Julio Vera

30 papers B 1Journal 25Unranked 4
YearRankTypeTitle / Venue / Authors
2026 J jnl
esloco: simulation-based estimation of local coverage in long-read DNA sequencing.
Bioinform.
Adrian Weich, Christopher Lischer, Julio Vera
2025 — conf
Abstract: Multi-level Cancer Profiling through Joint Cell-graph Representations.
Bildverarbeitung für die Medizin
Luis Carlos Rivera Monroy, Leonhard Rist, Frauke Wilm, Christian Ostalecki, Andreas Baur, Julio Vera, Katharina Breininger, Andreas K. Maier
2025 J jnl
ENQUIRE automatically reconstructs, expands, and drives enrichment analysis of gene and Mesh co-occurrence networks from context-specific biomedical literature.
PLoS Comput. Biol.
Luca Musella, Alejandro Afonso Castro, Xin Lai, Max Widmann, Julio Vera
2025 J jnl
Graph neural networks in multi-stained pathological imaging: extended comparative analysis of Radiomic features.
Int. J. Comput. Assist. Radiol. Surg.
Luis Carlos Rivera Monroy, Leonhard Rist, Christian Ostalecki, Andreas Bauer, Julio Vera, Katharina Breininger, Andreas K. Maier
2024 — conf
Comparative Analysis of Radiomic Features and Gene Expression Profiles in Histopathology Data using Graph Neural Networks.
Bildverarbeitung für die Medizin
Luis Carlos Rivera Monroy, Leonhard Rist, Martin Eberhardt, Christian Ostalecki, Andreas Bauer, Julio Vera, Katharina Breininger, Andreas K. Maier
2023 J jnl
Comparative Analysis of Radiomic Features and Gene Expression Profiles in Histopathology Data Using Graph Neural Networks.
CoRR
Luis Carlos Rivera Monroy, Leonhard Rist, Martin Eberhardt, Christian Ostalecki, Andreas Bauer, Julio Vera, Katharina Breininger, Andreas K. Maier
2023 — conf
Employing Graph Representations for Cell-Level Characterization of Melanoma MELC Samples.
ISBI
Luis Carlos Rivera Monroy, Leonhard Rist, Martin Eberhardt, Christian Ostalecki, Andreas Baur, Julio Vera, Katharina Breininger, Andreas Maier
2022 J jnl
Employing Graph Representations for Cell-level Characterization of Melanoma MELC Samples.
CoRR
Luis Carlos Rivera Monroy, Leonhard Rist, Martin Eberhardt, Christian Ostalecki, Andreas Baur, Julio Vera, Katharina Breininger, Andreas K. Maier
2022 J jnl
Melanoma 2.0. Skin cancer as a paradigm for emerging diagnostic technologies, computational modelling and artificial intelligence.
Briefings Bioinform.
Julio Vera, Xin Lai, Andreas Baur, Michael Erdmann, Shailendra K. Gupta, Cristiano Guttà, Lucie Heinzerling, Markus V. Heppt, Philipp Maximilian Kazmierczak, Manfred Kunz, Christopher Lischer, Brigitte M. Pützer, Markus Rehm, Christian Ostalecki, Jimmy Retzlaff, Stephan Witt, Olaf Wolkenhauer, Carola Berking
2022 B conf
Melanoma Segmentation and Classification Employing Imaging and Graph Encodings.
CHASE
Luis Carlos Rivera Monroy, Martin Eberhardt, Christian Ostalecki, Andreas Baur, Julio Vera, Andreas K. Maier
2020 J jnl
An integrative network-driven pipeline for systematic identification of lncRNA-associated regulatory network motifs in metastatic melanoma.
BMC Bioinform.
Nivedita Singh, Martin Eberhardt, Olaf Wolkenhauer, Julio Vera, Shailendra K. Gupta
2019 J jnl
Community effort endorsing multiscale modelling, multiscale data science and multiscale computing for systems medicine.
Briefings Bioinform.
Massimiliano Zanin, Ivan Chorbev, Blaz Stres, Egils Stalidzans, Julio Vera, Paolo Tieri, Filippo Castiglione, Derek Groen, Huiru Zheng, Jan Baumbach, Johannes A. Schmid, José Basilio, Peter Klimek, Natasa Debeljak, Damjana Rozman, Harald H. H. W. Schmidt
2019 J jnl
Exosomal lncRNAs and cancer: connecting the missing links.
Bioinform.
Hojjat Naderi-Meshkin, Xin Lai, Raheleh Amirkhah, Julio Vera, John E. J. Rasko, Ulf Schmitz
2016 J jnl
Personalized cancer immunotherapy using Systems Medicine approaches.
Briefings Bioinform.
Shailendra K. Gupta, Tanushree Jaitly, Ulf Schmitz, Gerold Schuler, Olaf Wolkenhauer, Julio Vera
2016 J jnl
The RNA world in the 21st century - a systems approach to finding non-coding keys to clinical questions.
Briefings Bioinform.
Ulf Schmitz, Hojjat Naderi-Meshkin, Shailendra K. Gupta, Olaf Wolkenhauer, Julio Vera
2015 — conf
Supervised Cluster Analysis of miRNA Expression Data Using Rough Hypercuboid Partition Matrix.
PReMI
Sushmita Paul, Julio Vera
2011 J jnl
A model-based strategy to investigate the role of
Theory Biosci.
Svetoslav G. Nikolov, Julio Vera, Ulf Schmitz, Olaf Wolkenhauer
2010 J jnl
Integration of sensitivity and bifurcation analysis to detect critical processes in a model combining signalling and cell population dynamics.
Int. J. Syst. Sci.
Svetoslav G. Nikolov, Xin Lai, Ulf W. Liebal, Olaf Wolkenhauer, Julio Vera
2010 J jnl
Non-coding RNA detection methods combined to improve usability, reproducibility and precision.
BMC Bioinform.
Peter Raasch, Ulf Schmitz, Nadja Patenge, Julio Vera, Bernd Kreikemeyer, Olaf Wolkenhauer
2010 J jnl
Optimization of biochemical systems through mathematical programming: Methods and applications.
Comput. Oper. Res.
Julio Vera, Carlos González-Alcón, Alberto Marín-Sanguino, Néstor V. Torres
2009 J jnl
A multi-level model accounting for the effects of JAK2-STAT5 signal modulation in erythropoiesis.
Comput. Biol. Chem.
Xin Lai, Svetoslav G. Nikolov, Olaf Wolkenhauer, Julio Vera
2009 J jnl
Exploration of homodimer receptor: homodimer protein interactions.
Int. J. Bioinform. Res. Appl.
Julio Vera, Taesoo Kwon, Ulf Schmitz, Walter Kolch, Olaf Wolkenhauer
2008 J jnl
A systems biology approach to analyse amplification in the JAK2-STAT5 signalling pathway.
BMC Syst. Biol.
Julio Vera, Julie Bachmann, Andrea C. Pfeifer, Verena Becker, Jose A. Hormiga, Néstor Torres Darias, Jens Timmer, Ursula Klingmüller, Olaf Wolkenhauer
2008 J jnl
Dynamic properties of a delayed protein cross talk model.
Biosyst.
Svetoslav G. Nikolov, Julio Vera, Vladimir Kotev, Olaf Wolkenhauer, Valko Petrov
2008 J jnl
Dynamics of receptor and protein transducer homodimerisation.
BMC Syst. Biol.
Julio Vera, Thomas Millat, Walter Kolch, Olaf Wolkenhauer
2008 J jnl
Multi-objective steady state optimization of biochemical reaction networks using a constrained genetic algorithm.
Comput. Chem. Eng.
Hannes Link, Julio Vera, Dirk Weuster-Botz, Néstor Torres Darias, Ezequiel Franco-Lara
2007 J jnl
Detection of potential enzyme targets by metabolic modelling and optimization: Application to a simple enzymopathy.
Bioinform.
Julio Vera, Raul Curto, Marta Cascante, Néstor V. Torres
2007 J jnl
PLMaddon: a power-law module for the Matlab
Bioinform.
Julio Vera, Cheng Sun, Yvonne Oertel, Olaf Wolkenhauer
2007 J jnl
SBML export interface for the systems biology toolbox for MATLAB.
Bioinform.
Henning Schmidt, Gunnar Drews, Julio Vera, Olaf Wolkenhauer
2003 J jnl
MetMAP: An integrated Matlab TM package for analysis and optimization of metabolic systems.
Silico Biol.
Julio Vera, Néstor V. Torres