Julian Parkhill

16 papers Journal 16
YearRankTypeTitle / Venue / Authors
2022 J jnl
Genomic Shift in Population Dynamics of
Genom. Proteom. Bioinform.
Yingbo Shen, Rong Zhang, Dongyan Shao, Lu Yang, Jiayue Lu, Congcong Liu, Xueyang Wang, Junyao Jiang, Boxuan Wang, Congming Wu, Julian Parkhill, Yang Wang, Timothy R. Walsh, George F. Gao, Zhangqi Shen
2016 J jnl
The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries.
Bioinform.
Lars Barquist, Matthew Mayho, Carla A. Cummins, Amy K. Cain, Christine J. Boinett, Andrew J. Page, Gemma C. Langridge, Michael A. Quail, Jacqueline A. Keane, Julian Parkhill
2015 J jnl
Roary: rapid large-scale prokaryote pan genome analysis.
Bioinform.
Andrew J. Page, Carla A. Cummins, Martin Hunt, Vanessa K. Wong, Sandra Reuter, Matthew T. G. Holden, Maria Fookes, Daniel Falush, Jacqueline A. Keane, Julian Parkhill
2014 J jnl
Defining the Estimated Core Genome of Bacterial Populations Using a Bayesian Decision Model.
PLoS Comput. Biol.
Andries J. van Tonder, Shilan Mistry, James E. Bray, Dorothea M. C. Hill, Alison J. Cody, Chris L. Farmer, Keith P. Klugman, Anne von Gottberg, Stephen D. Bentley, Julian Parkhill, Keith A. Jolley, Martin C. J. Maiden, Angela B. Brueggemann
2013 J jnl
BamView: visualizing and interpretation of next-generation sequencing read alignments.
Briefings Bioinform.
Tim Carver, Simon R. Harris, Thomas D. Otto, Matthew Berriman, Julian Parkhill, Jacqueline A. McQuillan
2012 J jnl
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data.
Bioinform.
Tim Carver, Simon R. Harris, Matthew Berriman, Julian Parkhill, Jacqueline A. McQuillan
2012 J jnl
GeneDB - an annotation database for pathogens.
Nucleic Acids Res.
Flora J. Logan-Klumpler, Nishadi De Silva, Ulrike Böhme, Matthew B. Rogers, Giles Velarde, Jacqueline A. McQuillan, Tim Carver, Martin Aslett, Christian Olsen, Sandhya Subramanian, Isabelle Phan, Carol Farris, Siddhartha Mitra, Gowthaman Ramasamy, Haiming Wang, Adrian Tivey, Andrew Jackson, Robin Houston, Julian Parkhill, Matthew T. G. Holden, Omar S. Harb, Brian P. Brunk, Peter J. Myler, David S. Roos, Mark Carrington, Deborah F. Smith, Christiane Hertz-Fowler, Matthew Berriman
2012 J jnl
SpolPred: rapid and accurate prediction of
Bioinform.
Francesc Coll, Kim Mallard, Mark D. Preston, Stephen D. Bentley, Julian Parkhill, Ruth McNerney, Nigel J. Martin, Taane G. Clark
2010 J jnl
BamView: viewing mapped read alignment data in the context of the reference sequence.
Bioinform.
Tim Carver, Ulrike Böhme, Thomas D. Otto, Julian Parkhill, Matthew Berriman
2009 J jnl
DNAPlotter: circular and linear interactive genome visualization.
Bioinform.
Tim J. Carver, Nick R. Thomson, Alan J. Bleasby, Matthew Berriman, Julian Parkhill
2009 J jnl
Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA.
Bioinform.
Kathryn E. Holt, Yik Y. Teo, Heng Li, Satheesh Nair, Gordon Dougan, John Wain, Julian Parkhill
2008 J jnl
Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database.
Bioinform.
Tim J. Carver, Matthew Berriman, Adrian Tivey, Chinmay Patel, Ulrike Böhme, Bart Barrell, Julian Parkhill, Marie-Adèle Rajandream
2006 J jnl
Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the
Bioinform.
Georgios S. Vernikos, Julian Parkhill
2005 J jnl
ACT: the Artemis comparison tool.
Bioinform.
Tim J. Carver, Kim Rutherford, Matthew Berriman, Marie-Adèle Rajandream, Bart Barrell, Julian Parkhill
2004 J jnl
GeneDB: a resource for prokaryotic and eukaryotic organisms.
Nucleic Acids Res.
Christiane Hertz-Fowler, Chris S. Peacock, Valerie Wood, Martin Aslett, Arnaud Kerhornou, Paul Mooney, Adrian Tivey, Matthew Berriman, Neil Hall, Kim Rutherford, Julian Parkhill, Alasdair C. Ivens, Marie-Adèle Rajandream, Bart Barrell
2000 J jnl
Artemis: sequence visualization and annotation.
Bioinform.
Kim Rutherford, Julian Parkhill, James Crook, Terry Horsnell, Peter Rice, Marie-Adèle Rajandream, Bart Barrell