Julie C. Mitchell

23 papers A 1B 1C 1Journal 20
YearRankTypeTitle / Venue / Authors
2022 J jnl
Identification of Small-Molecule Inhibitors of Fibroblast Growth Factor 23 Signaling via In Silico Hot Spot Prediction and Molecular Docking to α-Klotho.
J. Chem. Inf. Model.
Shih-Hsien Liu, Zhousheng Xiao, Sambit K. Mishra, Julie C. Mitchell, Jeremy C. Smith, L. Darryl Quarles, Loukas Petridis
2022 J jnl
OpenMDlr: parallel, open-source tools for general protein structure modeling and refinement from pairwise distances.
Bioinform.
Russell B. Davidson, Jess Woods, T. Chad Effler, Mathialakan Thavappiragasam, Julie C. Mitchell, Jerry M. Parks, Ada Sedova
2020 J jnl
Supercomputer-Based Ensemble Docking Drug Discovery Pipeline with Application to Covid-19.
J. Chem. Inf. Model.
Atanu Acharya, Rupesh Agarwal, Matthew B. Baker, Jérôme Baudry, Debsindhu Bhowmik, Swen Böhm, Kendall G. Byler, Sam Yen-Chi Chen, Leighton Coates, Connor J. Cooper, Omar Demerdash, Isabella Daidone, John D. Eblen, Sally R. Ellingson, Stefano Forli, Jens Glaser, James C. Gumbart, John Gunnels, Oscar R. Hernandez, Stephan Irle, Daniel W. Kneller, Andrey Kovalevsky, Jeffrey M. Larkin, Travis J. Lawrence, Scott LeGrand, Shih-Hsien Liu, Julie C. Mitchell, Gilchan Park, Jerry M. Parks, Anna Pavlova, Loukas Petridis, Duncan Poole, Line Pouchard, Arvind Ramanathan, David M. Rogers, Diogo Santos-Martins, Aaron Scheinberg, Ada Sedova, Yue Shen, Jeremy C. Smith, Micholas Dean Smith, Carlos Soto, Aristides Tsaris, Mathialakan Thavappiragasam, Andreas F. Tillack, Josh Vincent Vermaas, Van Quan Vuong, Junqi Yin, Shinjae Yoo, Mai Zahran, Laura Zanetti Polzi
2020 J jnl
iPNHOT: a knowledge-based approach for identifying protein-nucleic acid interaction hot spots.
BMC Bioinform.
Xiaolei Zhu, Ling Liu, Jingjing He, Ting Fang, Yi Xiong, Julie C. Mitchell
2019 J jnl
Predicting kinase inhibitors using bioactivity matrix derived informer sets.
PLoS Comput. Biol.
Huikun Zhang, Spencer S. Ericksen, Ching-pei Lee, Gene E. Ananiev, Nathan Wlodarchak, Peng Yu, Julie C. Mitchell, Anthony Gitter, Stephen J. Wright, F. Michael Hoffmann, Scott A. Wildman, Michael A. Newton
2018 J jnl
dbAMEPNI: a database of alanine mutagenic effects for protein-nucleic acid interactions.
Database J. Biol. Databases Curation
Ling Liu, Yi Xiong, Hongyun Gao, Dong-Qing Wei, Julie C. Mitchell, Xiaolei Zhu
2016 J jnl
DBSI server: DNA binding site identifier.
Bioinform.
Shravan Sukumar, Xiaolei Zhu, Spencer S. Ericksen, Julie C. Mitchell
2011 J jnl
Optimizing ethanol production selectivity.
Math. Comput. Model.
Raman Lall, Timothy J. Donohue, Simeone Marino, Julie C. Mitchell
2010 J jnl
Generating Uniform Incremental Grids on
Int. J. Robotics Res.
Anna Yershova, Swati Jain, Steven M. LaValle, Julie C. Mitchell
2010 J jnl
chipD: a web tool to design oligonucleotide probes for high-density tiling arrays.
Nucleic Acids Res.
Yann S. Dufour, Gary E. Wesenberg, Andrew J. Tritt, Jeremy D. Glasner, Nicole T. Perna, Julie C. Mitchell, Timothy J. Donohue
2009 J jnl
CUSA and CUDE: GPU-Accelerated Methods for Estimating Solvent Accessible Surface Area and Desolvation.
J. Comput. Biol.
David Dynerman, Erick Butzlaff, Julie C. Mitchell
2009 J jnl
Structure-Based Predictive Models for Allosteric Hot Spots.
PLoS Comput. Biol.
Omar N. A. Demerdash, Michael D. Daily, Julie C. Mitchell
2008 C conf
Generating Uniform Incremental Grids on
WAFR
Anna Yershova, Steven M. LaValle, Julie C. Mitchell
2008 J jnl
KFC Server: interactive forecasting of protein interaction hot spots.
Nucleic Acids Res.
Steven J. Darnell, Laura H. LeGault, Julie C. Mitchell
2008 J jnl
Optimal design of thermally stable proteins.
Bioinform.
Ryan M. Bannen, Vanitha Suresh, George N. Phillips Jr., Stephen J. Wright, Julie C. Mitchell
2008 J jnl
Sampling Rotation Groups by Successive Orthogonal Images.
SIAM J. Sci. Comput.
Julie C. Mitchell
2007 J jnl
Global optimization in protein docking using clustering, underestimation and semidefinite programming.
Optim. Methods Softw.
Roummel F. Marcia, Julie C. Mitchell, Stephen J. Wright
2007 J jnl
Metal reduction kinetics in
Bioinform.
Raman Lall, Julie C. Mitchell
2007 J jnl
Multi-funnel optimization using Gaussian underestimation.
J. Glob. Optim.
Roummel F. Marcia, Julie C. Mitchell, J. Ben Rosen
2005 J jnl
Iterative Convex Quadratic Approximation for Global Optimization in Protein Docking.
Comput. Optim. Appl.
Roummel F. Marcia, Julie C. Mitchell, J. Ben Rosen
2000 A ed.
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, August 19-23, 2000, La Jolla / San Diego, CA, USA
ISMB
Philip E. Bourne, Michael Gribskov, Russ B. Altman, Nancy Jensen, Debra A. Hope, Thomas Lengauer, Julie C. Mitchell, Eric D. Scheeff, Chris Smith, Shawn Strande, Helge Weissig
1999 B conf
Coupled optimization in protein docking.
RECOMB
Julie C. Mitchell, J. Ben Rosen, Andrew T. Phillips, Lynn F. Ten Eyck
1996 J jnl
Determination of receptor-bound drug conformations by QSAR using flexible fitting to derive a molecular similarity index.
J. Comput. Aided Mol. Des.
Carlos Alberto Montanari, M. S. Tute, A. E. Beezer, Julie C. Mitchell