Julio C. Facelli

68 papers A 2B 1Misc 14Journal 36Unranked 14
YearRankTypeTitle / Venue / Authors
2025 J jnl
Conceptual framework for prediction models of patient deterioration based on nursing documentation patterns: reproducibility and generalizability with a large number of hospitals across the United States.
J. Biomed. Informatics
Yik-Ki Jacob Wan, Samir E. AbdelRahman, Julio C. Facelli, Karl Madaras-Kelly, Kensaku Kawamoto, Deniz Dishman, S. Trent Rosenbloom, Kenrick Cato, Sarah Collins Rossetti, Guilherme Del Fiol
2024 J jnl
An open science grid implementation of the steady state genetic algorithm for crystal structure prediction.
J. Comput. Sci.
Kristal N. Varela, Gabriel I. Pagola, Albert M. Lund, Marta B. Ferraro, Anita M. Orendt, Julio C. Facelli
2024 J jnl
Recommendations to promote fairness and inclusion in biomedical AI research and clinical use.
J. Biomed. Informatics
Ashley C. Griffin, Karen H. Wang, Tiffany I. Leung, Julio C. Facelli
2023 J jnl
Environmental exposures in machine learning and data mining approaches to diabetes etiology: A scoping review.
Artif. Intell. Medicine
Sejal Mistry, Naomi O. Riches, Ramkiran Gouripeddi, Julio C. Facelli
2023 — conf
Resuming HealthCare Informatics Research after CoViD-19: the HealthCare System Perspective.
ICHI
Carlo Combi, Julio C. Facelli, Peter Haddawy, John H. Holmes, Sabine Koch, Hongfang Liu, Jochen Meyer, Mor Peleg, Giuseppe Pozzi, Gregor Stiglic, Pierangelo Veltri, Christopher C. Yang
2023 J jnl
Sequential data mining of infection patterns as predictors for onset of type 1 diabetes in genetically at-risk individuals.
J. Biomed. Informatics
Sejal Mistry, Ramkiran Gouripeddi, Vandana Raman, Julio C. Facelli
2023 — conf
Structural Homology of Epitope Binding Mimicry in the Onset of Type 1 Diabetes Mellitus.
BIBM
Ryan Gardner, Joshua Wilkins, Sejal Mistry, Ramkiran Gouripeddi, Julio C. Facelli
2023 J jnl
The IHI Rochester Report 2022 on Healthcare Informatics Research: Resuming After the CoViD-19.
J. Heal. Informatics Res.
Carlo Combi, Julio C. Facelli, Peter Haddawy, John H. Holmes, Sabine Koch, Hongfang Liu, Jochen Meyer, Mor Peleg, Giuseppe Pozzi, Gregor Stiglic, Pierangelo Veltri, Christopher C. Yang
2023 — conf
Uncertainty in Breast Cancer Risk Prediction: A Conformal Prediction Study of Race Stratification.
MedInfo
Alexander S. Millar, John Arnn, Sam Himes, Julio C. Facelli
2022 J jnl
Computer clinical decision support that automates personalized clinical care: a challenging but needed healthcare delivery strategy.
J. Am. Medical Informatics Assoc.
Alan H. Morris, Christopher Horvat, Brian Stagg, David W. Grainger, Michael Lanspa, James Orme, Terry P. Clemmer, Lindell K. Weaver, Frank Thomas, Colin K. Grissom, Ellie Hirshberg, Thomas D. East, Carrie Jane Wallace, Michael P. Young, Dean F. Sittig, Mary Suchyta, James E. Pearl, Antinio Pesenti, Michela Bombino, Eduardo Beck, Katherine A. Sward, Charlene R. Weir, Shobha Phansalkar, Gordon R. Bernard, B. Taylor Thompson, Roy Brower, Jonathon D. Truwit, Jay S. Steingrub, R. Duncan Hite, Douglas F. Willson, Jerry J. Zimmerman, Vinay Nadkarni, Adrienne G. Randolph, Martha A. Q. Curley, Christopher J. L. Newth, Jacques Lacroix, Michael S. D. Agus, Kang Hoe Lee, Bennett P. deBoisblanc, Frederick Alan Moore, R. Scott Evans, Dean K. Sorenson, Anthony Wong, Michael V. Boland, Willard H. Dere, Alan S. Crandall, Julio C. Facelli, Stanley M. Huff, Peter J. Haug, Ulrike Pielmeier, Stephen Edward Rees, Dan S. Karbing, Steen Andreassen, Eddy Fan, Roberta M. Goldring, Kenneth I. Berger, Beno W. Oppenheimer, Eugene Wesley Ely, Brian W. Pickering, David A. Schoenfeld, Irena Tocino, Russell S. Gonnering, Peter J. Pronovost, Lucy A. Savitz, Didier Dreyfuss, Arthur S. Slutsky, James D. Crapo, Michael R. Pinsky, Brent James, Donald M. Berwick
2022 J jnl
Conformal Prediction in Clinical Medical Sciences.
J. Heal. Informatics Res.
Janette Vazquez, Julio C. Facelli
2021 J jnl
Enabling a learning healthcare system with automated computer protocols that produce replicable and personalized clinician actions.
J. Am. Medical Informatics Assoc.
Alan H. Morris, Brian Stagg, Michael Lanspa, James Orme, Terry P. Clemmer, Lindell K. Weaver, Frank Thomas, Colin K. Grissom, Ellie Hirshberg, Thomas D. East, Carrie Jane Wallace, Michael P. Young, Dean F. Sittig, Antonio Pesenti, Michela Bombino, Eduardo Beck, Katherine A. Sward, Charlene R. Weir, Shobha S. Phansalkar, Gordon R. Bernard, B. Taylor Thompson, Roy Brower, Jonathon D. Truwit, Jay S. Steingrub, R. Duncan Hite, Douglas F. Willson, Jerry J. Zimmerman, Vinay M. Nadkarni, Adrienne Randolph, Martha A. Q. Curley, Christopher J. L. Newth, Jacques Lacroix, Michael S. D. Agus, Kang H. Lee, Bennett P. deBoisblanc, R. Scott Evans, Dean K. Sorenson, Anthony Wong, Michael V. Boland, David W. Grainger, Willard H. Dere, Alan S. Crandall, Julio C. Facelli, Stanley M. Huff, Peter J. Haug, Ulrike Pielmeier, Stephen Edward Rees, Dan S. Karbing, Steen Andreassen, Eddy Fan, Roberta M. Goldring, Kenneth I. Berger, Beno W. Oppenheimer, Eugene Wesley Ely, Ognjen Gajic, Brian W. Pickering, David A. Schoenfeld, Irena Tocino, Russell S. Gonnering, Peter J. Pronovost, Lucy A. Savitz, Didier Dreyfuss, Arthur S. Slutsky, James D. Crapo, Derek C. Angus, Michael R. Pinsky, Brent James, Donald M. Berwick
2021 J jnl
Human activity pattern implications for modeling SARS-CoV-2 transmission.
Comput. Methods Programs Biomed.
Yulan Wang, Bernard Li, Ramkiran Gouripeddi, Julio C. Facelli
2020 Misc conf
A Harmonized Framework to Evaluate Impacts of ECHO Pain and Opioid Training on Patients and Clinicians.
AMIA
Le-Thuy T. Tran, Ramkiran Gouripeddi, Julio C. Facelli
2020 — conf
Characterization of Analytic and Experimental Uncertainty of RNA-seq Co-expression Network Determination: Application to SCA2.
ICHI
Lance T. Pflieger, Stefan M. Pulst, Julio C. Facelli
2020 — ed.
IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2020, Virtual Event, South Korea, December 16-19, 2020
BIBM
Taesung Park, Young-Rae Cho, Xiaohua Hu, Illhoi Yoo, Hyun Goo Woo, Jianxin Wang, Julio C. Facelli, Seungyoon Nam, Mingon Kang
2020 J jnl
Predicting Optimal Hypertension Treatment Pathways Using Recurrent Neural Networks.
Int. J. Medical Informatics
Xiangyang Ye, Qing T. Zeng, Julio C. Facelli, Diana I. Brixner, Mike Conway, Bruce E. Bray
2019 — conf
An Architecture for Metadata-driven Integration of Heterogeneous Sensor and Health Data for Translational Exposomic Research.
BHI
Ramkiran Gouripeddi, Le-Thuy T. Tran, Randy Madsen, Tanvi Gangadhar, Peter Mo, Nicole Burnett, Ryan Butcher, Katherine A. Sward, Julio C. Facelli
2019 — conf
An Architecture to Support Real-World Studies that Investigate the Autonomic Nervous System.
Poly/DMAH@VLDB
Danielle Groat, Ramkiran Gouripeddi, Randy Madsen, Yu Kuei Lin, Julio C. Facelli
2019 Misc conf
Assimilating Pollen into Exposomes for Pediatric Asthma Research.
AMIA
Ramkiran Gouripeddi, Le-Thuy T. Tran, Tanvi Gangadhar, Randy K. Madsen, Julio C. Facelli, Katherine A. Sward
2019 — conf
Concept Bag: A New Method for Computing Concept Similarity in Biomedical Data.
IWBBIO (2)
Richard L. Bradshaw, Ramkiran Gouripeddi, Julio C. Facelli
2019 J jnl
Generation and Classification of Activity Sequences for Spatiotemporal Modeling of Human Populations.
CoRR
Albert M. Lund, Ramkiran Gouripeddi, Julio C. Facelli
2019 J jnl
Towards a content agnostic computable knowledge repository for data quality assessment.
Comput. Methods Programs Biomed.
Naresh Sundar Rajan, Ramkiran Gouripeddi, Peter Mo, Randy Madsen, Julio C. Facelli
2018 J jnl
Calcium interactions with Cx26 hemmichannel: Spatial association between MD simulations biding sites and variant pathogenicity.
Comput. Biol. Chem.
Juan M. R. Albano, Nahuel Mussini, Roxana Toriano, Julio C. Facelli, Marta B. Ferraro, Mónica Pickholz
2018 J jnl
Comprehensive methodology to monitor longitudinal change patterns during EHR implementations: a case study at a large health care delivery network.
J. Biomed. Informatics
Tiago K. Colicchio, Guilherme Del Fiol, Debra L. Scammon, Julio C. Facelli, Watson A. Bowes III, Scott P. Narus
2017 Misc conf
A Conceptual Representation of Exposome in Translational Research.
AMIA
Ramkiran Gouripeddi, Nicole Burnett, Mollie R. Cummins, Julio C. Facelli, Katherine A. Sward
2017 J jnl
Development and classification of a robust inventory of near real-time outcome measurements for assessing information technology interventions in health care.
J. Biomed. Informatics
Tiago K. Colicchio, Guilherme Del Fiol, Debra L. Scammon, Watson A. Bowes III, Julio C. Facelli, Scott P. Narus
2017 Misc conf
Extraction of Patient Temporal Patterns and Clusters from Clinical Data.
AMIA
Samir E. AbdelRahman, Julio C. Facelli, Bruce E. Bray, Rashmee U. Shah, Guilherme Del Fiol
2017 J jnl
Solving Interoperability in Translational Health.
Appl. Clin. Inform.
Anne M. Turner, Julio C. Facelli, Monique W. M. Jaspers, Thomas Wetter, Daniel Pfeifer, Laël Cranmer Gatewood, Terry Adam, Yu-Chuan Li, Ming-Chin Lin, R. Scott Evans, Anna L. Beukenhorst, Hugo Johan Theodoore van Mens, Esmée Tensen, Christian Bock, Laura Fendrich, Peter Seitz, Julian Suleder, Ranyah Aldekhyyel, Kent Bridgeman, Zhen Hu, Aaron Sattler, Shin-Yi Guo, Md. Mohaimenul Islam, Dina Nur Anggraini Ningrum, Hsin-Ru Tung, Jiantao Bian, Joseph M. Plasek, Casey A. Rommel, Juandalyn Burke, Harkirat Sohi
2017 Misc conf
The Impact of Health IT Adoption: Are We Measuring the Right Outcomes?
AMIA
Tiago K. Colicchio, Guilherme Del Fiol, Watson A. Bowes III, Julio C. Facelli, Debra L. Scammon, Scott P. Narus
2016 J jnl
A review of the applications of data mining and machine learning for the prediction of biomedical properties of nanoparticles.
Comput. Methods Programs Biomed.
David E. Jones, Hamidreza Ghandehari, Julio C. Facelli
2016 Misc conf
Assessment of the Heterogeneity of Outcome Measurements for IT Interventions in Health Care.
AMIA
Tiago K. Colicchio, Julio C. Facelli, Guilherme Del Fiol, Debra L. Scammon, Watson A. Bowes III, Scott P. Narus
2016 J jnl
Health information technology adoption: Understanding research protocols and outcome measurements for IT interventions in health care.
J. Biomed. Informatics
Tiago K. Colicchio, Julio C. Facelli, Guilherme Del Fiol, Debra L. Scammon, Watson A. Bowes III, Scott P. Narus
2014 J jnl
A domain analysis model for eIRB systems: Addressing the weak link in clinical research informatics.
J. Biomed. Informatics
Shan He, Scott P. Narus, Julio C. Facelli, Lee Min Lau, Jeffrey R. Botkin, John F. Hurdle
2014 J jnl
Data model, dictionaries, and desiderata for biomolecular simulation data indexing and sharing.
J. Cheminformatics
Julien C. Thibault, Daniel R. Roe, Julio C. Facelli, Thomas E. Cheatham III
2014 J jnl
Development of a HIPAA-compliant environment for translational research data and analytics.
J. Am. Medical Informatics Assoc.
Wayne B. Bradford, John F. Hurdle, Bernie LaSalle, Julio C. Facelli
2014 Misc conf
Federating Air Quality Data with Clinical Data.
AMIA
Ramkiran Gouripeddi, Naresh Sundar Rajan, Randy Madsen, Phillip B. Warner, Julio C. Facelli
2014 J jnl
Structure prediction of polyglutamine disease proteins: comparison of methods.
BMC Bioinform.
Jingran Wen, Daniel R. Scoles, Julio C. Facelli
2014 — conf
VIRGO: Virtual Identity Resolution on the Go.
ICHI
Phillip B. Warner, Peter Mo, N. Dustin Schultz, Ramkiran Gouripeddi, Jeffrey Duncan, Julio C. Facelli
2014 J jnl
iBIOMES Lite: Summarizing Biomolecular Simulation Data in Limited Settings.
J. Chem. Inf. Model.
Julien C. Thibault, Thomas E. Cheatham III, Julio C. Facelli
2013 — conf
A Service Oriented Framework to Assess the Quality of Electronic Health Data for Clinical Research.
ICHI
Naresh Sundar Rajan, Ramkiran Gouripeddi, Julio C. Facelli
2013 Misc conf
Creating a Secure, Easily Accessible Environment for PHI Data Exports within FURTHeR utilizing REDCap.
AMIA
Dustin Schultz, Bernie LaSalle, Shan He, Ramkiran Gouripeddi, Ryan Butcher, Julio C. Facelli
2013 Misc conf
FURTHeR: An Infrastructure for Clinical, Translational and Comparative Effectiveness Research.
AMIA
Ramkiran Gouripeddi, Julio C. Facelli, Richard L. Bradshaw, Dustin Schultz, Bernie LaSalle, Phillip B. Warner, Ryan Butcher, Randy Madsen, Peter Mo
2013 Misc conf
Federating caTissue with FURTHeR.
AMIA
Peter Mo, Randy Madsen, Richard L. Bradshaw, N. Dustin Schultz, Ryan Butcher, Bernie LaSalle, Ramkiran Gouripeddi, Julio C. Facelli
2013 Misc conf
Going FURTHeR with Three Federated Query Types.
AMIA
Richard L. Bradshaw, N. Dustin Schultz, Julio C. Facelli, Randy Madsen, Ramkiran Gouripeddi, Ryan Butcher, Bernie LaSalle
2013 B conf
Implementing public health analytical services: Grid enabling of MetaMap.
CBMS
Kailah Davis, Ronald C. Price, Julio C. Facelli
2013 — conf
International Collaborations in Health Informatics Education: Globalizing Health and Biomedical Informatics Curricula.
MedInfo
Monique W. M. Jaspers, George Demiris, Julio C. Facelli, Lael C. Gatewood, Alexander Hörbst, J. Li, Daniel Pfeifer, Thomas Wetter
2013 Misc conf
Knowledge Driven Inclusion and Exclusion Criteria Refinement within the FURTHeR Framework.
AMIA
Randy Madsen, Richard L. Bradshaw, N. Dustin Schultz, Ryan Butcher, Ramkiran Gouripeddi, Joyce A. Mitchell, Julio C. Facelli
2013 Misc conf
On the Fly Linkage of Records Containing Protected Health Information (PHI) Within the FURTHeR Framework.
AMIA
Phillip B. Warner, Peter Mo, N. Dustin Schultz, Ramkiran Gouripeddi, Scott P. Narus, Julio C. Facelli
2013 Misc conf
Using Primitive Role Relationships in SNOMED to Enhance Concept Searching by Limiting Semantic Variability in FURTHeR.
AMIA
Ryan Butcher, Ramkiran Gouripeddi, Randy Madsen, Julio C. Facelli
2013 J jnl
iBIOMES: Managing and Sharing Biomolecular Simulation Data in a Distributed Environment.
J. Chem. Inf. Model.
Julien C. Thibault, Julio C. Facelli, Thomas E. Cheatham III
2012 J jnl
An agenda for ultra-large-scale system research for global health informatics.
SIGHIT Rec.
Julio C. Facelli
2012 — conf
Federated Queries for Comparative Effectiveness Research: Performance Analysis.
HealthGrid
Ronald C. Price, Derick Huth, Jody Smith, Steve Harper, Wilson Pace, Gerald Pulver, Michael G. Kahn, Lisa M. Schilling, Julio C. Facelli
2012 J jnl
Identification of pneumonia and influenza deaths using the death certificate pipeline.
BMC Medical Informatics Decis. Mak.
Kailah Davis, Catherine J. Staes, Jeffrey Duncan, Sean Igo, Julio C. Facelli
2012 J jnl
Nanoinformatics: developing new computing applications for nanomedicine.
Computing
Victor Maojo, Martin Fritts, Fernando Martín-Sánchez, Diana de la Iglesia, Raul E. Cachau, Miguel García-Remesal, José Crespo, Joyce A. Mitchell, Alberto Anguita, Nathan A. Baker, José María Barreiro, Sonia E. Benitez, Guillermo de la Calle, Julio C. Facelli, Peter Ghazal, Antoine Geissbühler, Fernando D. González Nilo, Norbert M. Graf, Pierre Grangeat, Isabel Hermosilla, Rada Hussein, Josipa Kern, Sabine Koch, Yannick Legré, Victoria López-Alonso, Guillermo López-Campos, Luciano Milanesi, Vassilis Moustakis, Cristian R. Munteanu, Paula Otero, Alejandro Pazos, David Pérez-Rey, George Potamias, Ferran Sanz, Casimir A. Kulikowski
2012 J jnl
Utility of gene-specific algorithms for predicting pathogenicity of uncertain gene variants.
J. Am. Medical Informatics Assoc.
David K. Crockett, Elaine Lyon, Marc S. Williams, Scott P. Narus, Julio C. Facelli, Joyce A. Mitchell
2011 J jnl
Characterization of uncertainty in the classification of multivariate assays: application to PAM50 centroid-based genomic predictors for breast cancer treatment plans.
J. Clin. Bioinform.
Mark T. W. Ebbert, Roy R. L. Bastien, Kenneth M. Boucher, Miguel Martín, Eva Carrasco, Rosalía Caballero, Inge J. Stijleman, Philip S. Bernard, Julio C. Facelli
2010 J jnl
Predicting the start week of respiratory syncytial virus outbreaks using real time weather variables.
BMC Medical Informatics Decis. Mak.
Nephi A. Walton, Mollie R. Poynton, Per H. Gesteland, Christopher G. Maloney, Catherine J. Staes, Julio C. Facelli
2009 J jnl
A case for using grid architecture for state public health informatics: the Utah perspective.
BMC Medical Informatics Decis. Mak.
Catherine J. Staes, Wu Xu, Samuel D. LeFevre, Ronald C. Price, Scott P. Narus, Adi V. Gundlapalli, Robert T. Rolfs, Barry Nangle, Matthew H. Samore, Julio C. Facelli
2009 J jnl
Crystal structure prediction of flexible molecules using parallel genetic algorithms with a standard force field.
J. Comput. Chem.
Seonah Kim, Anita M. Orendt, Marta B. Ferraro, Julio C. Facelli
2009 — conf
Parallel Genetic Algorithms for Crystal Structure Prediction: Successes and Failures in Predicting Bicalutamide Polymorphs.
ICIC (1)
Marta B. Ferraro, Anita M. Orendt, Julio C. Facelli
2008 J jnl
A parallel genetic algorithm to discover patterns in genetic markers that indicate predisposition to multifactorial disease.
Comput. Biol. Medicine
Tobias Rausch, Alun Thomas, Nicola J. Camp, Lisa A. Cannon-Albright, Julio C. Facelli
2008 — conf
Digital Sherpa: a set of high level tools to manage scientific applications in a computational grid.
Mardi Gras Conference
Ronald C. Price, Wayne B. Bradford, Victor E. Bazterra, Julio C. Facelli
2006 J jnl
Computational Science and Engineering Online (CSE-Online): A Cyber-Infrastructure for Scientific Computing.
J. Chem. Inf. Model.
Thanh N. Truong, Manohar Nayak, Hung H. Huynh, Tom Cook, Priya Mahajan, Le-Thuy T. Tran, Jannu Bharath, Shrish Jain, Ha B. Pham, Chaiwoot Boonyasiriwat, Nhat Nguyen, Evan Andersen, Yong Kim, Suengkeol Choe, Jihoon Choi, Thomas E. Cheatham III, Julio C. Facelli
2006 A conf
Poster reception - Digital Sherpa.
SC
Ronald C. Price, Victor E. Bazterra, Wayne B. Bradford, Julio C. Facelli
2005 J jnl
A general framework to understand parallel performance in heterogeneous clusters: analysis of a new adaptive parallel genetic algorithm.
J. Parallel Distributed Comput.
Victor E. Bazterra, Martin Cuma, Marta B. Ferraro, Julio C. Facelli
2001 — conf
Improving Cluster Utilization through Set Based Allocation Policies.
ICPP Workshops
David B. Jackson, Brian D. Haymore, Julio C. Facelli, Quinn Snell
1992 A conf
How Changing High Performance Computing Technology Changes the Way in Whigh We Do Computational Chemistry.
SC
Julio C. Facelli, Jeff Nichols