Juan Fernández-Recio

29 papers C 1Misc 2Journal 24Unranked 1
YearRankTypeTitle / Venue / Authors
2022 J jnl
PDBe-KB: collaboratively defining the biological context of structural data.
Nucleic Acids Res.
Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar
2021 J jnl
UEP: an open-source and fast classifier for predicting the impact of mutations in protein-protein complexes.
Bioinform.
Pep Amengual-Rigo, Juan Fernández-Recio, Victor Guallar
2020 J jnl
pyDockEneRes: per-residue decomposition of protein-protein docking energy.
Bioinform.
Miguel Romero-Durana, Brian Jiménez-García, Juan Fernández-Recio
2019 J jnl
SKEMPI 2.0: an updated benchmark of changes in protein-protein binding energy, kinetics and thermodynamics upon mutation.
Bioinform.
Justina Jankauskaite, Brian Jiménez-García, Justas Dapkunas, Juan Fernández-Recio, Iain H. Moal
2018 J jnl
LightDock: a new multi-scale approach to protein-protein docking.
Bioinform.
Brian Jiménez-García, Jorge Roel-Touris, Miguel Romero-Durana, Miquel Vidal, Daniel Jiménez-González, Juan Fernández-Recio
2017 J jnl
IRaPPA: information retrieval based integration of biophysical models for protein assembly selection.
Bioinform.
Iain H. Moal, Didier Barradas-Bautista, Brian Jiménez-García, Mieczyslaw Torchala, Arjan van der Velde, Thom Vreven, Zhiping Weng, Paul A. Bates, Juan Fernández-Recio
2015 J jnl
CCharPPI web server: computational characterization of protein-protein interactions from structure.
Bioinform.
Iain H. Moal, Brian Jiménez-García, Juan Fernández-Recio
2015 J jnl
Comment on 'protein-protein binding affinity prediction from amino acid sequence'.
Bioinform.
Iain H. Moal, Juan Fernández-Recio
2015 J jnl
pyDockSAXS: protein-protein complex structure by SAXS and computational docking.
Nucleic Acids Res.
Brian Jiménez-García, Carles Pons, Dmitri I. Svergun, Pau Bernadó, Juan Fernández-Recio
2013 J jnl
Characterizing Changes in the Rate of Protein-Protein Dissociation upon Interface Mutation Using Hotspot Energy and Organization.
PLoS Comput. Biol.
Rudi Agius, Mieczyslaw Torchala, Iain H. Moal, Juan Fernández-Recio, Paul A. Bates
2013 J jnl
SwarmDock: a server for flexible protein-protein docking.
Bioinform.
Mieczyslaw Torchala, Iain H. Moal, Raphael A. G. Chaleil, Juan Fernández-Recio, Paul A. Bates
2013 J jnl
The scoring of poses in protein-protein docking: current capabilities and future directions.
BMC Bioinform.
Iain H. Moal, Mieczyslaw Torchala, Paul A. Bates, Juan Fernández-Recio
2013 J jnl
pyDockWEB: a web server for rigid-body protein-protein docking using electrostatics and desolvation scoring.
Bioinform.
Brian Jiménez-García, Carles Pons, Juan Fernández-Recio
2012 J jnl
Cell-Dock: high-performance protein-protein docking.
Bioinform.
Carles Pons, Daniel Jiménez-González, Cecilia González-Alvarez, Harald Servat, Daniel Cabrera-Benitez, Xavier Aguilar, Juan Fernández-Recio
2012 J jnl
SKEMPI: a Structural Kinetic and Energetic database of Mutant Protein Interactions and its use in empirical models.
Bioinform.
Iain H. Moal, Juan Fernández-Recio
2011 J jnl
Prediction of protein-binding areas by small-world residue networks and application to docking.
BMC Bioinform.
Carles Pons, Fabian Glaser, Juan Fernández-Recio
2011 J jnl
Scoring by Intermolecular Pairwise Propensities of Exposed Residues (SIPPER): A New Efficient Potential for Protein-Protein Docking.
J. Chem. Inf. Model.
Carles Pons, David Talavera, Xavier de la Cruz, Modesto Orozco, Juan Fernández-Recio
2010 — ch.
Drug Design on the Cell BE.
Scientific Computing with Multicore and Accelerators
Cecilia González-Alvarez, Harald Servat, Daniel Cabrera-Benitez, Xavier Aguilar, Carles Pons, Juan Fernández-Recio, Daniel Jiménez-González
2010 J jnl
Protein docking by Rotation-Based Uniform Sampling (RotBUS) with fast computing of intermolecular contact distance and residue desolvation.
BMC Bioinform.
Albert Solernou, Juan Fernández-Recio
2010 Misc conf
Structural Prediction of Protein-RNA Interaction by Computational Docking with Propensity-Based Statistical Potentials.
Pacific Symposium on Biocomputing
Laura Perez-Cano, Albert Solernou, Carles Pons, Juan Fernández-Recio
2009 J jnl
FRODOCK: a new approach for fast rotational protein-protein docking.
Bioinform.
José Ignacio Garzón, José Ramón López-Blanco, Carles Pons, Julio A. Kovacs, Ruben Abagyan, Juan Fernández-Recio, Pablo Chacón
2009 J jnl
Predicting protein - protein interfaces as clusters of Optimal Docking Area points.
Int. J. Data Min. Bioinform.
Yasir Arafat, Joarder Kamruzzaman, Gour C. Karmakar, Juan Fernández-Recio
2009 J jnl
Pushing Structural Information into the Yeast Interactome by High-Throughput Protein Docking Experiments.
PLoS Comput. Biol.
Roberto Mosca, Carles Pons, Juan Fernández-Recio, Patrick Aloy
2008 J jnl
Identification of hot-spot residues in protein-protein interactions by computational docking.
BMC Bioinform.
Solène Grosdidier, Juan Fernández-Recio
2008 J jnl
In silico docking of urokinase plasminogen activator and integrins.
BMC Bioinform.
Bernard Degryse, Juan Fernández-Recio, Valentina Citro, Francescol Blasi, Maria Vittoria Cubellis
2008 J jnl
Structural assembly of two-domain proteins by rigid-body docking.
BMC Bioinform.
Tammy M. K. Cheng, Tom L. Blundell, Juan Fernández-Recio
2006 C conf
Predicting Protein-Protein Interface using Desolvation Energy Similarity Matching.
CIBCB
Yasir Arafat, Gour C. Karmakar, Joarder Kamruzzaman, Juan Fernández-Recio
2004 — conf
Optimized Desolvation for Rigid-Body Docking: Fast Prediction of Protein Interaction Sites.
Spanish Bioinformatics Conference
Juan Fernández-Recio
2002 Misc conf
Screened Charge Electrostatic Model in Protein-Protein Docking Simulations.
Pacific Symposium on Biocomputing
Juan Fernández-Recio, Maxim Totrov, Ruben Abagyan