - Another Perspective Of MT Systems.
COLING
Makoto Nagao, Jun'ichi Tsujii, Kei Mitamura, Hideki Hirakawa, Masako Kume
1980 B conf
An Attempt To Computerized Dictionary Data Bases.
COLING
Makoto Nagao, Jun'ichi Tsujii, Yoshihiro Ueda, M. Takiyama
1979 A* conf
LISP Machine NK3 and Measurement of Its Performance.
IJCAI
Makoto Nagao, Jun'ichi Tsujii, Katsuto Nakajima, Kei Mitamura, Hachidai Ito
1979 A* conf
S-Net: A Foundation for Knowledge Representation Languages.
IJCAI
Makoto Nagao, Jun'ichi Tsujii
1973 A* conf
Mechanism of Deduction in a Question-Answering System with Natural Language Input.
IJCAI
Makoto Nagao, Jun'ichi Tsujii