Julien Knafou

18 papers Misc 1Journal 6Unranked 11
YearRankTypeTitle / Venue / Authors
2025 — conf
TransBERT: A Framework for Synthetic Translation in Domain-Specific Language Modeling.
EMNLP (Findings)
Julien Knafou, Luc Mottin, Anaïs Mottaz, Alexandre Flament, Patrick Ruch
2024 — conf
SIB Text-Mining at TREC PLABA 2024.
TREC
Luc Mottin, Anaïs Mottaz, Julien Knafou, Alexandre Flament, Julien Gobeill, Patrick Ruch
2023 J jnl
Deep learning-based risk prediction for interventional clinical trials based on protocol design: A retrospective study.
Patterns
Sohrab Ferdowsi, Julien Knafou, Nikolay Borissov, David Vicente Alvarez, Rahul Mishra, Poorya Amini, Douglas Teodoro
2023 J jnl
Multilingual RECIST classification of radiology reports using supervised learning.
Frontiers Digit. Health
Luc Mottin, Jean-Philippe Goldman, Christoph Jäggli, Rita Achermann, Julien Gobeill, Julien Knafou, Julien Ehrsam, Alexandre Wicky, Camille L. Gerard, Tanja Schwenk, Mélinda Charrier, Petros Tsantoulis, Christian Lovis, Alexander B. Leichtle, Michael Kiessling, Olivier Michielin, Sylvain Pradervand, Vasiliki Foufi, Patrick Ruch
2022 Misc conf
Classification of oncology treatment responses from radiology reports with supervised machine learning.
AMIA
Luc Mottin, Jean-Philippe Goldman, Christoph Jäggli, Rita Achermann, Julien Gobeill, Julien Knafou, Julien Ehrsam, Alexandre Wicky, Camille L. Gerard, Tanja Schwenk, Mélinda Charrier, Petros Tsantoulis, Christian Lovis, Alexander B. Leichtle, Michael Kiessling, Olivier Michielin, Sylvain Pradervand, Vasiliki Foufi, Patrick Ruch
2021 — conf
Classification of hierarchical text using geometric deep learning: the case of clinical trials corpus.
EMNLP (1)
Sohrab Ferdowsi, Nikolay Borissov, Julien Knafou, Poorya Amini, Douglas Teodoro
2021 J jnl
Classification of hierarchical text using geometric deep learning: the case of clinical trials corpus.
CoRR
Sohrab Ferdowsi, Nikolay Borissov, Julien Knafou, Poorya Amini, Douglas Teodoro
2021 J jnl
Ensemble of Deep Masked Language Models for Effective Named Entity Recognition in Health and Life Science Corpora.
Frontiers Res. Metrics Anal.
Nona Naderi, Julien Knafou, Jenny Copara, Patrick Ruch, Douglas Teodoro
2020 — conf
An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents.
CLEF (Working Notes)
Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Jingqi Wang, Yuankai Ren, Zhi Zhang, Yaoyun Zhang, Mai Hoang Dao, Pedro Ruas, Andre Lamurias, Francisco M. Couto, Jenny Copara, Nona Naderi, Julien Knafou, Patrick Ruch, Douglas Teodoro, Daniel M. Lowe, John Mayfield, Abdullatif Köksal, Hilal Dönmez, Elif Özkirimli, Arzucan Özgür, Darshini Mahendran, Gabrielle Gurdin, Nastassja Lewinski, Christina Tang, Bridget T. McInnes, C. S. Malarkodi, Pattabhi R. K. Rao, Sobha Lalitha Devi, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor
2020 — conf
BiTeM at WNUT 2020 Shared Task-1: Named Entity Recognition over Wet Lab Protocols using an Ensemble of Contextual Language Models.
W-NUT@EMNLP
Julien Knafou, Nona Naderi, Jenny Copara, Douglas Teodoro, Patrick Ruch
2020 — conf
BioBERTpt - A Portuguese Neural Language Model for Clinical Named Entity Recognition.
ClinicalNLP@EMNLP
Elisa Terumi Rubel Schneider, João Vitor Andrioli de Souza, Julien Knafou, Lucas Emanuel Silva e Oliveira, Jenny Copara, Yohan Bonescki Gumiel, Lucas Ferro Antunes de Oliveira, Emerson Cabrera Paraiso, Douglas Teodoro, Claudia Maria Cabral Moro Barra
2020 — conf
Contextualized French Language Models for Biomedical Named Entity Recognition.
JEP-TALN-RECITAL (DEFT)
Jenny Copara, Julien Knafou, Nona Naderi, Claudia Moro, Patrick Ruch, Douglas Teodoro
2020 — conf
Named Entity Recognition in Chemical Patents using Ensemble of Contextual Language Models.
CLEF (Working Notes)
Jenny Copara, Nona Naderi, Julien Knafou, Patrick Ruch, Douglas Teodoro
2020 J jnl
Named entity recognition in chemical patents using ensemble of contextual language models.
CoRR
Jenny Copara, Nona Naderi, Julien Knafou, Patrick Ruch, Douglas Teodoro
2020 — conf
SIB Text Mining at TREC 2020 Deep Learning Track.
TREC
Julien Knafou, Matthew Jeffryes, Sohrab Ferdowsi, Patrick Ruch
2020 J jnl
UPCLASS: a deep learning-based classifier for UniProtKB entry publications.
Database J. Biol. Databases Curation
Douglas Teodoro, Julien Knafou, Nona Naderi, Emilie Pasche, Julien Gobeill, Cecilia N. Arighi, Patrick Ruch
2019 — conf
A Data-Driven Approach for Measuring the Severity of the Signs of Depression using Reddit Posts.
CLEF (Working Notes)
Paul Van Rijen, Douglas Teodoro, Nona Naderi, Luc Mottin, Julien Knafou, Matt Jeffryes, Patrick Ruch
2019 — conf
SIB Text Mining at TREC 2019 Deep Learning Track: Working Note.
TREC
Julien Knafou, Matt Jeffryes, Luc Mottin, Douglas Teodoro, Patrick Ruch