Jue Ruan

12 papers Journal 12
YearRankTypeTitle / Venue / Authors
2024 J jnl
A compressive seeding algorithm in conjunction with reordering-based compression.
Bioinform.
Fahu Ji, Qian Zhou, Jue Ruan, Zexuan Zhu, Xianming Liu
2024 J jnl
BSAlign: A Library for Nucleotide Sequence Alignment.
Genom. Proteom. Bioinform.
Haojing Shao, Jue Ruan
2023 J jnl
The First High-quality Reference Genome of Sika Deer Provides Insights into High-tannin Adaptation.
Genom. Proteom. Bioinform.
Xiumei Xing, Cheng Ai, Tianjiao Wang, Yang Li, Huitao Liu, Pengfei Hu, Guiwu Wang, Huamiao Liu, Hongliang Wang, Ranran Zhang, Junjun Zheng, Xiaobo Wang, Lei Wang, Yuxiao Chang, Qian Qian, Jinghua Yu, Lixin Tang, Shigang Wu, Xiujuan Shao, Alun Li, Peng Cui, Wei Zhan, Sheng Zhao, Zhichao Wu, Xiqun Shao, Yimeng Dong, Min Rong, Yihong Tan, Xuezhe Cui, Shuzhuo Chang, Xingchao Song, Tongao Yang, Limin Sun, Yan Ju, Pei Zhao, Huanhuan Fan, Ying Liu, Xinhui Wang, Wanyun Yang, Min Yang, Tao Wei, Shanshan Song, Jiaping Xu, Zhigang Yue, Qiqi Liang, Chunyi Li, Jue Ruan, Fuhe Yang
2022 J jnl
A Chromosome-level Genome Assembly of Wild Castor Provides New Insights into its Adaptive Evolution in Tropical Desert.
Genom. Proteom. Bioinform.
Jianjun Lu, Cheng Pan, Wei Fan, Wanfei Liu, Huayan Zhao, Donghai Li, Sen Wang, Lianlian Hu, Bing He, Kun Qian, Rui Qin, Jue Ruan, Qiang Lin, Shiyou Lü, Peng Cui
2013 J jnl
Determination of genomic copy number alteration emphasizing a restriction site-based strategy of genome re-sequencing.
Bioinform.
Caihong Zheng, Xuexia Miao, Yanen Li, Ying Huang, Jue Ruan, Xi Ma, Li Wang, Chung-I Wu, Jun Cai
2012 J jnl
Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads.
Bioinform.
Zechen Chong, Jue Ruan, Chung-I Wu
2009 J jnl
The Sequence Alignment/Map format and SAMtools.
Bioinform.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor T. Marth, Gonçalo R. Abecasis, Richard Durbin
2008 J jnl
TreeFam: 2008 Update.
Nucleic Acids Res.
Jue Ruan, Heng Li, Zhongzhong Chen, Avril Coghlan, Lachlan James M. Coin, Yiran Guo, Jean-Karim Hériché, Yafeng Hu, Karsten Kristiansen, Ruiqiang Li, Tao Liu, Alan M. Moses, Junjie Qin, Søren Vang, Albert J. Vilella, Abel Ureta-Vidal, Lars Bolund, Jun Wang, Richard Durbin
2007 J jnl
PigGIS: Pig Genomic Informatics System.
Nucleic Acids Res.
Jue Ruan, Yiran Guo, Heng Li, Yafeng Hu, Fei Song, Xin Huang, Karsten Kristiansen, Lars Bolund, Jun Wang
2006 J jnl
TreeFam: a curated database of phylogenetic trees of animal gene families.
Nucleic Acids Res.
Heng Li, Avril Coghlan, Jue Ruan, Lachlan James M. Coin, Jean-Karim Hériché, Lara Osmotherly, Ruiqiang Li, Tao Liu, Zhang Zhang, Lars Bolund, Gane Ka-Shu Wong, Wei-Mou Zheng, Paramvir S. Dehal, Jun Wang, Richard Durbin
2005 J jnl
ChickVD: a sequence variation database for the chicken genome.
Nucleic Acids Res.
Jing Wang, Ximiao He, Jue Ruan, Mingtao Dai, Jie Chen, Yong Zhang, Yafeng Hu, Chen Ye, Shengting Li, Lijuan Cong, Lin Fang, Bin Liu, Songgang Li, Jian Wang, David W. Burt, Gane Ka-Shu Wong, Jun Yu, Huanming Yang, Jun Wang
2005 J jnl
SilkDB: a knowledgebase for silkworm biology and genomics.
Nucleic Acids Res.
Jing Wang, Qingyou Xia, Ximiao He, Mingtao Dai, Jue Ruan, Jie Chen, Guo Yu, Haifeng Yuan, Yafeng Hu, Ruiqiang Li, Tao Feng, Chen Ye, Cheng Lu, Jun Wang, Songgang Li, Gane Ka-Shu Wong, Huanming Yang, Jian Wang, Zhonghuai Xiang, Zeyang Zhou, Jun Yu