José-Jesús Fernández

70 papers C 9Misc 2Journal 37Unranked 20
YearRankTypeTitle / Venue / Authors
2024 J jnl
Acceleration of 3D feature-enhancing noise filtering in hybrid CPU/GPU systems.
J. Supercomput.
Vicente González Ruiz, Juan José Moreno, José-Jesús Fernández
2023 J jnl
FlowDenoising: Structure-preserving denoising in 3D electron microscopy (3DEM).
SoftwareX
Vicente González Ruiz, José-Jesús Fernández
2022 J jnl
Computational methods for three-dimensional electron microscopy (3DEM).
Comput. Methods Programs Biomed.
José-Jesús Fernández, Antonio Martínez-Sánchez
2022 J jnl
HPC enables efficient 3D membrane segmentation in electron tomography.
J. Supercomput.
Juan José Moreno, Ester M. Garzón, José-Jesús Fernández, Antonio Martínez-Sánchez
2022 J jnl
Optical flow driven interpolation for isotropic FIB-SEM reconstructions.
Comput. Methods Programs Biomed.
Vicente González Ruiz, J. P. García-Ortiz, M. R. Fernández-Fernández, José-Jesús Fernández
2020 J jnl
PolishEM: image enhancement in FIB-SEM.
Bioinform.
José-Jesús Fernández, Teobaldo E. Torres, Eva Martin-Solana, Gerardo F. Goya, Maria-Rosario Fernandez-Fernandez
2018 J jnl
TomoEED: fast edge-enhancing denoising of tomographic volumes.
Bioinform.
Juan José Moreno, Antonio Martínez-Sánchez, José Antonio Martínez, Ester M. Garzón, José-Jesús Fernández
2012 — conf
A generic model for ridges: A new framework to characterise biological planar structures.
ISBI
Antonio Martínez-Sánchez, Inmaculada García, José-Jesús Fernández
2012 J jnl
Automatic tuning of the sparse matrix vector product on GPUs based on the ELLR-T approach.
Parallel Comput.
Francisco Vázquez, José-Jesús Fernández, Ester M. Garzón
2012 C conf
Dynamic Load Scheduling on CPU-GPU for Iterative Tomographic Reconstruction.
ISPA
Jose Ignacio Agulleiro Baldo, Francisco Miguel Vázquez López, Ester M. Garzón, José-Jesús Fernández
2012 C conf
Fast Sparse Matrix Matrix Product Based on ELLR-T and GPU Computing.
ISPA
Francisco Vázquez, Gloria Ortega, José-Jesús Fernández, Inmaculada García, Ester M. Garzón
2012 Misc conf
Procedure for Detection of Membranes in Three-Dimensional Subcellular Density Maps.
PACBB
Antonio Martínez-Sánchez, Inmaculada García, José-Jesús Fernández
2012 — conf
Segmentation of Planar Structures in Bioimaging.
VISAPP (2)
Antonio Martínez-Sánchez, Inmaculada García, José-Jesús Fernández
2011 J jnl
A new approach for sparse matrix vector product on NVIDIA GPUs.
Concurr. Comput. Pract. Exp.
Francisco Vázquez, José-Jesús Fernández, Ester M. Garzón
2011 J jnl
Fast tomographic reconstruction on multicore computers.
Bioinform.
Jose Ignacio Agulleiro Baldo, José-Jesús Fernández
2011 J jnl
Matrix Implementation of Simultaneous Iterative Reconstruction Technique (SIRT) on GPUs.
Comput. J.
Francisco Vázquez, Ester M. Garzón, José-Jesús Fernández
2011 C conf
Multi-core Desktop Processors Make Possible Real-Time Electron Tomography.
PDP
Jose Ignacio Agulleiro Baldo, Ester M. Garzón, Inmaculada García, José-Jesús Fernández
2011 J jnl
Parallel algorithms for continuous multifacility competitive location problems.
J. Glob. Optim.
Juana López Redondo, José-Jesús Fernández, Inmaculada García, Pilar Martínez Ortigosa
2011 J jnl
Solving the facility location and design (1∣1)-centroid problem via parallel algorithms.
J. Supercomput.
Juana López Redondo, José-Jesús Fernández, Inmaculada García, Pilar Martínez Ortigosa
2010 Misc conf
A Hybrid Parallel Approach for 3D Reconstruction of Cellular Specimens.
DCAI
M. Laura da Silva, Javier Roca Piera, José-Jesús Fernández
2010 J jnl
Analytical Performance Prediction for Iterative Reconstruction Techniques in Electron Tomography of Biological Structures.
Int. J. High Perform. Comput. Appl.
Paula Cecilia Fritzsche, José-Jesús Fernández, Dolores Rexachs, Inmaculada García, Emilio Luque
2010 J jnl
Heuristics for the facility location and design (1|1)-centroid problem on the plane.
Comput. Optim. Appl.
Juana López Redondo, José-Jesús Fernández, Inmaculada García, Pilar Martínez Ortigosa
2010 C conf
Improving the Performance of the Sparse Matrix Vector Product with GPUs.
CIT
Francisco Vázquez, Gloria Ortega, José-Jesús Fernández, Ester M. Garzón
2010 — conf
Real-Time Electron Tomography Based on GPU Computing.
Euro-Par Workshops
José Antonio Martínez, Francisco Vázquez, Ester M. Garzón, José-Jesús Fernández
2010 J jnl
Three-dimensional feature-preserving noise reduction for real-time electron tomography.
Digit. Signal Process.
José-Jesús Fernández, José Antonio Martínez
2010 C conf
Ultra-fast Tomographic Reconstruction with a Highly Optimized Weighted Back-Projection Algorithm.
PDP
Jose Ignacio Agulleiro Baldo, Ester M. Garzón, Inmaculada García Fernández, José-Jesús Fernández
2010 J jnl
XMSF: Structure-preserving noise reduction and pre-segmentation in microscope tomography.
Bioinform.
Jose-Roman Bilbao-Castro, Carlos Oscar Sánchez Sorzano, Inmaculada García, José-Jesús Fernández
2009 J jnl
A robust and efficient algorithm for planar competitive location problems.
Ann. Oper. Res.
Juana López Redondo, José-Jesús Fernández, Inmaculada García, Pilar Martínez Ortigosa
2009 — conf
Evaluation of Master-Slave Approaches for 3D Reconstruction in Electron Tomography.
IWANN (2)
M. Laura da Silva, Javier Roca Piera, José-Jesús Fernández
2009 J jnl
Solving the Multiple Competitive Facilities Location and Design Problem on the Plane.
Evol. Comput.
Juana López Redondo, José-Jesús Fernández, Inmaculada García, Pilar Martínez Ortigosa
2009 J jnl
TOMOBFLOW: feature-preserving noise filtering for electron tomography.
BMC Bioinform.
José-Jesús Fernández
2008 J jnl
Efficient parallel implementation of iterative reconstruction algorithms for electron tomography.
J. Parallel Distributed Comput.
José-Jesús Fernández, Dan Gordon, Rachel Gordon
2008 C conf
Fast Tomographic Reconstruction with Vectorized Backprojection.
PDP
Jose Ignacio Agulleiro Baldo, Ester M. Garzón, Inmaculada García, José-Jesús Fernández
2008 — ch.
Image Restoration in Electron Cryotomography - Towards Cellular Ultrastructure at Molecular Level.
Innovations in Hybrid Intelligent Systems
José-Jesús Fernández, Sam Li, R. A. Crowther
2008 — ch.
Structure-Preserving Noise Reduction in Biological Imaging.
Innovations in Hybrid Intelligent Systems
José-Jesús Fernández, Sam Li, Vladan Lucic
2007 — conf
A Load Balancing Framework in Multithreaded Tomographic Reconstruction.
PARCO
José Antonio Álvarez-Bermejo, Javier Roca Piera, José-Jesús Fernández
2007 J jnl
A population global optimization algorithm to solve the image alignment problem in electron crystallography.
J. Glob. Optim.
Pilar Martínez Ortigosa, Juana López Redondo, Inmaculada García, José-Jesús Fernández
2007 J jnl
EGEETomo: a user-friendly, fault-tolerant and grid-enabled application for 3D reconstruction in electron tomography.
Bioinform.
Jose-Roman Bilbao-Castro, Inmaculada García, José-Jesús Fernández
2007 J jnl
Electron tomography of complex biological specimens on the Grid.
Future Gener. Comput. Syst.
José-Jesús Fernández, Inmaculada García, José María Carazo, Roberto Marabini
2007 J jnl
High performance noise reduction for biomedical multidimensional data.
Digit. Signal Process.
Siham Tabik, Ester M. Garzón, Inmaculada García, José-Jesús Fernández
2007 — conf
Multithreaded Tomographic Reconstruction.
PVM/MPI
José Antonio Álvarez-Bermejo, Javier Roca Piera, José-Jesús Fernández
2007 J jnl
Parameter optimization in 3D reconstruction on a large scale grid.
Parallel Comput.
Jose-Roman Bilbao-Castro, A. Merino, Inmaculada García, José María Carazo, José-Jesús Fernández
2007 — conf
Three-Dimensional Anisotropic Noise Reduction with Automated Parameter Tuning: Application to Electron Cryotomography.
CAEPIA
José-Jesús Fernández, Sam Li, Vladan Lucic
2006 — conf
Evaluation of Parallel Paradigms on Anisotropic Nonlinear Diffusion.
Euro-Par
Siham Tabik, Ester M. Garzón, Inmaculada García, José-Jesús Fernández
2006 J jnl
Image processing and 3-D reconstruction in electron microscopy.
IEEE Signal Process. Mag.
José-Jesús Fernández, Carlos Oscar Sánchez Sorzano, Roberto Marabini, José María Carazo
2006 C conf
Multiprocessing of Anisotropic Nonlinear Diffusion for Filtering 3D Images.
PDP
Siham Tabik, Ester M. Garzón, Inmaculada García, José-Jesús Fernández
2005 C conf
A Performance Prediction for Iterative Reconstruction Techniques on Tomography.
PDP
Paula Cecilia Fritzsche, Ana Ripoll, Emilio Luque, José-Jesús Fernández, Inmaculada García
2005 J jnl
Anisotropic nonlinear filtering of cellular structures in cryoelectron tomography.
Comput. Sci. Eng.
José-Jesús Fernández, Sam Li
2005 — conf
Filtering 3D images in Structural Biology with Anisotropic Nonlinear Diffusion on SMP Clusters.
PARCO
Siham Tabik, Ester M. Garzón, Inmaculada García, José-Jesús Fernández
2004 J jnl
3-D reconstruction of 2-D crystals in real space.
IEEE Trans. Image Process.
Roberto Marabini, Carlos Oscar Sánchez Sorzano, Samuel Matej, José-Jesús Fernández, José María Carazo, Gabor T. Herman
2004 — conf
A Performance Prediction Model for Tomographic Reconstruction in Structural Biology.
VECPAR
Paula Cecilia Fritzsche, José-Jesús Fernández, Ana Ripoll, Inmaculada García, Emilio Luque
2004 — conf
A global optimization approach to image translational alignment in electron microscopy.
SMC (5)
Juana López Redondo, Pilar Martínez Ortigosa, Inmaculada García, José-Jesús Fernández
2004 J jnl
Biological Structure Determination by EM is Well Suited to Grid Computing.
New Gener. Comput.
José-Jesús Fernández, Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García
2004 — conf
Image Registration in Electron Microscopy. A Stochastic Optimization Approach.
ICIAR (2)
Juana López Redondo, Pilar Martínez Ortigosa, Inmaculada García, José-Jesús Fernández
2004 J jnl
On the Suitability of Biological Structure Determination by Electron Microscopy to Grid Computing.
New Gener. Comput.
José-Jesús Fernández, Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García
2004 C conf
Parallelization and Comparison of 3D Iterative Reconstruction Algorithms.
PDP
Jose-Roman Bilbao-Castro, José María Carazo, José-Jesús Fernández, Inmaculada García
2004 J jnl
Phan3D: design of biological phantoms in 3D electron microscopy.
Bioinform.
Jose-Roman Bilbao-Castro, Carlos Oscar Sánchez Sorzano, Inmaculada García, José-Jesús Fernández
2004 J jnl
The Potential Of Grid Computing In Three-Dimensional Electron Microscopy.
Parallel Process. Lett.
Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García, José-Jesús Fernández
2004 J jnl
Three-dimensional reconstruction of cellular structures by electron microscope tomography and parallel computing.
J. Parallel Distributed Comput.
José-Jesús Fernández, José María Carazo, Inmaculada García
2003 J jnl
Educational issues on number representation and arithmetic in computers: an undergraduate laboratory.
IEEE Trans. Educ.
José-Jesús Fernández, Inmaculada García, Ester M. Garzón
2003 J jnl
Floating point arithmetic teaching for computational science.
Future Gener. Comput. Syst.
José-Jesús Fernández, Inmaculada García, Ester M. Garzón
2003 — conf
Grid Computing in Structure Determination of Biological Specimens by Electron Microscope Tomography.
European Across Grids Conference
José-Jesús Fernández, Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García
2003 — conf
Parallel iterative reconstruction methods for structure determination of biological specimens by electron microscopy.
ICIP (1)
Jose-Roman Bilbao-Castro, José María Carazo, Inmaculada García, José-Jesús Fernández
2002 — conf
3D reconstruction of 2D crystals from projections in real space.
ISBI
Roberto Marabini, Gabor T. Herman, Carlos Oscar Sánchez Sorzano, José María Carazo, José-Jesús Fernández, Samuel Matej
2002 — conf
An Approach to Teaching Computer Arithmetic.
VECPAR
Ester M. Garzón, Inmaculada García, José-Jesús Fernández
2002 — conf
High Performance Computing in Electron Microscope Tomography of Complex Biological Structures.
VECPAR
José-Jesús Fernández, Albert F. Lawrence, Javier Roca Piera, Inmaculada García, Mark H. Ellisman, José María Carazo
2002 J jnl
Progressive Image Transmission in Telemicroscopy: A Quantitative Approach for Electron Microscopy Images of Biological Specimens.
Real Time Imaging
Vicente González Ruiz, José-Jesús Fernández, Manuel F. López, Inmaculada García
2001 — conf
Progessive-fidelity Image Transmission for Telebrowsing: An Efficient Implementation.
VIIP
Manuel F. López, Vicente González Ruiz, José-Jesús Fernández, Inmaculada García
2001 — conf
Techniques for Speeding up the SPIHT Progressive Image Compressor.
VIIP
Vicente González Ruiz, Manuel F. López, José-Jesús Fernández, Inmaculada García
1994 — conf
Prototype for a new distributed database of volume data obtained by 3D imaging.
VBC
Roberto Marabini, C. Vaquerizo, José-Jesús Fernández, José María Carazo, M. Ladjadj, O. Odesanya, J. Frank