Juan Xu

20 papers Journal 20
YearRankTypeTitle / Venue / Authors
2025 J jnl
LncCE: Landscape of Cellularly-elevated lncRNAs in Single Cells Across Normal and Cancer Tissues.
Genom. Proteom. Bioinform.
Kang Xu, Yujie Liu, Chongwen Lv, Ya Luo, Jingyi Shi, Haozhe Zou, Weiwei Zhou, Dezhong Lv, Changbo Yang, Yongsheng Li, Juan Xu
2024 J jnl
Cancer Stemness Online: A Resource for Investigating Cancer Stemness and Associations with Immune Response.
Genom. Proteom. Bioinform.
Weiwei Zhou, Minghai Su, Tiantongfei Jiang, Yunjin Xie, Jingyi Shi, Yingying Ma, Kang Xu, Gang Xu, Yongsheng Li, Juan Xu
2024 J jnl
MicroProteinDB: A database to provide knowledge on sequences, structures and function of ncRNA-derived microproteins.
Comput. Biol. Medicine
Yinan Liang, Dezhong Lv, Kefan Liu, Liting Yang, Huan Shu, Luan Wen, Chongwen Lv, Qisen Sun, Jiaqi Yin, Hui Liu, Juan Xu, Zhigang Liu, Na Ding
2023 J jnl
IEAtlas: an atlas of HLA-presented immune epitopes derived from non-coding regions.
Nucleic Acids Res.
Yangyang Cai, Dezhong Lv, Donghao Li, Jiaqi Yin, Yingying Ma, Ya Luo, Limei Fu, Na Ding, Yongsheng Li, Zhenwei Pan, Xia Li, Juan Xu
2023 J jnl
ImmCluster: an ensemble resource for immunology cell type clustering and annotations in normal and cancerous tissues.
Nucleic Acids Res.
Tiantongfei Jiang, Weiwei Zhou, Qi Sheng, Jiaxin Yu, Yunjin Xie, Na Ding, Yunpeng Zhang, Juan Xu, Yongsheng Li
2023 J jnl
Multi-omics characterization of RNA binding proteins reveals disease comorbidities and potential drugs in COVID-19.
Comput. Biol. Medicine
Jiwei Pan, Yueying Gao, Huirui Han, Tao Pan, Jing Guo, Si Li, Juan Xu, Yongsheng Li
2023 J jnl
Open a new epoch of arsenic trioxide investigation: ATOdb.
Comput. Biol. Medicine
Yanan Jiang, Jianing Li, Yujie Liu, Xiuyun Shen, Junyi Li, Fengnan Zhi, Juan Xu, Xia Li, Tingting Shao, Yingqi Xu
2022 J jnl
PRES: a webserver for decoding the functional perturbations of RNA editing sites.
Briefings Bioinform.
Dezhong Lv, Kang Xu, Changbo Yang, Yujie Liu, Ya Luo, Weiwei Zhou, Haozhe Zou, Yangyang Cai, Na Ding, Xia Li, Tingting Shao, Yongsheng Li, Juan Xu
2022 J jnl
Shedding light on the hidden human proteome expands immunopeptidome in cancer.
Briefings Bioinform.
Yongsheng Li, Yunpeng Zhang, Tao Pan, Ping Zhou, Weiwei Zhou, Yueying Gao, Shaojiang Zheng, Juan Xu
2022 J jnl
TransLnc: a comprehensive resource for translatable lncRNAs extends immunopeptidome.
Nucleic Acids Res.
Dezhong Lv, Zhenghong Chang, Yangyang Cai, Junyi Li, Liping Wang, Qiushuang Jiang, Kang Xu, Na Ding, Xia Li, Juan Xu, Yongsheng Li
2021 J jnl
CeRNASeek: an R package for identification and analysis of ceRNA regulation.
Briefings Bioinform.
Mengying Zhang, Xiyun Jin, Junyi Li, Yi Tian, Qi Wang, Xinhui Li, Juan Xu, Yongsheng Li, Xia Li
2021 J jnl
SurvivalMeth: a web server to investigate the effect of DNA methylation-related functional elements on prognosis.
Briefings Bioinform.
Chunlong Zhang, Ning Zhao, Xue Zhang, Jun Xiao, Junyi Li, Dezhong Lv, Weiwei Zhou, Yongsheng Li, Juan Xu, Xia Li
2019 J jnl
Landscape of the long non-coding RNA transcriptome in human heart.
Briefings Bioinform.
Chunjie Jiang, Na Ding, Junyi Li, Xiyun Jin, Lili Li, Tao Pan, Caiqin Huo, Yongsheng Li, Juan Xu, Xia Li
2019 J jnl
Survey of miRNA-miRNA cooperative regulation principles across cancer types.
Briefings Bioinform.
Tingting Shao, Guangjuan Wang, Hong Chen, Yunjin Xie, Xiyun Jin, Jing Bai, Juan Xu, Xia Li, Jian Huang, Yan Jin, Yongsheng Li
2019 J jnl
Systematic review of computational methods for identifying miRNA-mediated RNA-RNA crosstalk.
Briefings Bioinform.
Yongsheng Li, Xiyun Jin, Zishan Wang, Lili Li, Hong Chen, Xiaoyu Lin, Song Yi, Yunpeng Zhang, Juan Xu
2019 J jnl
Systematic review regulatory principles of non-coding RNAs in cardiovascular diseases.
Briefings Bioinform.
Yongsheng Li, Caiqin Huo, Tao Pan, Lili Li, Xiyun Jin, Xiaoyu Lin, Juan Chen, Jinwen Zhang, Zheng Guo, Juan Xu, Xia Li
2018 J jnl
Combinatorial epigenetic regulation of non-coding RNAs has profound effects on oncogenic pathways in breast cancer subtypes.
Briefings Bioinform.
Juan Xu, Zishan Wang, Shengli Li, Juan Chen, Jinwen Zhang, Chunjie Jiang, Zheng Zhao, Jing Li, Yongsheng Li, Xia Li
2017 J jnl
miRNA-miRNA crosstalk: from genomics to phenomics.
Briefings Bioinform.
Juan Xu, Tingting Shao, Na Ding, Yongsheng Li, Xia Li
2015 J jnl
Co-LncRNA: investigating the lncRNA combinatorial effects in GO annotations and KEGG pathways based on human RNA-Seq data.
Database J. Biol. Databases Curation
Zheng Zhao, Jing Bai, Aiwei Wu, Yuan Wang, Jinwen Zhang, Zishan Wang, Yongsheng Li, Juan Xu, Xia Li
2013 J jnl
Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes.
BMC Syst. Biol.
Hongbo Shi, Juan Xu, Guangde Zhang, Liangde Xu, Chunquan Li, Li Wang, Zheng Zhao, Wei Jiang, Zheng Guo, Xia Li