Juliane Fluck

56 papers A 1B 1C 1Misc 2Journal 26Unranked 23
YearRankTypeTitle / Venue / Authors
2024 J jnl
Dataset of miRNA-disease relations extracted from textual data using transformer-based neural networks.
Database J. Biol. Databases Curation
Sumit Madan, Lisa Kühnel, Holger Fröhlich, Martin Hofmann-Apitius, Juliane Fluck
2024 J jnl
Making Epidemiological and Clinical Studies FAIR Using the Example of COVID-19.
Datenbank-Spektrum
Iris Pigeot, Wolfgang Ahrens, Johannes Darms, Juliane Fluck, Martin Golebiewski, Horst K. Hahn, Xiaoming Hu, Timm Intemann, Elisa Kasbohm, Toralf Kirsten, Sebastian Klammt, Sophie Anne Ines Klopfenstein, Bianca Lassen-Schmidt, Manuela Peters, Ulrich Sax, Dagmar Waltemath, Carsten Oliver Schmidt
2024 — conf
NFDI4Health Workflow and Service for Synthetic Data Generation, Assessment and Risk Management.
GMDS
Sobhan Moazemi, Tim Adams, Hwei Geok Ng, Lisa Kühnel, Julian Schneider, Anatol-Fiete Näher, Juliane Fluck, Holger Fröhlich
2024 J jnl
NFDI4Health workflow and service for synthetic data generation, assessment and risk management.
CoRR
Sobhan Moazemi, Tim Adams, Hwei Geok Ng, Lisa Kühnel, Julian Schneider, Anatol-Fiete Näher, Juliane Fluck, Holger Fröhlich
2024 — conf
Privacy Risk Assessment for Synthetic Longitudinal Health Data.
GMDS
Julian Schneider, Marvin Walter, Karen Otte, Thierry Meurers, Ines Perrar, Ute Nöthlings, Tim Adams, Holger Fröhlich, Fabian Prasser, Juliane Fluck, Lisa Kühnel
2024 — conf
The German Central Health Study Hub - A Service to Find and Publish Clinical, Public Health and Epidemiolocal Studies and Associated Documents.
GMDS
Johannes Darms, Vera Clemens, Marisabel Gonzalez-Ocanto, Claudia Brünings-Kuppe, Selim Cici, Juliane Fluck
2023 — conf
A Semantic Representation of the NFDI4Health Metadata Schema Utilizing the CEDAR Workbench.
SWAT4HCLS
Matthias Löbe, Aliaksandra Shutsko, Carsten Oliver Schmidt, Johannes Darms, Sophie Anne Ines Klopfenstein, Carina Nina Vorisek, Xiaoming Hu, Martin Golebiewski, Juliane Fluck
2023 — conf
An Annotation Workbench for Semantic Annotation of Data Collection Instruments.
MIE
Julia Sasse, Juliane Fluck
2023 — conf
Base4NFDI - Basic Services for NFDI Creating NFDI-Wide Basic Services in a World of Specific Domains.
CoRDI
Sonja Schimmler, Reinhard Altenhöner, Lars Bernard, Juliane Fluck, Axel Klinger, Sören Lorenz, Brigitte Mathiak, Bernhard Miller, Raphael Ritz, Thomas Schörner-Sadenius, Alexander Sczyrba, Regine Stein
2023 — conf
Data Publication for Personalised Health Data A New Publication Standard Introduced by NFDI4Health.
CoRDI
Juliane Fluck, Martin Golebiewski, Johannes Darms
2023 J jnl
FAIRagro: Ein Konsortium in der Nationalen Forschungsdateninfrastruktur (NFDI) für Forschungsdaten in der Agrosystemforschung.
Inform. Spektrum
Xenia Specka, Daniel Martini, Claus Weiland, Daniel Arend, Senthold Asseng, Franziska Boehm, Til Feike, Juliane Fluck, David Gackstetter, Aida Gonzales-Mellado, Thomas Hartmann, Jan-Henrik Haunert, Florian Hoedt, Carsten Hoffmann, Patrick König, Matthias Lange, Stephan Lesch, Birte Lindstädt, Gunnar Lischeid, Markus Möller, Uwe Rascher, Jochen Christoph Reif, Markus Schmalzl, Matthias Senft, Ulrike Stahl, Nikolai Svoboda, Björn Usadel, Heidi Webber, Frank Ewert
2023 — conf
Schema.org as a Lightweight Harmonization Approach for NFDI.
CoRDI
Leyla Jael Castro, Juliane Fluck, Daniel Arend, Matthias Lange, Daniel Martini, Steffen Neumann, Sonja Schimmler, Dietrich Rebholz-Schuhmann
2023 J jnl
Synthetic data generation for a longitudinal cohort study - Evaluation, method extension and reproduction of published data analysis results.
CoRR
Lisa Kühnel, Julian Schneider, Ines Perrar, Tim Adams, Fabian Prasser, Ute Nöthlings, Holger Fröhlich, Juliane Fluck
2023 — conf
The NFDI4Health - Task Force COVID-19.
CoRDI
Iris Pigeot, Juliane Fluck, Johannes Darms, Carsten Oliver Schmidt
2022 J jnl
BERT WEAVER: Using WEight AVERaging to Enable Lifelong Learning for Transformer-based Models.
CoRR
Lisa Langnickel, Alexander Schulz, Barbara Hammer, Juliane Fluck
2022 J jnl
Continuous development of the semantic search engine
Database J. Biol. Databases Curation
Lisa Langnickel, Johannes Darms, Katharina Heldt, Denise Ducks, Juliane Fluck
2022 J jnl
Deep Learning-based detection of psychiatric attributes from German mental health records.
Int. J. Medical Informatics
Sumit Madan, Fabian Julius Zimmer, Helena Balabin, Sebastian Schaaf, Holger Fröhlich, Juliane Fluck, Irene Neuner, Klaus Mathiak, Martin Hofmann-Apitius, Pegah Sarkheil
2022 J jnl
Integrative data semantics through a model-enabled data stewardship.
Bioinform.
Philipp Wegner, Sebastian Schaaf, Mischa Uebachs, Daniel Domingo-Fernández, Yasamin Salimi, Stephan Gebel, Astghik Sargsyan, Colin Birkenbihl, Stephan Springstubbe, Thomas Klockgether, Juliane Fluck, Martin Hofmann-Apitius, Alpha Tom Kodamullil
2022 J jnl
We are not ready yet: limitations of state-of-the-art disease named entity recognizers.
J. Biomed. Semant.
Lisa Kühnel, Juliane Fluck
2021 — conf
COVID-19 preVIEW: Semantic Search to Explore COVID-19 Research Preprints.
MIE
Lisa Langnickel, Roman Baum, Johannes Darms, Sumit Madan, Juliane Fluck
2021 — conf
Facilitating Study and Item Level Browsing for Clinical and Epidemiological COVID-19 Studies.
MIE
Carsten Oliver Schmidt, Johannes Darms, Aliaksandra Shutsko, Matthias Löbe, Rajini Nagrani, Bastian Seifert, Birte Lindstädt, Martin Golebiewski, Sofiya Koleva, Theresa Bender, Christian Robert Bauer, Ulrich Sax, Xiaoming Hu, Michael Lieser, Vivien Junker, Sophie Klopfenstein, Atinkut Zeleke, Dagmar Waltemath, Iris Pigeot, Juliane Fluck
2021 — conf
Improving the FAIRness of Health Studies in Germany: The German Central Health Study Hub COVID-19.
EFMI-STC
Johannes Darms, Jörg Henke, Xiaoming Hu, Carsten Oliver Schmidt, Martin Golebiewski, Juliane Fluck
2020 J jnl
SEAweb: the small RNA Expression Atlas web application.
Nucleic Acids Res.
Raza-Ur Rahman, Anna-Maria Liebhoff, Vikas Bansal, Maksims Fiosins, Ashish Rajput, Abdul Sattar, Daniel Sumner Magruder, Sumit Madan, Ting Sun, Abhivyakti Gautam, Sven Heins, Timur Liwinski, Jörn Bethune, Claudia Trenkwalder, Juliane Fluck, Brit Mollenhauer, Stefan Bonn
2019 Misc conf
Text Mining and Machine Learning for Precision Medicine.
PSB
Graciela Gonzalez, Zhiyong Lu, Robert Leaman, Davy Weissenbacher, Mary Regina Boland, Yong Chen, Jingcheng Du, Juliane Fluck, Casey S. Greene, John H. Holmes, Aditya Kashyap, Rikke Linnemann Nielsen, Zhengqing Ouyang, Sebastian Schaaf, Jaclyn N. Taroni, Cui Tao, Yuping Zhang, Hongfang Liu
2019 J jnl
The extraction of complex relationships and their conversion to biological expression language (BEL) overview of the BioCreative VI (2017) BEL track.
Database J. Biol. Databases Curation
Sumit Madan, Justyna Szostak, Ravikumar Komandur Elayavilli, Richard Tzong-Han Tsai, Mehdi Ali, Longhua Qian, Majid Rastegar-Mojarad, Julia Hoeng, Juliane Fluck
2018 — conf
A semantic data integration methodology for translational neurodegenerative disease research.
SWAT4LS
Sumit Madan, Maksims Fiosins, Stefan Bonn, Juliane Fluck
2017 C conf
Document Clustering using a Graph Covering with Pseudostable Sets.
FedCSIS
Jens Dörpinghaus, Sebastian Schaaf, Juliane Fluck, Marc Jacobs
2017 — ch.
The cloud4health Project: Secondary Use of Clinical Data with Secure Cloud-Based Text Mining Services.
Scientific Computing and Algorithms in Industrial Simulations
Juliane Fluck, Philipp Senger, Wolfgang Ziegler, Steffen Claus, Horst Schwichtenberg
2016 J jnl
BioCreative V track 4: a shared task for the extraction of causal network information using the Biological Expression Language.
Database J. Biol. Databases Curation
Fabio Rinaldi, Tilia Renate Ellendorff, Sumit Madan, Simon Clematide, Adrian Van der Lek, Heinz-Theodor Mevissen, Juliane Fluck
2016 J jnl
Overview of the interactive task in BioCreative V.
Database J. Biol. Databases Curation
Qinghua Wang, Shabbir Syed-Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios V. Gkoutos, Afroza Khanam Irin, Lars Juhl Jensen, Silvia Jimenez, Toni Rose Jue, Ingrid M. Keseler, Sumit Madan, Sérgio Matos, Peter McQuilton, Marija Milacic, Matthew E. Mort, Jeyakumar Natarajan, Evangelos Pafilis, Emiliano Pereira, Shruti Rao, Fabio Rinaldi, Karen Rothfels, David Salgado, Raquel M. Silva, Onkar Singh, Raymund Stefancsik, Chu-Hsien Su, Suresh Subramani, Hamsa D. Tadepally, Loukia Tsaprouni, Nicole A. Vasilevsky, Xiaodong Wang, Andrew Chatr-aryamontri, Stanley J. F. Laulederkind, Sherri Matis-Mitchell, Johanna R. McEntyre, Sandra E. Orchard, Sangya Pundir, Raul Rodriguez-Esteban, Kimberly Van Auken, Zhiyong Lu, Mary L. Schaeffer, Cathy H. Wu, Lynette Hirschman, Cecilia N. Arighi
2016 J jnl
The BEL information extraction workflow (BELIEF): evaluation in the BioCreative V BEL and IAT track.
Database J. Biol. Databases Curation
Sumit Madan, Sven Hodapp, Philipp Senger, Sam Ansari, Justyna Szostak, Julia Hoeng, Manuel C. Peitsch, Juliane Fluck
2016 J jnl
Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL).
Database J. Biol. Databases Curation
Juliane Fluck, Sumit Madan, Sam Ansari, Alpha Tom Kodamullil, Reagon Karki, Majid Rastegar-Mojarad, Natalie L. Catlett, William Hayes, Justyna Szostak, Julia Hoeng, Manuel C. Peitsch
2015 J jnl
Construction of biological networks from unstructured information based on a semi-automated curation workflow.
Database J. Biol. Databases Curation
Justyna Szostak, Sam Ansari, Sumit Madan, Juliane Fluck, Marja Talikka, Anita Iskandar, Hector De Leon, Martin Hofmann-Apitius, Manuel C. Peitsch, Julia Hoeng
2014 J jnl
Detecting miRNA Mentions and Relations in Biomedical Literature.
F1000Research
Shweta Bagewadi Kawalia, Tamara Bobic, Martin Hofmann-Apitius, Juliane Fluck, Roman Klinger
2013 — conf
BEL Networks Derived from Qualitative Translations of BioNLP Shared Task Annotations.
BioNLP@ACL
Juliane Fluck, Alexander Klenner, Sumit Madan, Sam Ansari, Tamara Bobic, Julia Hoeng, Martin Hofmann-Apitius, Manuel C. Peitsch
2013 — conf
SCAI: Extracting drug-drug interactions using a rich feature vector.
SemEval@NAACL-HLT
Tamara Bobic, Juliane Fluck, Martin Hofmann-Apitius
2012 J jnl
Development of a benchmark corpus to support the automatic extraction of drug-related adverse effects from medical case reports.
J. Biomed. Informatics
Harsha Gurulingappa, Abdul Mateen Rajput, Angus Roberts, Juliane Fluck, Martin Hofmann-Apitius, Luca Toldo
2012 J jnl
Mining biomarker information in biomedical literature.
BMC Medical Informatics Decis. Mak.
Erfan Younesi, Luca Toldo, Bernd Müller, Christoph M. Friedrich, Natalia Novac, Alexander Scheer, Martin Hofmann-Apitius, Juliane Fluck
2011 — conf
A Semantic Platform for Information Retrieval from E-Health Records.
TREC
Harsha Gurulingappa, Bernd Müller, Martin Hofmann-Apitius, Juliane Fluck
2011 — conf
Information Retrieval Framework for Technology Survey in Biomedical and Chemistry Literature.
TREC
Harsha Gurulingappa, Bernd Müller, Martin Hofmann-Apitius, Juliane Fluck
2011 — conf
Overview of the TREC 2011 Chemical IR Track.
TREC
Mihai Lupu, Jiashu Zhao, Jimmy X. Huang, Harsha Gurulingappa, Juliane Fluck, Marc Zimmermann, Igor V. Filippov, John Tait
2010 — conf
Abstracts versus Full Texts and Patents: A Quantitative Analysis of Biomedical Entities.
IRFC
Bernd Müller, Roman Klinger, Harsha Gurulingappa, Heinz-Theodor Mevissen, Martin Hofmann-Apitius, Juliane Fluck, Christoph M. Friedrich
2010 — conf
Prior Art Search in Chemistry Patents Based On Semantic Concepts and Co-Citation Analysis.
TREC
Harsha Gurulingappa, Bernd Müller, Roman Klinger, Heinz-Theodor Mevissen, Martin Hofmann-Apitius, Christoph M. Friedrich, Juliane Fluck
2009 J jnl
Concept-Based Semi-Automatic Classification of Drugs.
J. Chem. Inf. Model.
Harsha Gurulingappa, Corinna Kolárik, Martin Hofmann-Apitius, Juliane Fluck
2009 — conf
Patent Retrieval in Chemistry Based on Semantically Tagged Named Entities.
TREC
Harsha Gurulingappa, Bernd Müller, Roman Klinger, Heinz-Theodor Mevissen, Martin Hofmann-Apitius, Juliane Fluck, Christoph M. Friedrich
2008 A conf
Detection of IUPAC and IUPAC-like chemical names.
ISMB
Roman Klinger, Corinna Kolárik, Juliane Fluck, Martin Hofmann-Apitius, Christoph M. Friedrich
2007 — conf
Identification of new drug classification terms in textual resources.
ISMB/ECCB (Supplement of Bioinformatics)
Corinna Kolárik, Martin Hofmann-Apitius, Marc Zimmermann, Juliane Fluck
2007 J jnl
Identifying gene-Specific Variations in Biomedical Text.
J. Bioinform. Comput. Biol.
Roman Klinger, Christoph M. Friedrich, Heinz-Theodor Mevissen, Juliane Fluck, Martin Hofmann-Apitius, Laura Inés Furlong, Ferran Sanz
2006 — conf
Biomedical and Chemical Named Entity Recognition with Conditional Random Fields: The Advantage of Dictionary Features.
SMBM
Christoph M. Friedrich, Thomas Revillion, Martin Hofmann, Juliane Fluck
2006 J jnl
Proceedings of the Second International Symposium for Semantic Mining in Biomedicine.
BMC Bioinform.
Sophia Ananiadou, Juliane Fluck
2006 — ed.
Proceedings of the Second International Symposium on Semantic Mining in Biomedicine, Jena, Germany, April 9-12, 2006.
SMBM
Sophia Ananiadou, Juliane Fluck
2006 J jnl
The Autoimmune Disease Database: a dynamically compiled literature-derived database.
BMC Bioinform.
Thomas Karopka, Juliane Fluck, Heinz-Theodor Mevissen, Änne Glass
2005 J jnl
ProMiner: rule-based protein and gene entity recognition.
BMC Bioinform.
Daniel Hanisch, Katrin Fundel, Heinz-Theodor Mevissen, Ralf Zimmer, Juliane Fluck
2003 J jnl
Microarrays: How Many Do You Need?
J. Comput. Biol.
Alexander Zien, Juliane Fluck, Ralf Zimmer, Thomas Lengauer
2003 Misc conf
Playing Biology's Name Game: Identifying Protein Names in Scientific Text.
Pacific Symposium on Biocomputing
Daniel Hanisch, Juliane Fluck, Heinz-Theodor Mevissen, Ralf Zimmer
2002 B conf
Microarrays: how many do you need?
RECOMB
Alexander Zien, Juliane Fluck, Ralf Zimmer, Thomas Lengauer