João C. Setubal

27 papers B 2Misc 1Journal 9Unranked 12
YearRankTypeTitle / Venue / Authors
2025 J jnl
Editorial: Expert opinions in genomic analysis.
Frontiers Bioinform.
João C. Setubal, Alberto Paccanaro
2020 — ed.
Advances in Bioinformatics and Computational Biology - 13th Brazilian Symposium on Bioinformatics, BSB 2020, São Paulo, Brazil, November 23-27, 2020, Proceedings
BSB
João C. Setubal, Waldeyr M. C. Silva
2019 J jnl
PlantSimLab - a modeling and simulation web tool for plant biologists.
BMC Bioinform.
S. Ha, Elena S. Dimitrova, Stefan Hoops, Doaa Altarawy, Mitra Ansariola, D. Deb, Jane Glazebrook, R. Hillmer, Hossameldin Shahin, Fumiaki Katagiri, John McDowell, Molly Megraw, João C. Setubal, B. M. Tyler, Reinhard C. Laubenbacher
2017 J jnl
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses.
Nucleic Acids Res.
David Páez-Espino, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Ernest Szeto, Manoj Pillay, Jinghua Huang, Victor M. Markowitz, Torben Nielsen, Marcel Huntemann, T. B. K. Reddy, Georgios A. Pavlopoulos, Matthew B. Sullivan, Barbara J. Campbell, Feng Chen, Katherine D. McMahon, Steven J. Hallam, Vincent J. Denef, Ricardo Cavicchioli, Sean M. Caffrey, Wolfgang R. Streit, John Webster, Kim M. Handley, Ghasem H. Salekdeh, Nicolas Tsesmetzis, João C. Setubal, Phillip B. Pope, Wen-Tso Liu, Adam R. Rivers, Natalia Ivanova, Nikos Kyrpides
2015 J jnl
TCBB Special Section on the Brazilian Symposium on Bioinformatics 2013.
IEEE ACM Trans. Comput. Biol. Bioinform.
João C. Setubal, Nalvo F. Almeida
2014 J jnl
Using Entropy Estimates for DAG-Based Ontologies.
CoRR
Andrew S. Warren, João C. Setubal
2013 — ed.
Advances in Bioinformatics and Computational Biology - 8th Brazilian Symposium on Bioinformatics, BSB 2013, Recife, Brazil, November 3-7, 2013, Proceedings
BSB
João C. Setubal, Nalvo F. Almeida
2012 J jnl
SIS: a program to generate draft genome sequence scaffolds for prokaryotes.
BMC Bioinform.
Zanoni Dias, Ulisses Dias, João C. Setubal
2012 Misc conf
Sorting genomes using almost-symmetric inversions.
SAC
Zanoni Dias, Ulisses Dias, Lenwood S. Heath, João C. Setubal
2011 — conf
Using inversion signatures to generate draft genome sequence scaffolds.
BCB
Zanoni Dias, Ulisses Dias, João C. Setubal
2010 — conf
A Simulation Tool for the Study of Symmetric Inversions in Bacterial Genomes.
RECOMB-CG
Ulisses Dias, Zanoni Dias, João C. Setubal
2010 — conf
Homology prediction refinement and reconstruction of gene content and order of ancestral bacterial genomes.
BCB
Kuan Yang, João C. Setubal
2010 — conf
The Complexity and Application of Syntactic Pattern Recognition Using Finite Inductive Strings.
PRIB
Elijah Myers, Paul S. Fisher, Keith Irwin, Jinsuk Baek, João C. Setubal
2007 J jnl
PATRIC: The VBI PathoSystems Resource Integration Center.
Nucleic Acids Res.
E. E. Snyder, N. Kampanya, J. Lu, Eric K. Nordberg, H. R. Karur, Maulik Shukla, Jeetendra Soneja, Y. Tian, Tian Xue, Hyun Seung Yoo, Fengkai Zhang, C. Dharmanolla, N. V. Dongre, Joseph J. Gillespie, J. Hamelius, M. Hance, K. I. Huntington, D. Jukneliene, J. Koziski, L. Mackasmiel, S. P. Mane, V. Nguyen, A. Purkayastha, J. Shallom, G. Yu, Y. Guo, Joseph L. Gabbard, Deborah Hix, A. F. Azad, S. C. Baker, S. M. Boyle, Y. Khudyakov, X. J. Meng, C. Rupprecht, J. Vinje, Oswald Crasta, M. J. Czar, Allan Dickerman, J. Dana Eckart, Ron Kenyon, Rebecca Will, João C. Setubal, Bruno W. S. Sobral
2005 — ed.
Advances in Bioinformatics and Computational Biology, Brazilian Symposium on Bioinformatics, BSB 2005, Sao Leopoldo, Brazil, July 27-29, 2005, Proceedings
BSB
João C. Setubal, Sergio Verjovski-Almeida
2004 — conf
A framewok based in Web services orchestration for bioinformatics workflow management.
WOB
Luciano A. Digiampietri, Claudia Bauzer Medeiros, João C. Setubal
2004 — conf
A method to determine homologous protein families based on graph cliques and profiles.
WOB
Nalvo F. de Almeida Jr., João C. Setubal, Marcelo de Carvalho, Carlos Juliano M. Viana
2004 — conf
Parsing BLAST results to find pseudogenes in bacterial genomes.
WOB
Patrícia Carrião, Marcelo Perez, João C. Setubal
2003 — conf
A data model for comparative genomics.
WOB
Luciano A. Digiampietri, Claudia Bauzer Medeiros, João C. Setubal
2003 — conf
A relational database for COG data.
WOB
Marcelo Perez, Patrícia Carrião, João C. Setubal
2003 — conf
New ways for automatic detection of contaminats in EST projects.
WOB
João Piazza, João C. Setubal
2000 J jnl
Finding Minimum Congestion Spanning Trees.
ACM J. Exp. Algorithmics
Renato Fonseca F. Werneck, João C. Setubal
1999 — conf
Finding Minimum Congestion Spanning Trees.
WAE
Renato Fonseca F. Werneck, João C. Setubal, Arlindo Flávio da Conceição
1997 — conf
Augment or Push? A computational study of Bipartite Matching and Unit Capacity Flow Algorithms.
WAE
Boris V. Cherkassky, Andrew V. Goldberg, Paul Martin, João C. Setubal, Jorge Stolfi
1995 J jnl
A Parallel Implementation of the Push-Relabel Algorithm for the Maximum Flow Problem.
J. Parallel Distributed Comput.
Richard J. Anderson, João C. Setubal
1995 B conf
Multiple Alignment of Biological Sequences with Gap Flexibility.
LATIN
Joao Meidanis, João C. Setubal
1992 B conf
On the Parallel Implementation of Goldberg's Maximum Flow Algorithm.
SPAA
Richard J. Anderson, João C. Setubal