Josh F. Peterson

51 papers Misc 20Journal 26Unranked 5

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	An artificial intelligence framework for end-to-end rare disease phenotyping from clinical notes using large language models. CoRR Cathy Shyr, Yan Hu, Rory J. Tinker, Thomas Cassini, Kevin W. Byram, Rizwan Hamid, Daniel Fabbri, Adam Wright, Josh F. Peterson, Lisa Bastarache, Hua Xu
2025	J	`jnl`	A standard-based taxonomy of features that affect user response to clinical decision support alerts. BMC Medical Informatics Decis. Mak. Siru Liu, Allison B. McCoy, Dean F. Sittig, Josh F. Peterson, Thomas A. Lasko, Adam Wright
2025	—	`conf`	Accuracy of Large Language Models in Generating Rare Disease Differential Diagnosis Using Key Clinical Features. MedInfo Cathy Shyr, Rory J. Tinker, Paul A. Harris, Alex C. Cheng, Kevin W. Byram, Lisa Bastarache, Josh F. Peterson, Rizwan Hamid, Hua Xu, Thomas Cassini
2024	J	`jnl`	Large language models facilitate the generation of electronic health record phenotyping algorithms. J. Am. Medical Informatics Assoc. Chao Yan, Henry H. Ong, Monika E. Grabowska, Matthew S. Krantz, Wu-Chen Su, Alyson L. Dickson, Josh F. Peterson, QiPing Feng, Dan M. Roden, C. Michael Stein, Vern Eric Kerchberger, Bradley A. Malin, Wei-Qi Wei
2024	J	`jnl`	Leveraging explainable artificial intelligence to optimize clinical decision support. J. Am. Medical Informatics Assoc. Siru Liu, Allison B. McCoy, Josh F. Peterson, Thomas A. Lasko, Dean F. Sittig, Scott D. Nelson, Jennifer Andrews, Lorraine Patterson, Cheryl M. Cobb, David Mulherin, Colleen T. Morton, Adam Wright
2024	J	`jnl`	Leveraging generative AI to prioritize drug repurposing candidates for Alzheimer's disease with real-world clinical validation. npj Digit. Medicine Chao Yan, Monika E. Grabowska, Alyson L. Dickson, Bingshan Li, Zhexing Wen, Dan M. Roden, C. Michael Stein, Peter J. Embí, Josh F. Peterson, QiPing Feng, Bradley A. Malin, Wei-Qi Wei
2024	J	`jnl`	Leveraging large language models for generating responses to patient messages - a subjective analysis. J. Am. Medical Informatics Assoc. Siru Liu, Allison B. McCoy, Aileen P. Wright, Babatunde Carew, Julian Z. Genkins, Sean S. Huang, Josh F. Peterson, Bryan D. Steitz, Adam Wright
2024	J	`jnl`	Using large language model to guide patients to create efficient and comprehensive clinical care message. J. Am. Medical Informatics Assoc. Siru Liu, Aileen P. Wright, Allison B. McCoy, Sean S. Huang, Julian Z. Genkins, Josh F. Peterson, Yaa A. Kumah-Crystal, William Martinez, Babatunde Carew, Dara Eckerle Mize, Bryan D. Steitz, Adam Wright
2023	J	`jnl`	Evaluating and mitigating bias in machine learning models for cardiovascular disease prediction. J. Biomed. Informatics Fuchen Li, Patrick Wu, Henry H. Ong, Josh F. Peterson, Wei-Qi Wei, Juan Zhao
2023	J	`jnl`	Scanning the medical phenome to identify new diagnoses after recovery from COVID-19 in a US cohort. J. Am. Medical Informatics Assoc. Vern Eric Kerchberger, Josh F. Peterson, Wei-Qi Wei
2022	Misc	`conf`	High-throughput assessment of genomic outcomes: development and validation of the HI-TAG knowledgebase. AMIA Jodell E. Linder, Ran Tao, Ni Ketut Wilmayani, Marc S. Williams, Josh F. Peterson
2021	J	`jnl`	A retrospective approach to evaluating potential adverse outcomes associated with delay of procedures for cardiovascular and cancer-related diagnoses in the context of COVID-19. J. Biomed. Informatics Neil S. Zheng, Jeremy L. Warner, Travis J. Osterman, Quinn Stanton Wells, Xiao-Ou Shu, Stephen A. Deppen, Seth J. Karp, Shon Dwyer, QiPing Feng, Nancy J. Cox, Josh F. Peterson, C. Michael Stein, Dan M. Roden, Kevin B. Johnson, Wei-Qi Wei
2021	J	`jnl`	ConceptWAS: A high-throughput method for early identification of COVID-19 presenting symptoms and characteristics from clinical notes. J. Biomed. Informatics Juan Zhao, Monika E. Grabowska, Vern Eric Kerchberger, Joshua C. Smith, H. Nur Eken, QiPing Feng, Josh F. Peterson, S. Trent Rosenbloom, Kevin B. Johnson, Wei-Qi Wei
2021	J	`jnl`	Infobuttons for Genomic Medicine: Requirements and Barriers. Appl. Clin. Inform. Luke V. Rasmussen, John J. Connolly, Guilherme Del Fiol, Robert R. Freimuth, Douglas B. Pet, Josh F. Peterson, Brian H. Shirts, Justin B. Starren, Marc S. Williams, Nephi Walton, Casey Overby Taylor
2021	Misc	`conf`	Mapping the Read2/CTV3 controlled clinical terminologies to Phecodes in UK Biobank primary care electronic health records: implementation and evaluation. AMIA Spiros C. Denaxas, Ge Liu, QiPing Feng, Ghazaleh Fatemifar, Lisa Bastarache, Vern Eric Kerchberger, Aroon D. Hingorani, R. Tom Lumbers, Josh F. Peterson, Wei-Qi Wei, Harry Hemingway
2021	J	`jnl`	Phenotyping coronavirus disease 2019 during a global health pandemic: Lessons learned from the characterization of an early cohort. J. Biomed. Informatics Sarah DeLozier, Sarah Bland, Melissa McPheeters, Quinn Stanton Wells, Eric Farber-Eger, Cosmin Adrian Bejan, Daniel Fabbri, S. Trent Rosenbloom, Dan M. Roden, Kevin B. Johnson, Wei-Qi Wei, Josh F. Peterson, Lisa Bastarache
2021	Misc	`conf`	Using Genomic Association Replication Rates as an EHR Quality Measure via the Phenotype-Genotype Reference Map (PGRM). AMIA Sarah DeLozier, Josh F. Peterson, Joshua C. Denny, Lisa Bastarache
2019	Misc	`conf`	Development of a Genomic Data Flow Framework: Results of a Survey Administered to NIH-NHGRI IGNITE and eMERGE Consortia Participants. AMIA Paul Richard Dexter, Henry H. Ong, Amanda Elsey, Gillian Bell, Nephi Walton, Wendy K. Chung, Luke V. Rasmussen, J. Kevin Hicks, Aniwaa Owusu-obeng, Stuart A. Scott, Stephen B. Ellis, Josh F. Peterson
2019	Misc	`conf`	Extracting Drug Exposure Epochs and Drug Response Outcomes from Electronic Health Records. AMIA Andrea H. Ramirez, Yaping Shi, Elliot M. Fielstein, Jonathan S. Schildcrout, Henry H. Ong, Joshua C. Denny, Josh F. Peterson
2019	J	`jnl`	Pharmacogenomic clinical decision support design and multi-site process outcomes analysis in the eMERGE Network. J. Am. Medical Informatics Assoc. Timothy M. Herr, Josh F. Peterson, Luke V. Rasmussen, Pedro J. Caraballo, Peggy L. Peissig, Justin B. Starren
2018	Misc	`conf`	Development and Implementation of Genomic Data Pipelines within US institutions: A pilot multi-site survey among NHGRI's IGNITE Genomic Medicine Sites. AMIA Josh F. Peterson, Henry H. Ong, Julie A. Lynch, J. Kevin Hicks, Paul Richard Dexter
2018	Misc	`conf`	EHR Extraction of Longitudinal Exposure to Proton Pump Inhibitors. AMIA Andrea H. Ramirez, Elliot M. Fielstein, QiPing Feng, Henry H. Ong, Jonathan S. Schildcrout, Yaping Shi, Joshua C. Denny, Josh F. Peterson
2018	J	`jnl`	Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example. J. Am. Medical Informatics Assoc. Samuel J. Aronson, Lawrence J. Babb, Darren C. Ames, Richard A. Gibbs, Eric Venner, John J. Connelly, Keith Marsolo, Chunhua Weng, Marc S. Williams, Andrea L. Hartzler, Wayne H. Liang, James D. Ralston, Emily Beth Devine, Shawn N. Murphy, Christopher G. Chute, Pedro J. Caraballo, Iftikhar J. Kullo, Robert R. Freimuth, Luke V. Rasmussen, Firas H. Wehbe, Josh F. Peterson, Jamie R. Robinson, Ken Wiley, Casey Overby Taylor, eMERGE Network EHRI Working Group
2018	Misc	`conf`	Preemptive Clinical Decision Support: Delivering Precise Information Clinicians Will Actually Use to Prevent Harm. AMIA James M. Hoffman, Josh F. Peterson, Naveen Muthu, Henry M. Dunnenberger
2017	Misc	`conf`	Strategies for Equitable Pharmacogenomic-Guided Warfarin Dosing Among European and African American Individuals in a Clinical Population. PSB Laura K. Wiley, Jacob P. VanHouten, David Samuels, Melinda Aldrich, Dan M. Roden, Josh F. Peterson, Joshua C. Denny
2016	J	`jnl`	Developing knowledge resources to support precision medicine: principles from the Clinical Pharmacogenetics Implementation Consortium (CPIC). J. Am. Medical Informatics Assoc. James M. Hoffman, Henry M. Dunnenberger, J. Kevin Hicks, Kelly E. Caudle, Michelle Whirl Carrillo, Robert R. Freimuth, Marc S. Williams, Teri E. Klein, Josh F. Peterson
2016	—	`conf`	Evaluating Physician Response to Pharmacogenomic-Guided Warfarin Dosing in an Hospitalized Population. CRI Laura K. Wiley, Marc Beller, Julie Field, Josh F. Peterson, Joshua C. Denny
2016	Misc	`conf`	Implementing Pharmacogenomic Clinical Decision Support: Design and Prescriber Response in the eMERGE Network. AMIA Timothy M. Herr, Josh F. Peterson, Luke V. Rasmussen, Pedro J. Caraballo
2016	—	`conf`	The Clinical Pharmacogenetics Implementation Consortium (CPIC) Term Standardization for Clinical Pharmacogenetic Test Results: Alleles and Phenotypes. CRI James M. Hoffman, Henry M. Dunnenberger, Jonathan D. Burlison, Michelle Whirl Carrillo, Robert R. Freimuth, Marc S. Williams, Stuart A. Scott, Josh F. Peterson, Heidi L. Rehm, Teri E. Klein, Mary V. Relling, Kelly E. Caudle
2015	J	`jnl`	CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record. J. Am. Medical Informatics Assoc. Brian H. Shirts, Joseph S. Salama, Samuel J. Aronson, Wendy K. Chung, Stacy W. Gray, Lucia A. Hindorff, Gail P. Jarvik, Sharon E. Plon, Elena M. Stoffel, Peter Tarczy-Hornoch, Eliezer M. Van Allen, Karen E. Weck, Christopher G. Chute, Robert R. Freimuth, Robert Grundmeier, Andrea L. Hartzler, Rongling Li, Peggy L. Peissig, Josh F. Peterson, Luke V. Rasmussen, Justin B. Starren, Marc S. Williams, Casey Lynnette Overby
2015	J	`jnl`	National Veterans Health Administration inpatient risk stratification models for hospital-acquired acute kidney injury. J. Am. Medical Informatics Assoc. Robert M. Cronin, Jacob P. VanHouten, Edward D. Siew, Svetlana K. Eden, Stephan D. Fihn, Christopher D. Nielson, Josh F. Peterson, Clifton R. Baker, T. Alp Ikizler, Theodore Speroff, Michael E. Matheny
2015	Misc	`conf`	Public Implementation Resources for Genomic Medicine. AMIA Josh F. Peterson, Marc S. Williams, Casey L. Overby, Robert R. Freimuth, Iftikhar J. Kullo
2014	Misc	`conf`	A Template for Authoring and Adapting Genomic Medicine Content in the eMERGE Infobutton Project. AMIA Casey L. Overby, Luke V. Rasmussen, Andrea L. Hartzler, John J. Connolly, Josh F. Peterson, RoseMary Hedberg, Robert R. Freimuth, Brian H. Shirts, Joshua C. Denny, Eric B. Larson, Christopher G. Chute, Gail P. Jarvik, James D. Ralston, Alan R. Shuldiner, Iftikhar J. Kullo, Peter Tarczy-Hornoch, Marc S. Williams
2013	Misc	`conf`	Analyzing the Impact of Pharmacogenomics on Clinical Practice: A Visual Method. AMIA Ioana Danciu, Josh F. Peterson
2013	Misc	`conf`	Establishing the Need for Personalized Medicine: Simvastatin Exposure Among a SLCO1B1 Variant Population. AMIA Laura K. Wiley, Josh F. Peterson, Joshua C. Denny, William S. Bush
2012	J	`jnl`	Focus on health information technology, electronic health records and their financial impact: A framework for evaluating the appropriateness of clinical decision support alerts and responses. J. Am. Medical Informatics Assoc. Allison B. McCoy, Lemuel R. Waitman, Julia B. Lewis, Julie A. Wright, David P. Choma, Randolph A. Miller, Josh F. Peterson
2010	J	`jnl`	Extracting timing and status descriptors for colonoscopy testing from electronic medical records. J. Am. Medical Informatics Assoc. Joshua C. Denny, Josh F. Peterson, Neesha N. Choma, Hua Xu, Randolph A. Miller, Lisa Bastarache, Neeraja B. Peterson
2009	Misc	`conf`	Development of a Natural Language Processing System to Identify Timing and Status of Colonoscopy Testing in Electronic Medical Records. AMIA Joshua C. Denny, Josh F. Peterson, Neesha N. Choma, Hua Xu, Randolph A. Miller, Lisa Bastarache, Neeraja B. Peterson
2009	J	`jnl`	Identifying QT prolongation from ECG impressions using a general-purpose Natural Language Processor. Int. J. Medical Informatics Joshua C. Denny, Randolph A. Miller, Lemuel R. Waitman, Mark Arrieta, Josh F. Peterson
2009	J	`jnl`	Research Paper: Evaluation of a Method to Identify and Categorize Section Headers in Clinical Documents. J. Am. Medical Informatics Assoc. Joshua C. Denny, Anderson Spickard III, Kevin B. Johnson, Neeraja B. Peterson, Josh F. Peterson, Randolph A. Miller
2007	—	`conf`	Identifying QT prolongation from ECG impressions using Natural Language Processing and Negation Detection. MedInfo Joshua C. Denny, Josh F. Peterson
2007	—	`conf`	Physicians' Response to Guided Geriatric Dosing: Initial Results from a Randomized Trial. MedInfo Josh F. Peterson, Benjamin P. Rosenbaum, Lemuel R. Waitman, Ralf Habermann, James S. Powers, Debbie Harrell, Randolph A. Miller
2007	J	`jnl`	Research Paper: Medication Administration Discrepancies Persist Despite Electronic Ordering. J. Am. Medical Informatics Assoc. Fern FitzHenry, Josh F. Peterson, Mark Arrieta, Lemuel R. Waitman, Jonathan S. Schildcrout, Randolph A. Miller
2005	Misc	`conf`	Identifying UMLS concepts from ECG Impressions using Knowledge Map. AMIA Joshua C. Denny, Anderson Spickard III, Randolph A. Miller, Jonathan S. Schildcrout, Dawood Darbar, S. Trent Rosenbloom, Josh F. Peterson
2005	Misc	`conf`	Measuring the Quality of Medication Administration. AMIA Fern FitzHenry, Josh F. Peterson, Mark Arrieta, Randolph A. Miller
2003	Misc	`conf`	Adequacy of representation of the National Drug File Reference Terminology Physiologic Effects reference hierarchy for commonly prescribed medications. AMIA S. Trent Rosenbloom, Joseph Awad, Theodore Speroff, Peter L. Elkin, Russell L. Rothman, Anderson Spickard III, Josh F. Peterson, Brent A. Bauer, Dietlind Wahner-Roedler, Mark Lee, William M. Gregg, Kevin B. Johnson, Jim Jirjis, Mark Erlbaum, John S. Carter, Michael J. Lincoln, Steven H. Brown
2003	J	`jnl`	Research Paper: Electronically Screening Discharge Summaries for Adverse Medical Events. J. Am. Medical Informatics Assoc. Harvey J. Murff, Alan J. Forster, Josh F. Peterson, Julie M. Fiskio, Heather L. Heiman, David W. Bates
2002	Misc	`conf`	Gerios: Recommending Drugs and Dosing for Elderly Patients. AMIA Josh F. Peterson, David W. Bates, Minal Patel, Jerry Avorn, Gilad J. Kuperman
2002	J	`jnl`	Poster Abstract: Drug-Lab Triggers Have Potential to Prevent Adverse Drug Events in Outpatients. J. Am. Medical Informatics Assoc. Josh F. Peterson, Deborah H. Williams, Andrew C. Seger, Tejal K. Gandhi, David W. Bates
2002	J	`jnl`	Poster Abstract: Electronically Screening Discharge Summaries for Adverse Medical Events. J. Am. Medical Informatics Assoc. Harvey J. Murff, Alan J. Forster, Josh F. Peterson, Julie M. Fiskio, Heather L. Heiman, David W. Bates
2001	Misc	`conf`	Drug-Lab Triggers Have Potential to Prevent Adverse Drug Events in Outpatients. AMIA Josh F. Peterson, Deborah H. Williams, Andy Seger, Tejal K. Gandhi, David W. Bates