José V. Manjón

68 papers Journal 46Unranked 22

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	DeepCERES: A deep learning method for cerebellar lobule segmentation using ultra-high resolution multimodal MRI. NeuroImage Sergio Morell-Ortega, Marina Ruiz-Perez, Marien Gadea, Roberto Vivó Hernando, Gregorio Rubio, Fernando Aparici-Robles, María de la Iglesia-Vayá, Gwenaelle Catheline, Boris Mansencal, Pierrick Coupé, José V. Manjón
2025	J	`jnl`	FLAIRBrainSeg: Fine-grained brain segmentation using FLAIR MRI only. CoRR Edern Le Bot, Rémi Giraud, Boris Mansencal, Thomas Tourdias, José V. Manjón, Pierrick Coupé
2025	J	`jnl`	Lifespan tree of brain anatomy: diagnostic values for motor and cognitive neurodegenerative diseases. CoRR Pierrick Coupé, Boris Mansencal, José V. Manjón, Patrice Péran, Wassilios G. Meissner, Thomas Tourdias, Vincent Planche
2025	J	`jnl`	Ultra-high resolution multimodal MRI dense labelled holistic brain atlas. CoRR José V. Manjón, Sergio Morell-Ortega, Marina Ruiz-Perez, Boris Mansencal, Edern Le Bot, Marien Gadea, Enrique Lanuza, Gwenaelle Catheline, Thomas Tourdias, Vincent Planche, Rémi Giraud, Denis Rivière, Jean-François Mangin, Nicole Labra Avila, Roberto Vivó Hernando, Gregorio Rubio, Fernando Aparici-Robles, María de la Iglesia-Vayá, Pierrick Coupé
2025	J	`jnl`	petBrain: A New Pipeline for Amyloid, Tau Tangles and Neurodegeneration Quantification Using PET and MRI. CoRR Pierrick Coupé, Boris Mansencal, Floréal Morandat, Sergio Morell-Ortega, Nicolas Villain, José V. Manjón, Vincent Planche
2024	J	`jnl`	DeepCERES: A Deep learning method for cerebellar lobule segmentation using ultra-high resolution multimodal MRI. CoRR Sergio Morell-Ortega, Marina Ruiz-Perez, Marien Gadea, Roberto Vivó Hernando, Gregorio Rubio, Fernando Aparici-Robles, María de la Iglesia-Vayá, Gwenaelle Catheline, Pierrick Coupé, José V. Manjón
2024	J	`jnl`	DeepThalamus: A novel deep learning method for automatic segmentation of brain thalamic nuclei from multimodal ultra-high resolution MRI. CoRR Marina Ruiz-Perez, Sergio Morell-Ortega, Marien Gadea, Roberto Vivó Hernando, Gregorio Rubio, Fernando Aparici-Robles, María de la Iglesia-Vayá, Thomas Tourdias, Pierrick Coupé, José V. Manjón
2024	J	`jnl`	MRI Rician Noise Reduction Using Recurrent Convolutional Neural Networks. IEEE Access Javier Gurrola-Ramos, Teresa E. Alarcón, Oscar S. Dalmau, José V. Manjón
2024	—	`conf`	Unsupervised Deep Learning Method for Bias Correction. MIDL Maria Perez-Caballero, Sergio Morell-Ortega, Marina Ruiz-Perez, Pierrick Coupé, José V. Manjón
2022	J	`jnl`	DeepLesionBrain: Towards a broader deep-learning generalization for multiple sclerosis lesion segmentation. Medical Image Anal. Reda Abdellah Kamraoui, Vinh-Thong Ta, Thomas Tourdias, Boris Mansencal, José V. Manjón, Pierrick Coupé
2022	J	`jnl`	Longitudinal detection of new MS lesions using Deep Learning. CoRR Reda Abdellah Kamraoui, Boris Mansencal, José V. Manjón, Pierrick Coupé
2022	J	`jnl`	vol2Brain: A New Online Pipeline for Whole Brain MRI Analysis. Frontiers Neuroinformatics José V. Manjón, José E. Romero, Roberto Vivó Hernando, Gregorio Rubio, Fernando Aparici-Robles, María de la Iglesia-Vayá, Pierrick Coupé
2021	J	`jnl`	Multi-scale graph-based grading for Alzheimer's disease prediction. Medical Image Anal. Kilian Hett, Vinh-Thong Ta, Ipek Oguz, José V. Manjón, Pierrick Coupé
2021	—	`conf`	POPCORN: Progressive Pseudo-Labeling with Consistency Regularization and Neighboring. MICCAI (2) Reda Abdellah Kamraoui, Vinh-Thong Ta, Nicolas Papadakis, Fanny Compaire, José V. Manjón, Pierrick Coupé
2021	J	`jnl`	POPCORN: Progressive Pseudo-labeling with Consistency Regularization and Neighboring. CoRR Reda Abdellah Kamraoui, Vinh-Thong Ta, Nicolas Papadakis, Fanny Compaire, José V. Manjón, Pierrick Coupé
2020	J	`jnl`	AssemblyNet: A large ensemble of CNNs for 3D whole brain MRI segmentation. NeuroImage Pierrick Coupé, Boris Mansencal, Michaël Clément, Rémi Giraud, Baudouin Denis de Senneville, Vinh-Thong Ta, Vincent Lepetit, José V. Manjón
2020	—	`conf`	Blind MRI Brain Lesion Inpainting Using Deep Learning. SASHIMI@MICCAI José V. Manjón, José E. Romero, Roberto Vivó Hernando, Gregorio Rubio, Fernando Aparici-Robles, María de la Iglesia-Vayá, Thomas Tourdias, Pierrick Coupé
2020	J	`jnl`	RegQCNET: Deep Quality Control for Image-to-template Brain MRI Registration. CoRR Baudouin Denis de Senneville, José V. Manjón, Pierrick Coupé
2020	J	`jnl`	Towards broader generalization of deep learning methods for multiple sclerosis lesion segmentation. CoRR Reda Abdellah Kamraoui, Vinh-Thong Ta, Thomas Tourdias, Boris Mansencal, José V. Manjón, Pierrick Coupé
2019	J	`jnl`	An Optimized PatchMatch for Multi-scale and Multi-feature Label Fusion. CoRR Rémi Giraud, Vinh-Thong Ta, Nicolas Papadakis, José V. Manjón, D. Louis Collins, Pierrick Coupé, Alzheimer's Disease Neuroimaging Initiative
2019	—	`conf`	AssemblyNet: A Novel Deep Decision-Making Process for Whole Brain MRI Segmentation. MICCAI (3) Pierrick Coupé, Boris Mansencal, Michaël Clément, Rémi Giraud, Baudouin Denis de Senneville, Vinh-Thong Ta, Vincent Lepetit, José V. Manjón
2019	J	`jnl`	AssemblyNet: A Novel Deep Decision-Making Process for Whole Brain MRI Segmentation. CoRR Pierrick Coupé, Boris Mansencal, Michaël Clément, Rémi Giraud, Baudouin Denis de Senneville, Vinh-Thong Ta, Vincent Lepetit, José V. Manjón
2019	J	`jnl`	AssemblyNet: A large ensemble of CNNs for 3D Whole Brain MRI Segmentation. CoRR Pierrick Coupé, Boris Mansencal, Michaël Clément, Rémi Giraud, Baudouin Denis de Senneville, Vinh-Thong Ta, Vincent Lepetit, José V. Manjón
2019	J	`jnl`	MRI denoising using Deep Learning and Non-local averaging. CoRR José V. Manjón, Pierrick Coupé
2019	J	`jnl`	Multi-scale Graph-based Grading for Alzheimer's Disease Prediction. CoRR Kilian Hett, Vinh-Thong Ta, José V. Manjón, Pierrick Coupé
2018	J	`jnl`	Adaptive fusion of texture-based grading for Alzheimer's disease classification. Comput. Medical Imaging Graph. Kilian Hett, Vinh-Thong Ta, José V. Manjón, Pierrick Coupé, Alzheimer's Disease Neuroimaging Initiative
2018	J	`jnl`	Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images. NeuroImage Aaron Carass, Jennifer L. Cuzzocreo, Shuo Han, Carlos R. Hernandez-Castillo, Paul E. Rasser, Melanie Ganz, Vincent Beliveau, Jose Dolz, Ismail Ben Ayed, Christian Desrosiers, Benjamin Thyreau, José E. Romero, Pierrick Coupé, José V. Manjón, Vladimir S. Fonov, D. Louis Collins, Sarah H. Ying, Chiadi U. Onyike, Jerry L. Prince
2018	J	`jnl`	Corrigendum to "HIPS: A new hippocampus subfield segmentation method" [NeuroImage 163 (2017) 286-295]. NeuroImage José E. Romero, Pierrick Coupé, José V. Manjón
2018	—	`conf`	Graph of Brain Structures Grading for Early Detection of Alzheimer's Disease. MICCAI (3) Kilian Hett, Vinh-Thong Ta, José V. Manjón, Pierrick Coupé
2018	—	`conf`	Graph of Hippocampal Subfields Grading for Alzheimer's Disease Prediction. MLMI@MICCAI Kilian Hett, Vinh-Thong Ta, José V. Manjón, Pierrick Coupé
2018	—	`conf`	LesionBrain: An Online Tool for White Matter Lesion Segmentation. Patch-MI@MICCAI Pierrick Coupé, Thomas Tourdias, Pierre Linck, José E. Romero, José V. Manjón
2018	—	`conf`	MRI Denoising Using Deep Learning. Patch-MI@MICCAI José V. Manjón, Pierrick Coupé
2018	—	`conf`	MRI Denoising and Artefact Removal Using Self-Organizing Maps for Fast Global Block-Matching. Patch-MI@MICCAI Lee B. Reid, Ashley Gillman, Alex M. Pagnozzi, José V. Manjón, Jurgen Fripp
2018	J	`jnl`	MRI white matter lesion segmentation using an ensemble of neural networks and overcomplete patch-based voting. Comput. Medical Imaging Graph. José V. Manjón, Pierrick Coupé, Parnesh Raniga, Ying Xia, Patricia M. Desmond, Jurgen Fripp, Olivier Salvado
2017	—	`conf`	Adaptive Fusion of Texture-Based Grading: Application to Alzheimer's Disease Detection. Patch-MI@MICCAI Kilian Hett, Vinh-Thong Ta, José V. Manjón, Pierrick Coupé
2017	—	`conf`	Automated cartilage segmentation from 3D MR images of hip joint using an ensemble of neural networks. ISBI Ying Xia, José V. Manjón, Craig Engstrom, Stuart Crozier, Olivier Salvado, Jurgen Fripp
2017	J	`jnl`	CERES: A new cerebellum lobule segmentation method. NeuroImage José E. Romero, Pierrick Coupé, Rémi Giraud, Vinh-Thong Ta, Vladimir S. Fonov, Min Tae M. Park, M. Mallar Chakravarty, Aristotle N. Voineskos, José V. Manjón
2017	—	`conf`	Early Prediction of Alzheimer's Disease with Non-local Patch-Based Longitudinal Descriptors. Patch-MI@MICCAI Gerard Sanroma, Víctor Andrea, Oualid M. Benkarim, José V. Manjón, Pierrick Coupé, Oscar Camara, Gemma Piella, Miguel Ángel González Ballester
2017	J	`jnl`	HIPS: A new hippocampus subfield segmentation method. NeuroImage José E. Romero, Pierrick Coupé, José V. Manjón
2017	—	`conf`	Hippocampus Subfield Segmentation Using a Patch-Based Boosted Ensemble of Autocontext Neural Networks. Patch-MI@MICCAI José V. Manjón, Pierrick Coupé
2017	J	`jnl`	Multi-template analysis of human perirhinal cortex in brain MRI: Explicitly accounting for anatomical variability. NeuroImage Long Xie, John Pluta, Sandhitsu R. Das, Laura E. M. Wisse, Hongzhi Wang, Lauren Mancuso, Dasha Kliot, Brian B. Avants, Song-Lin Ding, José V. Manjón, David A. Wolk, Paul A. Yushkevich
2016	—	`conf`	Accounting for the Confound of Meninges in Segmenting Entorhinal and Perirhinal Cortices in T1-Weighted MRI. MICCAI (2) Long Xie, Laura E. M. Wisse, Sandhitsu R. Das, Hongzhi Wang, David A. Wolk, José V. Manjón, Paul A. Yushkevich
2016	J	`jnl`	An Optimized PatchMatch for multi-scale and multi-feature label fusion. NeuroImage Rémi Giraud, Vinh-Thong Ta, Nicolas Papadakis, José V. Manjón, D. Louis Collins, Pierrick Coupé
2016	J	`jnl`	Automatic thalamus and hippocampus segmentation from MP2RAGE: comparison of publicly available methods and implications for DTI quantification. Int. J. Comput. Assist. Radiol. Surg. Erhard T. Næss-Schmidt, Anna Tietze, Jakob Udby Blicher, Mikkel V. Petersen, Irene K. Mikkelsen, Pierrick Coupé, José V. Manjón, Simon F. Eskildsen
2016	—	`conf`	HIST: HyperIntensity Segmentation Tool. Patch-MI@MICCAI José V. Manjón, Pierrick Coupé, Parnesh Raniga, Ying Xia, Jurgen Fripp, Olivier Salvado
2016	—	`conf`	High Resolution Hippocampus Subfield Segmentation Using Multispectral Multiatlas Patch-Based Label Fusion. Patch-MI@MICCAI José E. Romero, Pierrick Coupé, José V. Manjón
2016	—	`conf`	Non-local MRI Library-Based Super-Resolution: Application to Hippocampus Subfield Segmentation. Patch-MI@MICCAI José E. Romero, Pierrick Coupé, José V. Manjón
2016	—	`conf`	Patch-Based DTI Grading: Application to Alzheimer's Disease Classification. Patch-MI@MICCAI Kilian Hett, Vinh-Thong Ta, Rémi Giraud, Mary Mondino, José V. Manjón, Pierrick Coupé
2016	J	`jnl`	volBrain: An Online MRI Brain Volumetry System. Frontiers Neuroinformatics José V. Manjón, Pierrick Coupé
2015	J	`jnl`	MRI noise estimation and denoising using non-local PCA. Medical Image Anal. José V. Manjón, Pierrick Coupé, Antonio Buades
2015	—	`conf`	Patch-Based Segmentation from MP2RAGE Images: Comparison to Conventional Techniques. Patch-MI@MICCAI Erhard T. Næss-Schmidt, Anna Tietze, Irene K. Mikkelsen, Mikkel V. Petersen, Jakob Udby Blicher, Pierrick Coupé, José V. Manjón, Simon F. Eskildsen
2014	J	`jnl`	Nonlocal Intracranial Cavity Extraction. Int. J. Biomed. Imaging José V. Manjón, Simon F. Eskildsen, Pierrick Coupé, José E. Romero, D. Louis Collins, Montserrat Robles
2013	J	`jnl`	Collaborative patch-based super-resolution for diffusion-weighted images. NeuroImage Pierrick Coupé, José V. Manjón, Maxime Chamberland, Maxime Descoteaux, Bassem Hiba
2012	J	`jnl`	A CANDLE for a deeper in vivo insight. Medical Image Anal. Pierrick Coupé, Martin Munz, José V. Manjón, Edward S. Ruthazer, D. Louis Collins
2012	J	`jnl`	BEaST: Brain extraction based on nonlocal segmentation technique. NeuroImage Simon F. Eskildsen, Pierrick Coupé, Vladimir S. Fonov, José V. Manjón, Kelvin K. Leung, Nicolas Guizard, Shafik N. Wassef, Lasse Riis Østergaard, D. Louis Collins
2012	J	`jnl`	New methods for MRI denoising based on sparseness and self-similarity. Medical Image Anal. José V. Manjón, Pierrick Coupé, Antonio Buades, D. Louis Collins, Montserrat Robles
2012	J	`jnl`	Simultaneous segmentation and grading of anatomical structures for patient's classification: Application to Alzheimer's disease. NeuroImage Pierrick Coupé, Simon F. Eskildsen, José V. Manjón, Vladimir S. Fonov, D. Louis Collins
2011	J	`jnl`	Patch-based segmentation using expert priors: Application to hippocampus and ventricle segmentation. NeuroImage Pierrick Coupé, José V. Manjón, Vladimir S. Fonov, Jens C. Pruessner, Montserrat Robles, D. Louis Collins
2011	—	`conf`	Simultaneous Segmentation and Grading of Hippocampus for Patient Classification with Alzheimer's Disease. MICCAI (3) Pierrick Coupé, Simon F. Eskildsen, José V. Manjón, Vladimir S. Fonov, D. Louis Collins
2010	J	`jnl`	Improved estimates of partial volume coefficients from noisy brain MRI using spatial context. NeuroImage José V. Manjón, Jussi Tohka, Montserrat Robles
2010	J	`jnl`	MRI Superresolution Using Self-Similarity and Image Priors. Int. J. Biomed. Imaging José V. Manjón, Pierrick Coupé, Antonio Buades, D. Louis Collins, Montserrat Robles
2010	J	`jnl`	Non-local MRI upsampling. Medical Image Anal. José V. Manjón, Pierrick Coupé, Antonio Buades, Vladimir S. Fonov, D. Louis Collins, Montserrat Robles
2010	—	`conf`	Nonlocal Patch-Based Label Fusion for Hippocampus Segmentation. MICCAI (3) Pierrick Coupé, José V. Manjón, Vladimir S. Fonov, Jens C. Pruessner, Montserrat Robles, D. Louis Collins
2010	J	`jnl`	Robust Rician noise estimation for MR images. Medical Image Anal. Pierrick Coupé, José V. Manjón, Elias Gedamu, Douglas L. Arnold, Montserrat Robles, D. Louis Collins
2009	—	`conf`	An Object-Based Method for Rician Noise Estimation in MR Images. MICCAI (1) Pierrick Coupé, José V. Manjón, Elias Gedamu, Douglas L. Arnold, Montserrat Robles, D. Louis Collins
2009	J	`jnl`	Multicomponent MR Image Denoising. Int. J. Biomed. Imaging José V. Manjón, Neil A. Thacker, Juan José Lull, Gracián García-Martí, Luis Martí-Bonmatí, Montserrat Robles
2008	J	`jnl`	MRI denoising using Non-Local Means. Medical Image Anal. José V. Manjón, José Carbonell-Caballero, Juan José Lull, Gracián García-Martí, Luis Martí-Bonmatí, Montserrat Robles
2007	J	`jnl`	A nonparametric MRI inhomogeneity correction method. Medical Image Anal. José V. Manjón, Juan José Lull, José Carbonell-Caballero, Gracián García-Martí, Luis Martí-Bonmatí, Montserrat Robles