Joshua Wing Kei Ho

26 papers A 3Journal 19Unranked 4
YearRankTypeTitle / Venue / Authors
2022 J jnl
Evaluation of Experimental Protocols for Shotgun Whole-Genome Metagenomic Discovery of Antibiotic Resistance Genes.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ken Hung-On Yu, Xiunan Fang, Haobin Yao, Bond Ng, Tak Kwan Leung, Ling-ling Wang, Chi Ho Lin, Agnes Sze Wah Chan, Wai Keung Leung, Suet Yi Leung, Joshua Wing Kei Ho
2020 J jnl
dv-trio: a family-based variant calling pipeline using DeepVariant.
Bioinform.
Eddie Ip, Clinton Hadinata, Joshua Wing Kei Ho, Eleni Giannoulatou
2019 J jnl
Discovery of perturbation gene targets via free text metadata mining in Gene Expression Omnibus.
Comput. Biol. Chem.
Djordje Djordjevic, Joshua Y. S. Tang, Yun Xin Chen, Shu Lun Shannon Kwan, Raymond W. K. Ling, Gordon Qian, Chelsea Y. Y. Woo, Samuel J. Ellis, Joshua Wing Kei Ho
2019 J jnl
Ultrafast clustering of single-cell flow cytometry data using FlowGrid.
BMC Syst. Biol.
Xiaoxin Ye, Joshua Wing Kei Ho
2018 J jnl
C3: An R package for cross-species compendium-based cell-type identification.
Comput. Biol. Chem.
Md Humayun Kabir, Djordje Djordjevic, Michael D. O'Connor, Joshua Wing Kei Ho
2018 J jnl
iSyTE 2.0: a database for expression-based gene discovery in the eye.
Nucleic Acids Res.
Atul Kakrana, Andrian Yang, Deepti Anand, Djordje Djordjevic, S. Deepthi Ramachandruni, Abhyudai Singh, Hongzhan Huang, Joshua Wing Kei Ho, Salil A. Lachke
2017 J jnl
Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud.
Bioinform.
Andrian Yang, Michael Troup, Peijie Lin, Joshua Wing Kei Ho
2017 — conf
Harnessing Multiple Source Test Cases in Metamorphic Testing: A Case Study in Bioinformatics.
MET@ICSE
Joshua Y. S. Tang, Andrian Yang, Tsong Yueh Chen, Joshua Wing Kei Ho
2017 J jnl
Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells.
Bioinform.
Pengyi Yang, Andrew J. Oldfield, Taiyun Kim, Andrian Yang, Jean Yee Hwa Yang, Joshua Wing Kei Ho
2016 — conf
A cloud-based framework for applying metamorphic testing to a bioinformatics pipeline.
MET@ICSE
Michael Troup, Andrian Yang, Amir Hossein Kamali, Eleni Giannoulatou, Tsong Yueh Chen, Joshua Wing Kei Ho
2016 J jnl
XGSA: A statistical method for cross-species gene set analysis.
Bioinform.
Djordje Djordjevic, Kenro Kusumi, Joshua Wing Kei Ho
2015 J jnl
hiHMM: Bayesian non-parametric joint inference of chromatin state maps.
Bioinform.
Kyung-Ah Sohn, Joshua Wing Kei Ho, Djordje Djordjevic, Hyun-Hwan Jeong, Peter J. Park, Ju Han Kim
2014 J jnl
Comparative analysis of metazoan chromatin organization Open.
Nat.
Joshua Wing Kei Ho, Youngsook L. Jung, Tao Liu, Burak Han Alver, Soohyun Lee, Kohta Ikegami, Kyung-Ah Sohn, Aki Minoda, Michael Y. Tolstorukov, Alex Appert, Stephen C. J. Parker, Tingting Gu, Anshul Kundaje, Nicole C. Riddle, Eric Bishop, Thea A. Egelhofer, Sheng'en Shawn Hu, Artyom A. Alekseyenko, Andreas Rechtsteiner, Dalal Asker, Jason A. Belsky, Sarah K. Bowman, Q. Brent Chen, Ron A.-J. Chen, Daniel S. Day, Yan Dong, Andrea C. Dose, Xikun Duan, Charles B. Epstein, Sevinc Ercan, Elise A. Feingold, Francesco Ferrari, Jacob M. Garrigues, Nils Gehlenborg, Peter J. Good, Psalm Haseley, Daniel He, Moritz Herrmann, Michael M. Hoffman, Tess E. Jeffers, Peter V. Kharchenko, Paulina Kolasinska-Zwierz, Chitra V. Kotwaliwale, Nischay Kumar, Sasha A. Langley, Erica Larschan, Isabel Latorre, Maxwell W. Libbrecht, Xueqiu Lin, Richard Park, Michael J. Pazin, Hoang N. Pham, Annette Plachetka, Bo Qin, Yuri B. Schwartz, Noam Shoresh, Przemyslaw Stempor, Anne Vielle, Chengyang Wang, Christina M. Whittle, Huiling Xue, Robert E. Kingston, Ju Han Kim, Bradley E. Bernstein, Abby F. Dernburg, Vincenzo Pirrotta, Mitzi I. Kuroda, William S. Noble, Thomas D. Tullius, Manolis Kellis, David M. MacAlpine, Susan Strome, Sarah C. R. Elgin, Xiaole Shirley Liu, Jason D. Lieb, Julie Ahringer, Gary H. Karpen, Peter J. Park
2014 J jnl
Verification and validation of bioinformatics software without a gold standard: a case study of BWA and Bowtie.
BMC Bioinform.
Eleni Giannoulatou, Shin-Ho Park, David T. Humphreys, Joshua Wing Kei Ho
2011 J jnl
Gene-gene interaction filtering with ensemble of filters.
BMC Bioinform.
Pengyi Yang, Joshua Wing Kei Ho, Jean Yee Hwa Yang, Bing Bing Zhou
2011 J jnl
Testing and validating machine learning classifiers by metamorphic testing.
J. Syst. Softw.
Xiaoyuan Xie, Joshua Wing Kei Ho, Christian Murphy, Gail E. Kaiser, Baowen Xu, Tsong Yueh Chen
2011 J jnl
Verification of phylogenetic Inference Programs Using Metamorphic Testing.
J. Bioinform. Comput. Biol.
Md. Shaik Sadi, Fei-Ching Kuo, Joshua Wing Kei Ho, Michael A. Charleston, Tsong Yueh Chen
2010 J jnl
A genetic ensemble approach for gene-gene interaction identification.
BMC Bioinform.
Pengyi Yang, Joshua Wing Kei Ho, Albert Y. Zomaya, Bing Bing Zhou
2009 J jnl
A voting approach to identify a small number of highly predictive genes using multiple classifiers.
BMC Bioinform.
Md. Rafiul Hassan, M. Maruf Hossain, James Bailey, Geoff MacIntyre, Joshua Wing Kei Ho, Kotagiri Ramamohanarao
2009 J jnl
An innovative approach for testing bioinformatics programs using metamorphic testing.
BMC Bioinform.
Tsong Yueh Chen, Joshua Wing Kei Ho, Huai Liu, Xiaoyuan Xie
2009 — conf
Application of Metamorphic Testing to Supervised Classifiers.
QSIC
Xiaoyuan Xie, Joshua Wing Kei Ho, Christian Murphy, Gail E. Kaiser, Baowen Xu, Tsong Yueh Chen
2008 A conf
Differential variability analysis of gene expression and its application to human diseases.
ISMB
Joshua Wing Kei Ho, Maurizio Stefani, Cristobal G. dos Remedios, Michael A. Charleston
2006 — conf
PathBank: Web-Based Querying and Visualziation of an Integrated Biological Pathway Database.
CGIV
Joshua Wing Kei Ho, Tristan Manwaring, Seok-Hee Hong, Uwe Röhm, David Cho Yau Fung, Kai Xu, Tim Kraska, David Hart
2006 J jnl
SeqVis: Visualization of compositional heterogeneity in large alignments of nucleotides.
Bioinform.
Joshua Wing Kei Ho, Cameron E. Adams, Jie Bin Lew, Timothy J. Matthews, Chiu Chin Ng, Arash Shahabi-Sirjani, Leng Hong Tan, Yu Zhao, Simon Easteal, Susan R. Wilson, Lars S. Jermiin
2005 A conf
Drawing Clustered Graphs in Three Dimensions.
GD
Joshua Wing Kei Ho, Seok-Hee Hong
2005 A conf
GEOMI: GEOmetry for Maximum Insight.
GD
Adel Ahmed, Tim Dwyer, Michael Forster, Xiaoyan Fu, Joshua Wing Kei Ho, Seok-Hee Hong, Dirk Koschützki, Colin Murray, Nikola S. Nikolov, Ronnie Taib, Alexandre Tarassov, Kai Xu