Joseph M. Plasek

30 papers Misc 7Journal 19Unranked 4
YearRankTypeTitle / Venue / Authors
2025 J jnl
Comparative ranking of marginal confounding impact of natural language processing-derived versus structured features in pharmacoepidemiology.
Comput. Biol. Medicine
Joseph M. Plasek, Richard Wyss, Janick Weberpals, Jie Yang, Thomas DeRamus, Theodore N. Tsacogianis, Kerry Ngan, Lily G. Bessette, Kueiyu Joshua Lin, Li Zhou
2025 J jnl
Natural language processing for scalable feature engineering and ultra-high-dimensional confounding adjustment in healthcare database studies.
J. Biomed. Informatics
Richard Wyss, Jie Yang, Sebastian Schneeweiss, Joseph M. Plasek, Li Zhou, Thomas DeRamus, Janick Weberpals, Kerry Ngan, Theodore N. Tsacogianis, Kueiyu Joshua Lin
2024 J jnl
High-dimensional multiple imputation (HDMI) for partially observed confounders including natural language processing-derived auxiliary covariates.
CoRR
Janick Weberpals, Pamela A. Shaw, Kueiyu Joshua Lin, Richard Wyss, Joseph M. Plasek, Li Zhou, Kerry Ngan, Thomas DeRamus, Sudha R. Raman, Bradley G. Hammill, Hana Lee, Sengwee Toh, John G. Connolly, Kimberly J. Dandreo, Fang Tian, Wei Liu, Jie Li, José J. Hernández-Muñoz, Sebastian Schneeweiss, Rishi J. Desai
2024 J jnl
Large language models for biomedicine: foundations, opportunities, challenges, and best practices.
J. Am. Medical Informatics Assoc.
Satya S. Sahoo, Joseph M. Plasek, Hua Xu, Özlem Uzuner, Trevor Cohen, Meliha Yetisgen, Hongfang Liu, Stéphane M. Meystre, Yanshan Wang
2023 J jnl
Characterizing terminology applied by authors and database producers to informatics literature on consumer engagement with wearable devices.
J. Am. Medical Informatics Assoc.
Kristine M. Alpi, Christie L. Martin, Joseph M. Plasek, Scott M. Sittig, Catherine Arnott Smith, Elizabeth Weinfurter, Jennifer K. Wells, Rachel Wong, Robin R. Austin
2023 J jnl
Learning from undercoded clinical records for automated International Classification of Diseases (ICD) coding.
J. Am. Medical Informatics Assoc.
Yucheng Jin, Yun Xiong, Dan Shi, Yifei Lin, Lifang He, Yao Zhang, Joseph M. Plasek, Li Zhou, David W. Bates, Chunlei Tang
2022 Misc conf
Sampling Adverse Drug Events in Outpatient Clinical Notes for Natural Language Processing Tasks.
AMIA
Joseph M. Plasek, Abigail Salem, Stuart R. Lipsitz, Mary G. Amato, Dinah Foer, Heba Edrees, Suzanne V. Blackley, Brett R. South, Amol Rajmane, Mario Lorenzo, Paul Felt, Brendan Bull, Gretchen Purcell Jackson, Henry Feldman, David W. Bates, Li Zhou
2022 Misc conf
Using Twitter Data to Understand Public Perceptions of Approved versus Off-label Use for COVID-19-related Medications.
AMIA
Yining Hua, Hang Jiang, Jie Yang, Shixu Lin, Joseph M. Plasek, David W. Bates, Li Zhou
2022 J jnl
Using Twitter Data to Understand Public Perceptions of Approved versus Off-label Use for COVID-19-related Medications.
CoRR
Yining Hua, Hang Jiang, Shixu Lin, Jie Yang, Joseph M. Plasek, David W. Bates, Li Zhou
2022 J jnl
Using Twitter data to understand public perceptions of approved versus off-label use for COVID-19-related medications.
J. Am. Medical Informatics Assoc.
Yining Hua, Hang Jiang, Shixu Lin, Jie Yang, Joseph M. Plasek, David W. Bates, Li Zhou
2022 J jnl
Using an optimized generative model to infer the progression of complications in type 2 diabetes patients.
BMC Medical Informatics Decis. Mak.
Xiaoxia Wang, Yifei Lin, Yun Xiong, Suhua Zhang, Yanming He, Yuqing He, Zhikun Zhang, Joseph M. Plasek, Li Zhou, David W. Bates, Chunlei Tang
2021 Misc conf
Addressing Disparities in Diabetes Using Temporal Fairness Models.
AMIA
Joseph M. Plasek, Chunlei Tang, Xiaoxia Wang, Yun Xiong, Yangyong Zhu, Yanming He, Patricia C. Dykes, David W. Bates, Li Zhou
2021 J jnl
Estimating Time to Progression of Chronic Obstructive Pulmonary Disease With Tolerance.
IEEE J. Biomed. Health Informatics
Chunlei Tang, Joseph M. Plasek, Xiao Shi, Meihan Wan, Haohan Zhang, Min-Jeoung Kang, Liqin Wang, Sevan M. Dulgarian, Yun Xiong, Jing Ma, David W. Bates, Li Zhou
2021 — conf
Identifying and Reconciling Patients' Allergy Information Within the Electronic Health Record.
MedInfo
Sachin Vallamkonda, Carlos A. Ortega, Ying-Chih Lo, Suzanne V. Blackley, Liqin Wang, Diane L. Seger, Kimberly G. Blumenthal, Joseph M. Plasek, Foster R. Goss, Li Zhou
2020 J jnl
Following data as it crosses borders during the COVID-19 pandemic.
J. Am. Medical Informatics Assoc.
Joseph M. Plasek, Chunlei Tang, Yangyong Zhu, Yajun Huang, David W. Bates
2019 J jnl
A temporal visualization of chronic obstructive pulmonary disease progression using deep learning and unstructured clinical notes.
BMC Medical Informatics Decis. Mak.
Chunlei Tang, Joseph M. Plasek, Haohan Zhang, Min-Jeoung Kang, Haokai Sheng, Yun Xiong, David W. Bates, Li Zhou
2019 — conf
Data Reconstruction Based on Temporal Expressions in Clinical Notes.
BIBM
Zhikun Zhang, Chunlei Tang, Joseph M. Plasek, Yun Xiong, Min-Jeoung Kang, Patricia C. Dykes, David W. Bates, Li Zhou
2019 Misc conf
Harmonizing Oncology Data from Multiple Institutions with the Observational Medical Outcomes Partnership's Common Data Model.
AMIA
Joseph M. Plasek, John Weissert, Kourosh Ravvaz
2019 J jnl
Visualizing Literature Review Theme Evolution on Timeline Maps: Comparison Across Disciplines.
IEEE Access
Chunlei Tang, Yangyong Zhu, Suzanne V. Blackley, Joseph M. Plasek, Meihan Wan, Li Zhou, Jing Ma, David W. Bates
2018 — conf
A Deep Learning Approach to Handling Temporal Variation in Chronic Obstructive Pulmonary Disease Progression.
BIBM
Chunlei Tang, Joseph M. Plasek, Haohan Zhang, Yun Xiong, David W. Bates, Li Zhou
2018 J jnl
A value set for documenting adverse reactions in electronic health records.
J. Am. Medical Informatics Assoc.
Foster R. Goss, Kenneth H. Lai, Maxim Topaz, Warren W. Acker, Leigh Kowalski, Joseph M. Plasek, Kimberly G. Blumenthal, Diane L. Seger, Sarah P. Slight, Kin Wah Fung, Frank Y. Chang, David W. Bates, Li Zhou
2018 Misc conf
Comparing Machine Learning Algorithms to Predict Falls of Community Dwelling Older Adults.
AMIA
Rumei Yang, Joseph M. Plasek, Andrew Wilson, Mollie R. Cummins, Katherine A. Sward
2018 Misc conf
RegionAl: an Optimized Regional Classifier to Predict Mortality in Chronic Obstructive Pulmonary Disease Patients.
AMIA
Haohan Zhang, Chunlei Tang, Joseph M. Plasek, Yun Xiong, Jing Ma, Li Zhou, David W. Bates
2017 J jnl
Comment Topic Evolution on a Cancer Institution's Facebook Page.
Appl. Clin. Inform.
Li Zhou, Joseph M. Plasek, Ronen Rozenblum, David W. Bates, Chunlei Tang
2017 — conf
Content and Trends in Medical Informatics Publications over the Past Two Decades.
MedInfo
Liqin Wang, Maxim Topaz, Joseph M. Plasek, Li Zhou
2017 J jnl
Solving Interoperability in Translational Health.
Appl. Clin. Inform.
Anne M. Turner, Julio C. Facelli, Monique W. M. Jaspers, Thomas Wetter, Daniel Pfeifer, Laël Cranmer Gatewood, Terry Adam, Yu-Chuan Li, Ming-Chin Lin, R. Scott Evans, Anna L. Beukenhorst, Hugo Johan Theodoore van Mens, Esmée Tensen, Christian Bock, Laura Fendrich, Peter Seitz, Julian Suleder, Ranyah Aldekhyyel, Kent Bridgeman, Zhen Hu, Aaron Sattler, Shin-Yi Guo, Md. Mohaimenul Islam, Dina Nur Anggraini Ningrum, Hsin-Ru Tung, Jiantao Bian, Joseph M. Plasek, Casey A. Rommel, Juandalyn Burke, Harkirat Sohi
2016 J jnl
Food entries in a large allergy data repository.
J. Am. Medical Informatics Assoc.
Joseph M. Plasek, Foster R. Goss, Kenneth H. Lai, Jason J. Lau, Diane L. Seger, Kimberly G. Blumenthal, Paige G. Wickner, Sarah P. Slight, Frank Y. Chang, Maxim Topaz, David W. Bates, Li Zhou
2014 Misc conf
An Evaluation of a Natural Language Processing Tool for Identifying and Encoding Allergy Information in Emergency Department Clinical Notes.
AMIA
Foster R. Goss, Joseph M. Plasek, Jason J. Lau, Diane L. Seger, Frank Y. Chang, Li Zhou
2013 J jnl
Evaluating standard terminologies for encoding allergy information.
J. Am. Medical Informatics Assoc.
Foster R. Goss, Li Zhou, Joseph M. Plasek, Carol A. Broverman, George A. Robinson, Blackford Middleton, Roberto A. Rocha
2012 J jnl
Mapping Partners Master Drug Dictionary to RxNorm using an NLP-based approach.
J. Biomed. Informatics
Li Zhou, Joseph M. Plasek, Lisa M. Mahoney, Frank Y. Chang, Dana DiMaggio, Roberto A. Rocha