José P. Pinto

15 papers A* 1C 1Misc 1Journal 8Unranked 4
YearRankTypeTitle / Venue / Authors
2020 A* conf
Semantic Storytelling Automation: A Context-Aware and Metadata-Driven Approach.
ACM Multimedia
Paula Viana, Pedro Carvalho, Maria Teresa Andrade, Pieter P. Jonker, Vasileios Papanikolaou, Inês N. Teixeira, Luís Vilaça, José P. Pinto, Tiago Soares da Costa
2019 J jnl
Parallel clustering of single cell transcriptomic data with split-merge sampling on Dirichlet process mixtures.
Bioinform.
Tiehang Duan, José P. Pinto, Xiaohui Xie
2018 J jnl
Parallel Clustering of Single Cell Transcriptomic Data with Split-Merge Sampling on Dirichlet Process Mixtures.
CoRR
Tiehang Duan, José P. Pinto, Xiaohui Xie
2018 J jnl
StemMapper: a curated gene expression database for stem cell lineage analysis.
Nucleic Acids Res.
José P. Pinto, Rui S. R. Machado, Ramiro Magno, Daniel V. Oliveira, Susana Machado, Raquel P. Andrade, José Bragança, Isabel Duarte, Matthias E. Futschik
2015 J jnl
StemChecker: a web-based tool to discover and explore stemness signatures in gene sets.
Nucleic Acids Res.
José P. Pinto, Ravi Kiran Reddy Kalathur, Daniel V. Oliveira, Tânia Barata, Rui S. R. Machado, Susana Machado, Ivette Pacheco-Leyva, Isabel Duarte, Matthias E. Futschik
2014 J jnl
StemCellNet: an interactive platform for network-oriented investigations in stem cell biology.
Nucleic Acids Res.
José P. Pinto, Ravi Kiran Reddy Kalathur, Rui S. R. Machado, Joana M. Xavier, José Bragança, Matthias E. Futschik
2011 J jnl
A Study of the Short and Long-term Regulation of E. coli Metabolic Pathways.
J. Integr. Bioinform.
Anália Lourenço, Sónia Carneiro, José P. Pinto, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha
2011 Misc conf
Interpreting the Regulatory Interplay in
PACBB
Anália Lourenço, Sónia Carneiro, José P. Pinto, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha
2010 — conf
A software tool for network topology analysis under a metabolic engineering perspective.
BCB
José P. Pinto, Isabel Rocha, Miguel Rocha
2010 J jnl
OptFlux: an open-source software platform for in silico metabolic engineering.
BMC Syst. Biol.
Isabel Rocha, Paulo Maia, Pedro Evangelista, Paulo Vilaça, Simão Soares, José P. Pinto, Jens Nielsen, Kiran Raosaheb Patil, Eugénio C. Ferreira, Miguel Rocha
2008 — conf
Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis.
IWPACBB
José P. Pinto, Oscar Dias, Anália Lourenço, Sónia Carneiro, Eugénio C. Ferreira, Isabel Rocha, Miguel Rocha
2008 J jnl
Natural computation meta-heuristics for the in silico optimization of microbial strains.
BMC Bioinform.
Miguel Rocha, Paulo Maia, Rui Mendes, José P. Pinto, Eugénio C. Ferreira, Jens Nielsen, Kiran Raosaheb Patil, Isabel Rocha
2007 — conf
Evaluating Evolutionary Algorithms and Differential Evolution for the Online Optimization of Fermentation Processes.
EvoBIO
Miguel Rocha, José P. Pinto, Isabel Rocha, Eugénio C. Ferreira
2007 — conf
Evaluating Simulated Annealing Algorithms in the Optimization of Bacterial Strains.
EPIA Workshops
Miguel Rocha, Rui Mendes, Paulo Maia, José P. Pinto, Isabel Rocha, Eugénio C. Ferreira
2007 C conf
Optimization of Bacterial Strains with Variable-Sized Evolutionary Algorithms.
CIBCB
Miguel Rocha, José P. Pinto, Isabel Rocha, Eugénio C. Ferreira