João A. Carriço

17 papers C 1Misc 2Journal 13Unranked 1
YearRankTypeTitle / Venue / Authors
2021 J jnl
Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas.
Nucleic Acids Res.
Rafael Mamede, Pedro Vila-Cerqueira, Mickael Silva, João A. Carriço, Mário Ramirez
2021 J jnl
Distance-based phylogenetic inference from typing data: a unifying view.
Briefings Bioinform.
Cátia Vaz, Marta Nascimento, João A. Carriço, Tatiana Rocher, Alexandre P. Francisco
2020 J jnl
Distance-based phylogenetic inference from typing data: a unifying view.
CoRR
Cátia Vaz, Marta Nascimento, João A. Carriço, Tatiana Rocher, Alexandre P. Francisco
2019 J jnl
Plasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing data.
Nucleic Acids Res.
Tiago F. Jesus, Bruno Ribeiro-Gonçalves, Diogo N. Silva, Valeria Bortolaia, Mário Ramirez, João A. Carriço
2018 J jnl
Fast phylogenetic inference from typing data.
Algorithms Mol. Biol.
João A. Carriço, Maxime Crochemore, Alexandre P. Francisco, Solon P. Pissis, Bruno Ribeiro-Gonçalves, Cátia Vaz
2018 J jnl
Large-Scale Simulations of Bacterial Populations Over Complex Networks.
J. Comput. Biol.
Andreia Sofia Teixeira, Pedro T. Monteiro, João A. Carriço, Francisco C. Santos, Alexandre P. Francisco
2017 J jnl
PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods.
Bioinform.
Marta Nascimento, Adriano Sousa, Mário Ramirez, Alexandre P. Francisco, João A. Carriço, Cátia Vaz
2017 C conf
Using Spark and GraphX to Parallelize Large-Scale Simulations of Bacterial Populations over Host Contact Networks.
ICA3PP
Andreia Sofia Teixeira, Pedro T. Monteiro, João A. Carriço, Francisco C. Santos, Alexandre P. Francisco
2014 J jnl
TypOn: the microbial typing ontology.
J. Biomed. Semant.
Cátia Vaz, Alexandre P. Francisco, Mickael Silva, Keith A. Jolley, James E. Bray, Hannes Pouseele, Jörg Rothgänger, Mário Ramirez, João A. Carriço
2012 J jnl
PHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods.
BMC Bioinform.
Alexandre P. Francisco, Cátia Vaz, Pedro T. Monteiro, José Melo-Cristino, Mário Ramirez, João A. Carriço
2011 Misc conf
Baiacu: A Tool for the Visual Analysis of the
PACBB
Ricardo Santos Aires, João A. Carriço, Alexandre P. Francisco, Sara C. Madeira
2011 Misc conf
Biclustering-Based Classification of Clinical Expression Time Series: A Case Study in Patients with Multiple Sclerosis.
PACBB
André Valério Carreiro, Orlando Anunciação, João A. Carriço, Sara C. Madeira
2010 — conf
An Ontology and a REST API for Sequence Based Microbial Typing Data.
JBI
João Almeida, João Tiple, Mário Ramirez, José Melo-Cristino, Cátia Vaz, Alexandre P. Francisco, João A. Carriço
2009 J jnl
Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach.
BMC Bioinform.
Alexandre P. Francisco, Miguel M. F. Bugalho, Mário Ramirez, João A. Carriço
2007 J jnl
Ranked Adjusted Rand: integrating distance and partition information in a measure of clustering agreement.
BMC Bioinform.
Francisco R. Pinto, João A. Carriço, Mário Ramirez, Jonas S. Almeida
2003 J jnl
EURISWEB - Web-based epidemiological surveillance of antibiotic-resistant pneumococci in Day Care Centers.
BMC Medical Informatics Decis. Mak.
Sara Silva, Rodrigo Gouveia-Oliveira, António Maretzek, João A. Carriço, Thorolfur Gudnason, Karl G. Kristinsson, Karl Ekdahl, António Brito-Avô, Alexander Tomasz, Ilda Santos Sanches, Hermínia de Lencastre, Jonas S. Almeida
2001 J jnl
Analysis of genomic sequences by Chaos Game Representation.
Bioinform.
Jonas S. Almeida, João A. Carriço, António Maretzek, Peter A. Noble, Madilyn Fletcher