Josien P. W. Pluim

210 papers A* 2A 3B 27Misc 1Journal 107Unranked 66

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	DeepMultiConnectome: Deep multi-task prediction of structural connectomes directly from diffusion MRI tractography. NeuroImage Marcus J. Vroemen, Yuqian Chen, Yui Lo, Tengfei Xue, Tom Weidong Cai, Fan Zhang, Josien P. W. Pluim, Lauren J. O'Donnell
2026	J	`jnl`	Scaling up self-supervised learning for improved surgical foundation models. Medical Image Anal. Tim J. M. Jaspers, Ronald L. P. D. de Jong, Yiping Li, Carolus H. J. Kusters, Franciscus H. A. Bakker, Romy C. van Jaarsveld, Gino M. Kuiper, Richard van Hillegersberg, Jelle P. Ruurda, Willem M. Brinkman, Josien P. W. Pluim, Peter H. N. de With, Marcel Breeuwer, Yasmina Al Khalil, Fons van der Sommen
2025	J	`jnl`	A Spatially-Aware Multiple Instance Learning Framework for Digital Pathology. CoRR Hassan Keshvarikhojasteh, Mihail Tifrea, Sibylle Hess, Josien P. W. Pluim, Mitko Veta
2025	J	`jnl`	Adaptive Prototype Learning for Multimodal Cancer Survival Analysis. CoRR Hong Liu, Haosen Yang, Federica Eduati, Josien P. W. Pluim, Mitko Veta
2025	J	`jnl`	Deep learning motion correction of quantitative stress perfusion cardiovascular magnetic resonance. CoRR Noortje I. P. Schueler, Nathan C. K. Wong, Richard J. Crawley, Josien P. W. Pluim, Amedeo Chiribiri, Cian M. Scannell
2025	J	`jnl`	DeepMultiConnectome: Deep Multi-Task Prediction of Structural Connectomes Directly from Diffusion MRI Tractography. CoRR Marcus J. Vroemen, Yuqian Chen, Yui Lo, Tengfei Xue, Tom Weidong Cai, Fan Zhang, Josien P. W. Pluim, Lauren J. O'Donnell
2025	—	`conf`	Discriminating Distal Ischemic Stroke from Seizure-Induced Stroke Mimics Using Dynamic Susceptibility Contrast MRI. SWITCH@MICCAI Marijn Borghouts, Richard McKinley, Manuel Köstner, Josien P. W. Pluim, Roland Wiest, Ruisheng Su
2025	J	`jnl`	Enhancing reconstruction-based out-of-distribution detection in brain MRI with model and metric ensembles. Comput. Methods Programs Biomed. Evi M. C. Huijben, Sina Amirrajab, Josien P. W. Pluim
2025	J	`jnl`	Generative AI for synthetic data across multiple medical modalities: A systematic review of recent developments and challenges. Comput. Biol. Medicine Mahmoud K. Ibrahim, Yasmina Al Khalil, Sina Amirrajab, Chang Sun, Marcel Breeuwer, Josien P. W. Pluim, Bart Elen, Gökhan Ertaylan, Michel Dumontier
2025	—	`conf`	PathoPainter: Augmenting Histopathology Segmentation via Tumor-Aware Inpainting. MICCAI (16) Hong Liu, Haosen Yang, Evi M. C. Huijben, Mark Schuiveling, Ruisheng Su, Josien P. W. Pluim, Mitko Veta
2025	J	`jnl`	PathoPainter: Augmenting Histopathology Segmentation via Tumor-aware Inpainting. CoRR Hong Liu, Haosen Yang, Evi M. C. Huijben, Mark Schuiveling, Ruisheng Su, Josien P. W. Pluim, Mitko Veta
2025	J	`jnl`	Scaling up self-supervised learning for improved surgical foundation models. CoRR Tim J. M. Jaspers, Ronald L. P. D. de Jong, Yiping Li, Carolus H. J. Kusters, Franciscus H. A. Bakker, Romy C. van Jaarsveld, Gino M. Kuiper, Richard van Hillegersberg, Jelle P. Ruurda, Willem M. Brinkman, Josien P. W. Pluim, Peter H. N. de With, Marcel Breeuwer, Yasmina Al Khalil, Fons van der Sommen
2025	J	`jnl`	perfDSA: Automatic Perfusion Imaging in Cerebral Digital Subtraction Angiography. Int. J. Comput. Assist. Radiol. Surg. Ruisheng Su, P. Matthijs van der Sluijs, Flavius-Gabriel Marc, Frank te Nijenhuis, Sandra A. P. Cornelissen, Bob Roozenbeek, Wim H. van Zwam, Aad van der Lugt, Danny Ruijters, Josien P. W. Pluim, Theo van Walsum
2024	—	`conf`	Assessing the Robustness of Image Registration Models Under Domain Shifts with Learnable Input Images. WBIR Iris Kolenbrander, Vidya Prasad, Leanne Zikken, Maureen A. J. M. van Eijnatten, Matteo Maspero, Josien P. W. Pluim
2024	J	`jnl`	Brain MR image simulation for deep learning based medical image analysis networks. Comput. Methods Programs Biomed. Aymen Ayaz, Yasmina Al Khalil, Sina Amirrajab, Cristian Lorenz, Jürgen Weese, Josien P. W. Pluim, Marcel Breeuwer
2024	—	`conf`	Dataset Distribution Impacts Model Fairness: Single Vs. Multi-task Learning. FAIMI/EPIMI@MICCAI Ralf Raumanns, Gerard Schouten, Josien P. W. Pluim, Veronika Cheplygina
2024	J	`jnl`	Dataset Distribution Impacts Model Fairness: Single vs. Multi-Task Learning. CoRR Ralf Raumanns, Gerard Schouten, Josien P. W. Pluim, Veronika Cheplygina
2024	J	`jnl`	Effective deep-learning brain MRI super resolution using simulated training data. Comput. Biol. Medicine Aymen Ayaz, Rien Boonstoppel, Cristian Lorenz, Jürgen Weese, Josien P. W. Pluim, Marcel Breeuwer
2024	J	`jnl`	Enhancing Reconstruction-Based Out-of-Distribution Detection in Brain MRI with Model and Metric Ensembles. CoRR Evi M. C. Huijben, Sina Amirrajab, Josien P. W. Pluim
2024	J	`jnl`	Generative AI for Synthetic Data Across Multiple Medical Modalities: A Systematic Review of Recent Developments and Challenges. CoRR Mahmoud K. Ibrahim, Yasmina Al Khalil, Sina Amirrajab, Chang Sun, Marcel Breeuwer, Josien P. W. Pluim, Bart Elen, Gökhan Ertaylan, Michel Dumontier
2024	J	`jnl`	LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset. IEEE J. Biomed. Health Informatics Yiping Jiao, Jeroen van der Laak, Shadi Albarqouni, Zhang Li, Tao Tan, Abhir Bhalerao, Shenghua Cheng, Jiabo Ma, John Pocock, Josien P. W. Pluim, Navid Alemi Koohbanani, Raja Muhammad Saad Bashir, Shan-E-Ahmed Raza, Sibo Liu, Simon Graham, Suzanne C. Wetstein, Syed Ali Khurram, Xiuli Liu, Nasir M. Rajpoot, Mitko Veta, Francesco Ciompi
2024	—	`conf`	Multi-head Attention-based Deep Multiple Instance Learning. COMPAY@MICCAI Hassan Keshvarikhojasteh, Josien P. W. Pluim, Mitko Veta
2024	J	`jnl`	Multi-head Attention-based Deep Multiple Instance Learning. CoRR Hassan Keshvarikhojasteh, Josien P. W. Pluim, Mitko Veta
2024	J	`jnl`	Multi-modal brain tumor segmentation via conditional synthesis with Fourier domain adaptation. Comput. Medical Imaging Graph. Yasmina Al Khalil, Aymen Ayaz, Cristian Lorenz, Jürgen Weese, Josien P. W. Pluim, Marcel Breeuwer
2024	J	`jnl`	Multiple Instance Learning with random sampling for Whole Slide Image Classification. CoRR Hassan Keshvarikhojasteh, Josien P. W. Pluim, Mitko Veta
2024	—	`conf`	Self-Supervised Pretraining for Cardiovascular Magnetic Resonance Cine Segmentation. DEMI@MICCAI Rob A. J. de Mooij, Josien P. W. Pluim, Cian M. Scannell
2024	J	`jnl`	Self-supervised Pretraining for Cardiovascular Magnetic Resonance Cine Segmentation. CoRR Rob A. J. de Mooij, Josien P. W. Pluim, Cian M. Scannell
2024	—	`conf`	WSI-SAM: Multi-resolution Segment Anything Model (SAM) for histopathology whole-slide images. COMPAY@MICCAI Hong Liu, Haosen Yang, Paul J. van Diest, Josien P. W. Pluim, Mitko Veta
2024	J	`jnl`	WSI-SAM: Multi-resolution Segment Anything Model (SAM) for histopathology whole-slide images. CoRR Hong Liu, Haosen Yang, Paul J. van Diest, Josien P. W. Pluim, Mitko Veta
2023	J	`jnl`	A Framework for Simulating Cardiac MR Images With Varying Anatomy and Contrast. IEEE Trans. Medical Imaging Sina Amirrajab, Yasmina Al Khalil, Cristian Lorenz, Jürgen Weese, Josien P. W. Pluim, Marcel Breeuwer
2023	J	`jnl`	Effect of latent space distribution on the segmentation of images with multiple annotations. CoRR Ishaan Bhat, Josien P. W. Pluim, Max A. Viergever, Hugo J. Kuijf
2023	J	`jnl`	Histogram- and Diffusion-Based Medical Out-of-Distribution Detection. CoRR Evi M. C. Huijben, Sina Amirrajab, Josien P. W. Pluim
2023	J	`jnl`	LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset. CoRR Yiping Jiao, Jeroen van der Laak, Shadi Albarqouni, Zhang Li, Tao Tan, Abhir Bhalerao, Jiabo Ma, Jiamei Sun, Johnathon Pocock, Josien P. W. Pluim, Navid Alemi Koohbanani, Raja Muhammad Saad Bashir, Shan E Ahmed Raza, Sibo Liu, Simon Graham, Suzanne C. Wetstein, Syed Ali Khurram, Thomas Watson, Nasir M. Rajpoot, Mitko Veta, Francesco Ciompi
2023	J	`jnl`	On the usability of synthetic data for improving the robustness of deep learning-based segmentation of cardiac magnetic resonance images. Medical Image Anal. Yasmina Al Khalil, Sina Amirrajab, Cristian Lorenz, Jürgen Weese, Josien P. W. Pluim, Marcel Breeuwer
2023	J	`jnl`	Reducing segmentation failures in cardiac MRI via late feature fusion and GAN-based augmentation. Comput. Biol. Medicine Yasmina Al Khalil, Sina Amirrajab, Cristian Lorenz, Jürgen Weese, Josien P. W. Pluim, Marcel Breeuwer
2023	—	`conf`	The Importance of Realistic Training Deformations for Respiratory CT Registration. ISBI Iris Kolenbrander, Evi M. C. Huijben, Johanna N. A. Bergmans, Kim F. M. van Bussel, Josien P. W. Pluim, Maureen A. J. M. van Eijnatten
2022	—	`conf`	A Stratified Cascaded Approach for Brain Tumor Segmentation with the Aid of Multi-modal Synthetic Data. DALI@MICCAI Yasmina Al Khalil, Aymen Ayaz, Cristian Lorenz, Jürgen Weese, Josien P. W. Pluim, Marcel Breeuwer
2022	—	`conf`	An Image Feature Mapping Model for Continuous Longitudinal Data Completion and Generation of Synthetic Patient Trajectories. DGM4MICCAI@MICCAI Clément Chadebec, Evi M. C. Huijben, Josien P. W. Pluim, Stéphanie Allassonnière, Maureen A. J. M. van Eijnatten
2022	—	`conf`	Cardiac MR Image Segmentation and Quality Control in the Presence of Respiratory Motion Artifacts Using Simulated Data. STACOM@MICCAI Sina Amirrajab, Yasmina Al Khalil, Josien P. W. Pluim, Marcel Breeuwer, Cian M. Scannell
2022	—	`conf`	Generalized Probabilistic U-Net for Medical Image Segementation. UNSURE@MICCAI Ishaan Bhat, Josien P. W. Pluim, Hugo J. Kuijf
2022	J	`jnl`	Generalized Probabilistic U-Net for medical image segementation. CoRR Ishaan Bhat, Josien P. W. Pluim, Hugo J. Kuijf
2022	J	`jnl`	Influence of uncertainty estimation techniques on false-positive reduction in liver lesion detection. CoRR Ishaan Bhat, Josien P. W. Pluim, Max A. Viergever, Hugo J. Kuijf
2022	J	`jnl`	Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI. NeuroImage Chiara Maffei, Gabriel Girard, Kurt G. Schilling, Dogu Baran Aydogan, Nagesh Adluru, Andrey Zhylka, Ye Wu, Matteo Mancini, Andac Hamamci, Alessia Sarica, Achille Teillac, Steven H. Baete, Davood Karimi, Fang-Cheng Yeh, Mert E. Yildiz, Ali Gholipour, Yann Bihan-Poudec, Bassem Hiba, Andrea Quattrone, Aldo Quattrone, Tommy Boshkovski, Nikola Stikov, Pew-Thian Yap, Alberto De Luca, Josien P. W. Pluim, Alexander Leemans, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Bennett A. Landman, Erick Jorge Canales-Rodríguez, Muhamed Barakovic, Jonathan Rafael-Patino, Thomas Yu, Gaëtan Rensonnet, Simona Schiavi, Alessandro Daducci, Marco Pizzolato, Elda Fischi Gomez, Jean-Philippe Thiran, George Dai, Giorgia Grisot, Nikola Lazovski, Santi Puch, Marc Ramos, Paulo Rodrigues, Vesna Prckovska, Robert Jones, Julia Lehman, Suzanne N. Haber, Anastasia Yendiki
2022	J	`jnl`	Label-informed cardiac magnetic resonance image synthesis through conditional generative adversarial networks. Comput. Medical Imaging Graph. Sina Amirrajab, Yasmina Al Khalil, Cristian Lorenz, Jürgen Weese, Josien P. W. Pluim, Marcel Breeuwer
2022	J	`jnl`	PROMISSING: Pruning Missing Values in Neural Networks. CoRR Seyed Mostafa Kia, Nastaran Mohammadian Rad, Daniel van Opstal, Bart van Schie, Andre F. Marquand, Josien P. W. Pluim, Wiepke Cahn, Hugo G. Schnack
2022	J	`jnl`	Pathology Synthesis of 3D Consistent Cardiac MR Im-ages Using 2D VAEs and GANs. CoRR Sina Amirrajab, Cristian Lorenz, Jürgen Weese, Josien P. W. Pluim, Marcel Breeuwer
2022	—	`conf`	Pathology Synthesis of 3D Consistent Cardiac MR Images Using 2D VAEs and GANs. SASHIMI@MICCAI Sina Amirrajab, Cristian Lorenz, Jürgen Weese, Josien P. W. Pluim, Marcel Breeuwer
2022	J	`jnl`	sim2real: Cardiac MR Image Simulation-to-Real Translation via Unsupervised GANs. CoRR Sina Amirrajab, Yasmina Al Khalil, Cristian Lorenz, Jürgen Weese, Josien P. W. Pluim, Marcel Breeuwer
2021	J	`jnl`	Advanced Ultrasound and Photoacoustic Imaging in Cardiology. Sensors Min Wu, Navchetan Awasthi, Nastaran Mohammadian Rad, Josien P. W. Pluim, Richard G. P. Lopata
2021	J	`jnl`	Adversarial attack vulnerability of medical image analysis systems: Unexplored factors. Medical Image Anal. Gerda Bortsova, Cristina González-Gonzalo, Suzanne C. Wetstein, Florian Dubost, Ioannis Katramados, Laurens Hogeweg, Bart Liefers, Bram van Ginneken, Josien P. W. Pluim, Mitko Veta, Clara I. Sánchez, Marleen de Bruijne
2021	J	`jnl`	Corneal Pachymetry by AS-OCT after Descemet's Membrane Endothelial Keratoplasty. CoRR Friso G. Heslinga, Ruben T. Lucassen, Myrthe A. van den Berg, Luuk van der Hoek, Josien P. W. Pluim, Javier Cabrerizo, Mark Alberti, Mitko Veta
2021	J	`jnl`	Deep Learning Regression for Prostate Cancer Detection and Grading in Bi-Parametric MRI. IEEE Trans. Biomed. Eng. Coen de Vente, Pieter Vos, Matin Hosseinzadeh, Josien P. W. Pluim, Mitko Veta
2021	J	`jnl`	ENHANCE (ENriching Health data by ANnotations of Crowd and Experts): A case study for skin lesion classification. CoRR Ralf Raumanns, Gerard Schouten, Max Joosten, Josien P. W. Pluim, Veronika Cheplygina
2021	—	`conf`	Hybrid Deep Neural Network for Brachial Plexus Nerve Segmentation in Ultrasound Images. EUSIPCO Juul P. A. van Boxtel, Vincent R. J. Vousten, Josien P. W. Pluim, Nastaran Mohammadian Rad
2021	J	`jnl`	Hybrid Deep Neural Network for Brachial Plexus Nerve Segmentation in Ultrasound Images. CoRR Juul P. A. van Boxtel, Vincent R. J. Vousten, Josien P. W. Pluim, Nastaran Mohammadian Rad
2021	—	`conf`	Late Fusion U-Net with GAN-Based Augmentation for Generalizable Cardiac MRI Segmentation. STACOM@MICCAI Yasmina Al Khalil, Sina Amirrajab, Josien P. W. Pluim, Marcel Breeuwer
2021	—	`conf`	Radial U-Net: Improving DMEK Graft Detachment Segmentation in Radial AS-OCT Scans. OMIA@MICCAI Bram M. van der Velden, Mitko Veta, Josien P. W. Pluim, Mark Alberti, Friso G. Heslinga
2021	J	`jnl`	Roto-translation equivariant convolutional networks: Application to histopathology image analysis. Medical Image Anal. Maxime W. Lafarge, Erik J. Bekkers, Josien P. W. Pluim, Remco Duits, Mitko Veta
2021	—	`conf`	Using Uncertainty Estimation To Reduce False Positives In Liver Lesion Detection. ISBI Ishaan Bhat, Hugo J. Kuijf, Veronika Cheplygina, Josien P. W. Pluim
2021	J	`jnl`	Using uncertainty estimation to reduce false positives in liver lesion detection. CoRR Ishaan Bhat, Hugo J. Kuijf, Veronika Cheplygina, Josien P. W. Pluim
2021	A*	`conf`	clDice - A Novel Topology-Preserving Loss Function for Tubular Structure Segmentation. CVPR Suprosanna Shit, Johannes C. Paetzold, Anjany Sekuboyina, Ivan Ezhov, Alexander Unger, Andrey Zhylka, Josien P. W. Pluim, Ulrich Bauer, Bjoern H. Menze
2020	—	`conf`	4D Semantic Cardiac Magnetic Resonance Image Synthesis on XCAT Anatomical Model. MIDL Samaneh Abbasi-Sureshjani, Sina Amirrajab, Cristian Lorenz, Jürgen Weese, Josien P. W. Pluim, Marcel Breeuwer
2020	J	`jnl`	4D Semantic Cardiac Magnetic Resonance Image Synthesis on XCAT Anatomical Model. CoRR Samaneh Abbasi-Sureshjani, Sina Amirrajab, Cristian Lorenz, Jürgen Weese, Josien P. W. Pluim, Marcel Breeuwer
2020	J	`jnl`	Adversarial Attack Vulnerability of Medical Image Analysis Systems: Unexplored Factors. CoRR Suzanne C. Wetstein, Cristina González-Gonzalo, Gerda Bortsova, Bart Liefers, Florian Dubost, Ioannis Katramados, Laurens Hogeweg, Bram van Ginneken, Josien P. W. Pluim, Marleen de Bruijne, Clara I. Sánchez, Mitko Veta
2020	J	`jnl`	Deep Learning-Based Grading of Ductal Carcinoma In Situ in Breast Histopathology Images. CoRR Suzanne C. Wetstein, Nikolas Stathonikos, Josien P. W. Pluim, Yujing J. Heng, Natalie D. ter Hoeve, Celien P. H. Vreuls, Paul J. van Diest, Mitko Veta
2020	—	`conf`	Direct classification of type 2 diabetes from retinal fundus images in a population-based sample from the Maastricht study. Computer-Aided Diagnosis Friso G. Heslinga, Josien P. W. Pluim, A. J. H. M. Houben, Miranda T. Schram, Ronald M. A. Henry, Coen D. A. Stehouwer, Marleen J. van Greevenbroek, Tos T. J. M. Berendschot, Mitko Veta
2020	J	`jnl`	Orientation-Disentangled Unsupervised Representation Learning for Computational Pathology. CoRR Maxime W. Lafarge, Josien P. W. Pluim, Mitko Veta
2020	J	`jnl`	Primary Tumor Origin Classification of Lung Nodules in Spectral CT using Transfer Learning. CoRR Linde S. Hesse, Pim A. de Jong, Josien P. W. Pluim, Veronika Cheplygina
2020	J	`jnl`	Progressively Trained Convolutional Neural Networks for Deformable Image Registration. IEEE Trans. Medical Imaging Koen A. J. Eppenhof, Maxime W. Lafarge, Mitko Veta, Josien P. W. Pluim
2020	J	`jnl`	Quantifying Graft Detachment after Descemet's Membrane Endothelial Keratoplasty with Deep Convolutional Neural Networks. CoRR Friso G. Heslinga, Mark Alberti, Josien P. W. Pluim, Javier Cabrerizo, Mitko Veta
2020	J	`jnl`	Roto-Translation Equivariant Convolutional Networks: Application to Histopathology Image Analysis. CoRR Maxime W. Lafarge, Erik J. Bekkers, Josien P. W. Pluim, Remco Duits, Mitko Veta
2020	—	`conf`	Segmentation and Classification of Melanoma and Nevus in Whole Slide Images. ISBI Mike van Zon, Nikolas Stathonikos, Willeke A. M. Blokx, Selim Komina, Sybren L. N. Maas, Josien P. W. Pluim, Paul J. van Diest, Mitko Veta
2020	—	`conf`	XCAT-GAN for Synthesizing 3D Consistent Labeled Cardiac MR Images on Anatomically Variable XCAT Phantoms. MICCAI (4) Sina Amirrajab, Samaneh Abbasi-Sureshjani, Yasmina Al Khalil, Cristian Lorenz, Jürgen Weese, Josien P. W. Pluim, Marcel Breeuwer
2020	J	`jnl`	XCAT-GAN for Synthesizing 3D Consistent Labeled Cardiac MR Images on Anatomically Variable XCAT Phantoms. CoRR Sina Amirrajab, Samaneh Abbasi-Sureshjani, Yasmina Al Khalil, Cristian Lorenz, Jürgen Weese, Josien P. W. Pluim, Marcel Breeuwer
2020	J	`jnl`	clDice - a Topology-Preserving Loss Function for Tubular Structure Segmentation. CoRR Suprosanna Shit, Johannes C. Paetzold, Anjany Sekuboyina, Andrey Zhylka, Ivan Ezhov, Alexander Unger, Josien P. W. Pluim, Giles Tetteh, Bjoern H. Menze
2019	B	`conf`	Approximation of a pipeline of unsupervised retina image analysis methods with a CNN. Image Processing Friso G. Heslinga, Josien P. W. Pluim, Behdad Dashtbozorg, Tos T. J. M. Berendschot, A. J. H. M. Houben, Ronald M. A. Henry, Mitko Veta
2019	J	`jnl`	Benchmark on Automatic Six-Month-Old Infant Brain Segmentation Algorithms: The iSeg-2017 Challenge. IEEE Trans. Medical Imaging Li Wang, Dong Nie, Guannan Li, Élodie Puybareau, Jose Dolz, Qian Zhang, Fan Wang, Jing Xia, Zhengwang Wu, Jiawei Chen, Kim-Han Thung, Toan Duc Bui, Jitae Shin, Guodong Zeng, Guoyan Zheng, Vladimir S. Fonov, Andrew Doyle, Yongchao Xu, Pim Moeskops, Josien P. W. Pluim, Christian Desrosiers, Ismail Ben Ayed, Gerard Sanroma, Oualid M. Benkarim, Adrià Casamitjana, Verónica Vilaplana, Weili Lin, Gang Li, Dinggang Shen
2019	—	`conf`	Capturing Single-Cell Phenotypic Variation via Unsupervised Representation Learning. MIDL Maxime W. Lafarge, Juan C. Caicedo, Anne E. Carpenter, Josien P. W. Pluim, Shantanu Singh, Mitko Veta
2019	—	`conf`	Convolutional Neural Network-Based Regression for Quantification of Brain Characteristics Using MRI. WorldCIST (2) João Fernandes, Victor Alves, Nadieh Khalili, Manon J. N. L. Benders, Ivana Isgum, Josien P. W. Pluim, Pim Moeskops
2019	J	`jnl`	Deep learning assessment of breast terminal duct lobular unit involution: towards automated prediction of breast cancer risk. CoRR Suzanne C. Wetstein, Allison M. Onken, Christina Luffman, Gabrielle M. Baker, Michael E. Pyle, Kevin H. Kensler, Ying Liu, Bart Bakker, Ruud Vlutters, Marinus B. van Leeuwen, Laura C. Collins, Stuart J. Schnitt, Josien P. W. Pluim, Rulla M. Tamimi, Yujing J. Heng, Mitko Veta
2019	—	`conf`	Detection of acini in histopathology slides: towards automated prediction of breast cancer risk. Digital Pathology Suzanne C. Wetstein, Allison M. Onken, Gabrielle M. Baker, Michael E. Pyle, Josien P. W. Pluim, Rulla M. Tamimi, Yujing J. Heng, Mitko Veta
2019	J	`jnl`	Direct Classification of Type 2 Diabetes From Retinal Fundus Images in a Population-based Sample From The Maastricht Study. CoRR Friso G. Heslinga, Josien P. W. Pluim, A. J. H. M. Houben, Miranda T. Schram, Ronald M. A. Henry, Coen D. A. Stehouwer, Marleen J. van Greevenbroek, Tos T. J. M. Berendschot, Mitko Veta
2019	J	`jnl`	Liver segmentation and metastases detection in MR images using convolutional neural networks. CoRR Mariëlle J. A. Jansen, Hugo J. Kuijf, Maarten Niekel, Wouter B. Veldhuis, Frank J. Wessels, Max A. Viergever, Josien P. W. Pluim
2019	J	`jnl`	Motion correction of dynamic contrast enhanced MRI of the liver. CoRR Mariëlle J. A. Jansen, Wouter B. Veldhuis, Maarten S. van Leeuwen, Josien P. W. Pluim
2019	J	`jnl`	Not-so-supervised: A survey of semi-supervised, multi-instance, and transfer learning in medical image analysis. Medical Image Anal. Veronika Cheplygina, Marleen de Bruijne, Josien P. W. Pluim
2019	B	`conf`	Optimal input configuration of dynamic contrast enhanced MRI in convolutional neural networks for liver segmentation. Image Processing Mariëlle J. A. Jansen, Hugo J. Kuijf, Josien P. W. Pluim
2019	J	`jnl`	Optimal input configuration of dynamic contrast enhanced MRI in convolutional neural networks for liver segmentation. CoRR Mariëlle J. A. Jansen, Hugo J. Kuijf, Josien P. W. Pluim
2019	J	`jnl`	Predicting breast tumor proliferation from whole-slide images: The TUPAC16 challenge. Medical Image Anal. Mitko Veta, Yujing J. Heng, Nikolas Stathonikos, Babak Ehteshami Bejnordi, Francisco Beca, Thomas Wollmann, Karl Rohr, Manan A. Shah, Dayong Wang, Mikaël Rousson, Martin Hedlund, David Tellez, Francesco Ciompi, Erwan Zerhouni, David Lanyi, Matheus Palhares Viana, Vassili Kovalev, Vitali Liauchuk, Josien P. W. Pluim
2019	B	`conf`	Progressively growing convolutional networks for end-to-end deformable image registration. Image Processing Koen A. J. Eppenhof, Maxime W. Lafarge, Josien P. W. Pluim
2019	J	`jnl`	Pulmonary CT Registration Through Supervised Learning With Convolutional Neural Networks. IEEE Trans. Medical Imaging Koen A. J. Eppenhof, Josien P. W. Pluim
2018	—	`conf`	Automatic classification of focal liver lesions based on clinical DCE-MR and T2-weighted images: A feasibility study. ISBI Mariëlle J. A. Jansen, Hugo J. Kuijf, Josien P. W. Pluim
2018	—	`conf`	Convolutional Neural Networks for Segmentation of the Left Atrium from Gadolinium-Enhancement MRI Images. STACOM@MICCAI Coen de Vente, Mitko Veta, Orod Razeghi, Steven A. Niederer, Josien P. W. Pluim, Kawal S. Rhode, Rashed Karim
2018	—	`conf`	Crowd Disagreement About Medical Images Is Informative. CVII-STENT/LABELS@MICCAI Veronika Cheplygina, Josien P. W. Pluim
2018	J	`jnl`	Crowd disagreement of medical images is informative. CoRR Veronika Cheplygina, Josien P. W. Pluim
2018	B	`conf`	Deformable image registration using convolutional neural networks. Image Processing Koen A. J. Eppenhof, Maxime W. Lafarge, Pim Moeskops, Mitko Veta, Josien P. W. Pluim
2018	J	`jnl`	Inferring a Third Spatial Dimension from 2D Histological Images. CoRR Maxime W. Lafarge, Josien P. W. Pluim, Koen A. J. Eppenhof, Pim Moeskops, Mitko Veta
2018	—	`conf`	Inferring a third spatial dimension from 2D histological images. ISBI Maxime W. Lafarge, Josien P. W. Pluim, Koen A. J. Eppenhof, Pim Moeskops, Mitko Veta
2018	J	`jnl`	Not-so-supervised: a survey of semi-supervised, multi-instance, and transfer learning in medical image analysis. CoRR Veronika Cheplygina, Marleen de Bruijne, Josien P. W. Pluim
2018	J	`jnl`	Predicting breast tumor proliferation from whole-slide images: the TUPAC16 challenge. CoRR Mitko Veta, Yujing J. Heng, Nikolas Stathonikos, Babak Ehteshami Bejnordi, Francisco Beca, Thomas Wollmann, Karl Rohr, Manan A. Shah, Dayong Wang, Mikaël Rousson, Martin Hedlund, David Tellez, Francesco Ciompi, Erwan Zerhouni, David Lanyi, Matheus Palhares Viana, Vassili Kovalev, Vitali Liauchuk, Hady Ahmady Phoulady, Talha Qaiser, Simon Graham, Nasir M. Rajpoot, Erik Sjöblom, Jesper Molin, Kyunghyun Paeng, Sangheum Hwang, Sunggyun Park, Zhipeng Jia, Eric I-Chao Chang, Yan Xu, Andrew H. Beck, Paul J. van Diest, Josien P. W. Pluim
2018	J	`jnl`	Reconnection of Interrupted Curvilinear Structures via Cortically Inspired Completion for Ophthalmologic Images. IEEE Trans. Biomed. Eng. Jiong Zhang, Erik J. Bekkers, Da Chen, Tos T. J. M. Berendschot, Jan Schouten, Josien P. W. Pluim, Yonggang Shi, Behdad Dashtbozorg, Bart M. ter Haar Romeny
2018	—	`conf`	Roto-Translation Covariant Convolutional Networks for Medical Image Analysis. MICCAI (1) Erik J. Bekkers, Maxime W. Lafarge, Mitko Veta, Koen A. J. Eppenhof, Josien P. W. Pluim, Remco Duits
2018	J	`jnl`	Roto-Translation Covariant Convolutional Networks for Medical Image Analysis. CoRR Erik J. Bekkers, Maxime W. Lafarge, Mitko Veta, Koen A. J. Eppenhof, Josien P. W. Pluim, Remco Duits
2017	—	`conf`	Adversarial Training and Dilated Convolutions for Brain MRI Segmentation. DLMIA/ML-CDS@MICCAI Pim Moeskops, Mitko Veta, Maxime W. Lafarge, Koen A. J. Eppenhof, Josien P. W. Pluim
2017	J	`jnl`	Adversarial training and dilated convolutions for brain MRI segmentation. CoRR Pim Moeskops, Mitko Veta, Maxime W. Lafarge, Koen A. J. Eppenhof, Josien P. W. Pluim
2017	—	`conf`	Automatic Segmentation of the Intracranial Volume in Fetal MR Images. FIFI/OMIA@MICCAI Nadieh Khalili, Pim Moeskops, Nathalie H. P. Claessens, S. Scherpenzeel, Elise Turk, R. de Heus, Manon J. N. L. Benders, Max A. Viergever, Josien P. W. Pluim, Ivana Isgum
2017	J	`jnl`	Automatic segmentation of the intracranialvolume in fetal MR images. CoRR Nadieh Khalili, Pim Moeskops, Nathalie H. P. Claessens, S. Scherpenzeel, Elise Turk, R. de Heus, Manon J. N. L. Benders, Max A. Viergever, Josien P. W. Pluim, Ivana Isgum
2017	—	`conf`	Domain-Adversarial Neural Networks to Address the Appearance Variability of Histopathology Images. DLMIA/ML-CDS@MICCAI Maxime W. Lafarge, Josien P. W. Pluim, Koen A. J. Eppenhof, Pim Moeskops, Mitko Veta
2017	J	`jnl`	Domain-adversarial neural networks to address the appearance variability of histopathology images. CoRR Maxime W. Lafarge, Josien P. W. Pluim, Koen A. J. Eppenhof, Pim Moeskops, Mitko Veta
2017	—	`conf`	Exploring the Similarity of Medical Imaging Classification Problems. CVII-STENT/LABELS@MICCAI Veronika Cheplygina, Pim Moeskops, Mitko Veta, Behdad Dashtbozorg, Josien P. W. Pluim
2017	J	`jnl`	Exploring the similarity of medical imaging classification problems. CoRR Veronika Cheplygina, Pim Moeskops, Mitko Veta, Behdad Dasht Bozorg, Josien P. W. Pluim
2017	J	`jnl`	Gland segmentation in colon histology images: The glas challenge contest. Medical Image Anal. Korsuk Sirinukunwattana, Josien P. W. Pluim, Hao Chen, Xiaojuan Qi, Pheng-Ann Heng, Yun Bo Guo, Li Yang Wang, Bogdan J. Matuszewski, Elia Bruni, Urko Sanchez, Anton Böhm, Olaf Ronneberger, Bassem Ben Cheikh, Daniel Racoceanu, Philipp Kainz, Michael Pfeiffer, Martin Urschler, David R. J. Snead, Nasir M. Rajpoot
2017	J	`jnl`	Isointense infant brain MRI segmentation with a dilated convolutional neural network. CoRR Pim Moeskops, Josien P. W. Pluim
2017	B	`conf`	Motion correction of dynamic contrast enhanced MRI of the liver. Image Processing Mariëlle J. A. Jansen, Wouter B. Veldhuis, Maarten S. van Leeuwen, Josien P. W. Pluim
2017	B	`conf`	Supervised local error estimation for nonlinear image registration using convolutional neural networks. Image Processing Koen A. J. Eppenhof, Josien P. W. Pluim
2016	J	`jnl`	A survey of medical image registration - under review. Medical Image Anal. Max A. Viergever, J. B. Antoine Maintz, Stefan Klein, Keelin Murphy, Marius Staring, Josien P. W. Pluim
2016	—	`conf`	Cutting Out the Middleman: Measuring Nuclear Area in Histopathology Slides Without Segmentation. MICCAI (2) Mitko Veta, Paul J. van Diest, Josien P. W. Pluim
2016	J	`jnl`	Cutting out the middleman: measuring nuclear area in histopathology slides without segmentation. CoRR Mitko Veta, Paul J. van Diest, Josien P. W. Pluim
2016	J	`jnl`	Gland Segmentation in Colon Histology Images: The GlaS Challenge Contest. CoRR Korsuk Sirinukunwattana, Josien P. W. Pluim, Hao Chen, Xiaojuan Qi, Pheng-Ann Heng, Yun Bo Guo, Li Yang Wang, Bogdan J. Matuszewski, Elia Bruni, Urko Sanchez, Anton Böhm, Olaf Ronneberger, Bassem Ben Cheikh, Daniel Racoceanu, Philipp Kainz, Michael Pfeiffer, Martin Urschler, David R. J. Snead, Nasir M. Rajpoot
2016	J	`jnl`	Robust Retinal Vessel Segmentation via Locally Adaptive Derivative Frames in Orientation Scores. IEEE Trans. Medical Imaging Jiong Zhang, Behdad Dashtbozorg, Erik J. Bekkers, Josien P. W. Pluim, Remco Duits, Bart M. ter Haar Romeny
2016	B	`conf`	The truth is hard to make: Validation of medical image registration. ICPR Josien P. W. Pluim, Sascha E. A. Muenzing, Koen A. J. Eppenhof, Keelin Murphy
2015	J	`jnl`	Assessment of algorithms for mitosis detection in breast cancer histopathology images. Medical Image Anal. Mitko Veta, Paul J. van Diest, Stefan M. Willems, Haibo Wang, Anant Madabhushi, Angel Cruz-Roa, Fabio A. González, Anders Boesen Lindbo Larsen, Jacob S. Vestergaard, Anders B. Dahl, Dan C. Ciresan, Jürgen Schmidhuber, Alessandro Giusti, Luca Maria Gambardella, Faik Boray Tek, Thomas Walter, Ching-Wei Wang, Satoshi Kondo, Bogdan J. Matuszewski, Frédéric Precioso, Violet Snell, Josef Kittler, Teófilo Emídio de Campos, Adnan Mujahid Khan, Nasir M. Rajpoot, Evdokia Arkoumani, Miangela M. Lacle, Max A. Viergever, Josien P. W. Pluim
2015	J	`jnl`	Improving label fusion in multi-atlas based segmentation by locally combining atlas selection and performance estimation. Comput. Vis. Image Underst. Thomas R. Langerak, Uulke A. van der Heide, Alexis N. T. J. Kotte, Floris F. Berendsen, Josien P. W. Pluim
2014	J	`jnl`	Assessment of algorithms for mitosis detection in breast cancer histopathology images. CoRR Mitko Veta, Paul J. van Diest, Stefan M. Willems, Haibo Wang, Anant Madabhushi, Angel Cruz-Roa, Fabio A. González, Anders Boesen Lindbo Larsen, Jacob S. Vestergaard, Anders B. Dahl, Dan C. Ciresan, Jürgen Schmidhuber, Alessandro Giusti, Luca Maria Gambardella, Faik Boray Tek, Thomas Walter, Ching-Wei Wang, Satoshi Kondo, Bogdan J. Matuszewski, Frédéric Precioso, Violet Snell, Josef Kittler, Teófilo Emídio de Campos, Adnan Mujahid Khan, Nasir M. Rajpoot, Evdokia Arkoumani, Miangela M. Lacle, Max A. Viergever, Josien P. W. Pluim
2014	J	`jnl`	Breast Cancer Histopathology Image Analysis: A Review. IEEE Trans. Biomed. Eng. Mitko Veta, Josien P. W. Pluim, Paul J. van Diest, Max A. Viergever
2014	J	`jnl`	Corrections to "Breast Cancer Histopathology Image Analysis: A Review". IEEE Trans. Biomed. Eng. Mitko Veta, Josien P. W. Pluim, Paul J. van Diest, Max A. Viergever
2014	J	`jnl`	DIRBoost-An algorithm for boosting deformable image registration: Application to lung CT intra-subject registration. Medical Image Anal. Sascha E. A. Muenzing, Bram van Ginneken, Max A. Viergever, Josien P. W. Pluim
2014	—	`conf`	Fast Multiatlas Selection Using Composition of Transformations for Radiation Therapy Planning. MCV David Rivest-Hénault, Soumya Ghose, Josien P. W. Pluim, Peter B. Greer, Jurgen Fripp, Jason A. Dowling
2014	—	`conf`	Image Registration. Bildverarbeitung für die Medizin Josien P. W. Pluim
2014	B	`conf`	Registration of organs with sliding interfaces and changing topologies. Image Processing Floris F. Berendsen, Alexis N. T. J. Kotte, Max A. Viergever, Josien P. W. Pluim
2013	—	`conf`	A patient specific 4D MRI liver motion model based on sparse imaging and registration. Image-Guided Procedures Yolanda H. Noorda, Lambertus W. Bartels, Marijn van Stralen, Josien P. W. Pluim
2013	—	`conf`	Detecting mitotic figures in breast cancer histopathology images. Digital Pathology Mitko Veta, Paul J. van Diest, Josien P. W. Pluim
2013	J	`jnl`	Expert-driven label fusion in multi-atlas-based segmentation of the prostate using weighted atlases. Int. J. Comput. Assist. Radiol. Surg. Thomas R. Langerak, Uulke A. van der Heide, Alexis N. T. J. Kotte, Floris F. Berendsen, Marco van Vulpen, Josien P. W. Pluim
2013	—	`conf`	Free-Form Registration Involving Disappearing Structures: Application to Brachytherapy MRI. Abdominal Imaging Floris F. Berendsen, Alexis N. T. J. Kotte, Astrid A. C. de Leeuw, Max A. Viergever, Josien P. W. Pluim
2013	J	`jnl`	Free-form image registration regularized by a statistical shape model: application to organ segmentation in cervical MR. Comput. Vis. Image Underst. Floris F. Berendsen, Uulke A. van der Heide, Thomas R. Langerak, Alexis N. T. J. Kotte, Josien P. W. Pluim
2013	—	`conf`	Implicit surface registration with surface-oriented anisotropic deformation field smoothing. ISBI Paul C. Pearlman, Ivana Isgum, Karina J. Kersbergen, Manon J. N. L. Benders, Max A. Viergever, Josien P. W. Pluim
2013	—	`conf`	Rib Detection in 3D MRI Using Dynamic Programming Based on Vesselness and Ridgeness. Abdominal Imaging Yolanda H. Noorda, Lambertus W. Bartels, Max A. Viergever, Josien P. W. Pluim
2013	—	`conf`	Segmentation of 3D Transesophageal Echocardiograms by Multi-cavity Active Shape Model and Gamma Mixture Model. AE-CAI Alexander Haak, Gonzalo Vegas-Sánchez-Ferrero, Harriët H. Mulder, Hortense A. Kirisli, Nora Baka, Coert Metz, Stefan Klein, Ben Ren, Gerard van Burken, Anton F. W. van der Steen, Josien P. W. Pluim, Theo van Walsum, Johan G. Bosch
2013	—	`conf`	Simultaneous pairwise registration for image mosaicing of TEE data. ISBI Harriët Wilhelmina Mulder, Marijn van Stralen, Claire Ren, Floris F. Berendsen, Johan G. Bosch, Josien P. W. Pluim
2012	—	`conf`	DIRBoost: An algorithm for boosting deformable image registration. ISBI Sascha E. A. Muenzing, Bram van Ginneken, Josien P. W. Pluim
2012	—	`conf`	Elastic Demons: Characterizing Cortical Development in Neonates Using an Implicit Surface Registration. STIA Paul C. Pearlman, Ivana Isgum, Karina J. Kersbergen, Manon J. N. L. Benders, Max A. Viergever, Josien P. W. Pluim
2012	—	`conf`	On Combining Algorithms for Deformable Image Registration. WBIR Sascha E. A. Muenzing, Bram van Ginneken, Josien P. W. Pluim
2012	J	`jnl`	Patient Specific Prostate Segmentation in 3-D Magnetic Resonance Images. IEEE Trans. Medical Imaging Shekhar S. Chandra, Jason Dowling, Kai-Kai Shen, Parnesh Raniga, Josien P. W. Pluim, Peter B. Greer, Olivier Salvado, Jurgen Fripp
2012	—	`conf`	Segmentation of the Cartilage in the Rib Cage in 3D MRI. Abdominal Imaging Yolanda H. Noorda, Lambertus W. Bartels, Josien P. W. Pluim
2012	J	`jnl`	Supervised quality assessment of medical image registration: Application to intra-patient CT lung registration. Medical Image Anal. Sascha E. A. Muenzing, Bram van Ginneken, Keelin Murphy, Josien P. W. Pluim
2011	Misc	`conf`	Automatic Segmentation of the Prostate in 3D Magnetic Resonance Images Using Case Specific Deformable Models. DICTA Shekhar Chandra, Jason Dowling, Kai-Kai Shen, Josien P. W. Pluim, Peter B. Greer, Olivier Salvado, Jurgen Fripp
2011	J	`jnl`	Editorial. Medical Image Anal. Max A. Viergever, Tianzi Jiang, Nassir Navab, Josien P. W. Pluim
2011	B	`conf`	Evaluating and improving label fusion in atlas-based segmentation using the surface distance. Image Processing Thomas R. Langerak, Uulke A. van der Heide, Alexis N. T. J. Kotte, Floris F. Berendsen, Josien P. W. Pluim
2011	J	`jnl`	Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. IEEE Trans. Medical Imaging Keelin Murphy, Bram van Ginneken, Joseph M. Reinhardt, Sven Kabus, Kai Ding, Xiang Deng, Kunlin Cao, Kaifang Du, Gary E. Christensen, Vincent Garcia, Tom Vercauteren, Nicholas Ayache, Olivier Commowick, Grégoire Malandain, Ben Glocker, Nikos Paragios, Nassir Navab, Vladlena Gorbunova, Jon Sporring, Marleen de Bruijne, Xiao Han, Mattias P. Heinrich, Julia A. Schnabel, Mark Jenkinson, Cristian Lorenz, Marc Modat, Jamie McClelland, Sébastien Ourselin, Sascha E. A. Muenzing, Max A. Viergever, Dante De Nigris, D. Louis Collins, Tal Arbel, Marta Peroni, Rui Li, Gregory C. Sharp, Alexander Schmidt-Richberg, Jan Ehrhardt, René Werner, Dirk Smeets, Dirk Loeckx, Gang Song, Nicholas J. Tustison, Brian B. Avants, James C. Gee, Marius Staring, Stefan Klein, Berend C. Stoel, Martin Urschler, Manuel Werlberger, Jef Vandemeulebroucke, Simon Rit, David Sarrut, Josien P. W. Pluim
2011	B	`conf`	Evaluation of optimization methods for intensity-based 2D-3D registration in x-ray guided interventions. Image Processing I. M. J. van der Bom, Stefan Klein, Marius Staring, R. Homan, Lambertus W. Bartels, Josien P. W. Pluim
2011	—	`conf`	Fast Automatic Multi-atlas Segmentation of the Prostate from 3D MR Images. Prostate Cancer Imaging Jason Dowling, Jurgen Fripp, Shekhar Chandra, Josien P. W. Pluim, Jonathan Lambert, Joel Parker, James Denham, Peter B. Greer, Olivier Salvado
2011	—	`conf`	Intra-temporal facial nerve centerline segmentation for navigated temporal bone surgery. Image-Guided Procedures Eduard H. J. Voormolen, Marijn van Stralen, Peter A. Woerdeman, Josien P. W. Pluim, Herke Jan Noordmans, Luca Regli, Jan Willem Berkelbach van der Sprenkel, Max A. Viergever
2011	—	`conf`	Label fusion in multi-atlas based segmentation with user-defined local weights. ISBI Robin Langerak, Uulke A. van der Heide, Alexis N. T. J. Kotte, Floris F. Berendsen, Josien P. W. Pluim
2011	—	`conf`	Local atlas selection and performance estimation in multi-atlas based segmentation. ISBI Robin Langerak, Uulke A. van der Heide, Alexis N. T. J. Kotte, Floris F. Berendsen, Josien P. W. Pluim
2011	—	`conf`	Marker-controlled watershed segmentation of nuclei in H&E stained breast cancer biopsy images. ISBI Mitko Veta, A. Huisman, Max A. Viergever, Paul J. van Diest, Josien P. W. Pluim
2011	—	`conf`	Preconditioned Stochastic Gradient Descent Optimisation for Monomodal Image Registration. MICCAI (2) Stefan Klein, Marius Staring, Patrik Andersson, Josien P. W. Pluim
2011	—	`conf`	Registration of multi-view 3D echocardiography images. MIUA Harriët Wilhelmina Mulder, Marijn van Stralen, Heleen B. van der Zwaan, K. Y. Esther Leung, Johan G. Bosch, Josien P. W. Pluim
2011	B	`conf`	Registration of multi-view apical 3D echocardiography images. Image Processing Harriët H. Mulder, Marijn van Stralen, Heleen B. van der Zwaan, K. Y. Esther Leung, Johan G. Bosch, Josien P. W. Pluim
2011	—	`conf`	Segmentation of Cervical Images by Inter-subject Registration with a Statistical Organ Model. Abdominal Imaging Floris F. Berendsen, Uulke A. van der Heide, Thomas R. Langerak, Alexis N. T. J. Kotte, Josien P. W. Pluim
2011	J	`jnl`	Semi-automatic construction of reference standards for evaluation of image registration. Medical Image Anal. Keelin Murphy, Bram van Ginneken, Stefan Klein, Marius Staring, Bartjan de Hoop, Max A. Viergever, Josien P. W. Pluim
2011	B	`conf`	Supervised segmentation methods for the hippocampus in MR images. Image Processing Marijn van Stralen, Mirjam I. Geerlings, Koen L. Vincken, Josien P. W. Pluim
2010	J	`jnl`	Adaptive local multi-atlas segmentation: Application to the heart and the caudate nucleus. Medical Image Anal. Eva M. van Rikxoort, Ivana Isgum, Yulia Arzhaeva, Marius Staring, Stefan Klein, Max A. Viergever, Josien P. W. Pluim, Bram van Ginneken
2010	J	`jnl`	Automatic Segmentation of Pulmonary Lobes Robust Against Incomplete Fissures. IEEE Trans. Medical Imaging Eva M. van Rikxoort, Mathias Prokop, Bartjan de Hoop, Max A. Viergever, Josien P. W. Pluim, Bram van Ginneken
2010	B	`conf`	Automatic estimation of registration parameters: image similarity and regularization. Image Processing Thomas R. Langerak, Uulke A. van der Heide, Alexis N. T. J. Kotte, Josien P. W. Pluim
2010	J	`jnl`	Label Fusion in Atlas-Based Segmentation Using a Selective and Iterative Method for Performance Level Estimation (SIMPLE). IEEE Trans. Medical Imaging Robin Langerak, Uulke A. van der Heide, Alexis N. T. J. Kotte, Max A. Viergever, Marco van Vulpen, Josien P. W. Pluim
2010	—	`ed.`	Medical Image Computing and Computer-Assisted Intervention - MICCAI 2010, 13th International Conference, Beijing, China, September 20-24, 2010, Proceedings, Part I MICCAI (1) Tianzi Jiang, Nassir Navab, Josien P. W. Pluim, Max A. Viergever
2010	—	`ed.`	Medical Image Computing and Computer-Assisted Intervention - MICCAI 2010, 13th International Conference, Beijing, China, September 20-24, 2010, Proceedings, Part II MICCAI (2) Tianzi Jiang, Nassir Navab, Josien P. W. Pluim, Max A. Viergever
2010	—	`ed.`	Medical Image Computing and Computer-Assisted Intervention - MICCAI 2010, 13th International Conference, Beijing, China, September 20-24, 2010, Proceedings, Part III MICCAI (3) Tianzi Jiang, Nassir Navab, Josien P. W. Pluim, Max A. Viergever
2010	J	`jnl`	elastix: A Toolbox for Intensity-Based Medical Image Registration. IEEE Trans. Medical Imaging Stefan Klein, Marius Staring, Keelin Murphy, Max A. Viergever, Josien P. W. Pluim
2009	J	`jnl`	Adaptive Stochastic Gradient Descent Optimisation for Image Registration. Int. J. Comput. Vis. Stefan Klein, Josien P. W. Pluim, Marius Staring, Max A. Viergever
2009	—	`conf`	Automatic Segmentation of the Pulmonary Lobes from Fissures, Airways, and Lung Borders: Evaluation of Robustness against Missing Data. MICCAI (1) Eva M. van Rikxoort, Mathias Prokop, Bartjan de Hoop, Max A. Viergever, Josien P. W. Pluim, Bram van Ginneken
2009	B	`conf`	Automatic detection of registration errors for quality assessment in medical image registration. Image Processing Sascha E. A. Muenzing, Keelin Murphy, Bram van Ginneken, Josien P. W. Pluim
2009	—	`conf`	Evaluation of 4D-CT Lung Registration. MICCAI (1) Sven Kabus, Tobias Klinder, Keelin Murphy, Bram van Ginneken, Cristian Lorenz, Josien P. W. Pluim
2009	—	`conf`	Label Fusion Using Performance Estimation with Iterative Label Selection. ISBI Robin Langerak, Uulke A. van der Heide, Irene Lips, Alexis N. T. J. Kotte, Marco van Vulpen, Josien P. W. Pluim
2009	B	`ed.`	Medical Imaging 2009: Image Processing, Lake Buena Vista (Orlando Area), Florida, United States, 7-12 February 2009 Image Processing Josien P. W. Pluim, Benoit M. Dawant
2009	—	`conf`	Optimal Discrete Multi-Resolution Deformable Image Registration. ISBI Marijn van Stralen, Josien P. W. Pluim
2009	J	`jnl`	Registration of Cervical MRI Using Multifeature Mutual Information. IEEE Trans. Medical Imaging Marius Staring, Uulke A. van der Heide, Stefan Klein, Max A. Viergever, Josien P. W. Pluim
2008	A*	`conf`	Enforcing stochastic inverse consistency in non-rigid image registration and matching. CVPR Sai Kit Yeung, Chi-Keung Tang, Pengcheng Shi, Josien P. W. Pluim, Max A. Viergever, Albert C. S. Chung, Helen C. Shen
2008	B	`ed.`	Medical Imaging 2008: Image Processing, San Diego, California, United States, 16-21 February 2008 Image Processing Joseph M. Reinhardt, Josien P. W. Pluim
2008	—	`conf`	Semi-automatic Reference Standard Construction for Quantitative Evaluation of Lung CT Registration. MICCAI (2) Keelin Murphy, Bram van Ginneken, Josien P. W. Pluim, Stefan Klein, Marius Staring
2008	J	`jnl`	The Third International Workshop on Biomedical Image Registration - WBIR 2006. Medical Image Anal. Bostjan Likar, Josien P. W. Pluim
2007	J	`jnl`	Evaluation of Optimization Methods for Nonrigid Medical Image Registration Using Mutual Information and B-Splines. IEEE Trans. Image Process. Stefan Klein, Marius Staring, Josien P. W. Pluim
2007	B	`ed.`	Medical Imaging 2007: Image Processing, San Diego, CA, United States, 17-22 February 2007 Image Processing Josien P. W. Pluim, Joseph M. Reinhardt
2007	B	`conf`	Projection-slice theorem based 2D-3D registration. Image Processing I. M. J. van der Bom, Josien P. W. Pluim, R. Homan, J. Timmer, Lambertus W. Bartels
2007	—	`conf`	Segmentation of the Prostate in MR Images by Atlas Matching. ISBI Stefan Klein, Uulke A. van der Heide, Bas W. Raaymakers, Alexis N. T. J. Kotte, Marius Staring, Josien P. W. Pluim
2006	—	`conf`	A Comparison of Acceleration Techniques for Nonrigid Medical Image Registration. WBIR Stefan Klein, Marius Staring, Josien P. W. Pluim
2006	—	`ed.`	Biomedical Image Registration, Third International Workshop, WBIR 2006, Utrecht, The Netherlands, July 9-11, 2006, Proceedings WBIR Josien P. W. Pluim, Bostjan Likar, Frans A. Gerritsen
2006	B	`ed.`	Medical Imaging 2006: Image Processing, MEDICAL IMAGING, San Diego, California, United States, 11-16 February 2006 Image Processing Joseph M. Reinhardt, Josien P. W. Pluim
2006	B	`conf`	Nonrigid registration using a rigidity constraint. Image Processing Marius Staring, Stefan Klein, Josien P. W. Pluim
2006	J	`jnl`	Normalized mutual information based registration using k-means clustering and shading correction. Medical Image Anal. Zeger F. Knops, J. B. Antoine Maintz, Max A. Viergever, Josien P. W. Pluim
2005	B	`conf`	Comparison of gradient approximation techniques for optimisation of mutual information in nonrigid registration. Image Processing Stefan Klein, Marius Staring, Josien P. W. Pluim
2005	B	`conf`	Nonrigid registration with adaptive content-based filtering of the deformation field. Image Processing Marius Staring, Stefan Klein, Josien P. W. Pluim
2004	J	`jnl`	Construction and evaluation of an average CT brain image for inter-subject registration. Comput. Biol. Medicine Cynthia Jongen, Josien P. W. Pluim, Paul H. J. Nederkoorn, Max A. Viergever, Wiro J. Niessen
2004	—	`conf`	Registration Using Segment Intensity Remapping and Mutual Information. MICCAI (1) Zeger F. Knops, J. B. Antoine Maintz, Max A. Viergever, Josien P. W. Pluim
2004	—	`conf`	Ventricle Registration for Inter-subject White Matter Lesion Analysis. MICCAI (1) Cynthia Jongen, Jeroen van der Grond, Josien P. W. Pluim
2004	J	`jnl`	f-information measures in medical image registration. IEEE Trans. Medical Imaging Josien P. W. Pluim, J. B. Antoine Maintz, Max A. Viergever
2003	J	`jnl`	Image Registration. IEEE Trans. Medical Imaging Josien P. W. Pluim, J. Michael Fitzpatrick
2003	J	`jnl`	Mutual Information Based Registration of Medical Images: A Survey. IEEE Trans. Medical Imaging Josien P. W. Pluim, J. B. Antoine Maintz, Max A. Viergever
2003	—	`conf`	Normalized Mutual Information Based PET-MR Registration Using K-Means Clustering and Shading Correction. WBIR Zeger F. Knops, J. B. Antoine Maintz, Max A. Viergever, Josien P. W. Pluim
2003	B	`conf`	Normalized mutual information-based registration using K-means clustering-based histogram binning. Image Processing Zeger F. Knops, J. B. Antoine Maintz, Max A. Viergever, Josien P. W. Pluim
2003	B	`conf`	Three-dimensional appearance for hippocampus segmentation from MRI. Image Processing Jan Klemencic, Josien P. W. Pluim, Max A. Viergever, Hugo G. Schnack, Vojko Valencic
2001	J	`jnl`	Mutual information matching in multiresolution contexts. Image Vis. Comput. Josien P. W. Pluim, J. B. Antoine Maintz, Max A. Viergever
2001	A	`conf`	Two-Step Registration of Subacute to Hyperacute Stroke MRIs. MICCAI Petronella Anbeek, Koen L. Vincken, Matthias J. P. van Osch, Josien P. W. Pluim, Jeroen van der Grond, Max A. Viergever
2001	B	`conf`	f-information measures in medical image registration. Image Processing Josien P. W. Pluim, J. B. Antoine Maintz, Max A. Viergever
2000	J	`jnl`	Image Registration by Maximization of Combined Mutual Information and Gradient Information. IEEE Trans. Medical Imaging Josien P. W. Pluim, J. B. Antoine Maintz, Max A. Viergever
2000	A	`conf`	Image Registration by Maximization of Combined Mututal Information and Gradient Information. MICCAI Josien P. W. Pluim, J. B. Antoine Maintz, Max A. Viergever
2000	J	`jnl`	Interpolation Artefacts in Mutual Information-Based Image Registration. Comput. Vis. Image Underst. Josien P. W. Pluim, J. B. Antoine Maintz, Max A. Viergever
1999	B	`conf`	Mutual information matching and interpolation artifacts. Image Processing Josien P. W. Pluim, J. B. Antoine Maintz, Max A. Viergever
1999	A	`conf`	Quantitative Comparison of Sinc-Approximating Kernels for Medical Image Interpolation. MICCAI Erik H. W. Meijering, Wiro J. Niessen, Josien P. W. Pluim, Max A. Viergever
1998	B	`conf`	Multiscale approach to mutual information matching. Image Processing Josien P. W. Pluim, J. B. Antoine Maintz, Max A. Viergever
1995	—	`conf`	Car license plate recognition with neural networks and fuzzy logic. ICNN J. A. G. Nijhuis, M. ter Brugge, K. A. Helmholt, Josien P. W. Pluim, Lambert Spaanenburg, Rienk S. Venema, Michel A. Westenberg