Jose Lugo-Martinez

12 papers A* 1Journal 10Unranked 1
YearRankTypeTitle / Venue / Authors
2026 J jnl
Breaking the Bottlenecks: Scalable Diffusion Models for 3D Molecular Generation.
CoRR
Adrita Das, Peiran Jiang, Dantong Zhu, Barnabás Póczos, Jose Lugo-Martinez
2025 J jnl
Combined Topological Data Analysis and Geometric Deep Learning Reveal Niches by the Quantification of Protein Binding Pockets.
J. Comput. Biol.
Peiran Jiang, Jose Lugo-Martinez
2023 J jnl
A hybrid positive unlabeled learning framework for uncovering scaffolds across human proteome by measuring the propensity to drive phase separation.
Briefings Bioinform.
Peiran Jiang, Ruoxi Cai, Jose Lugo-Martinez, Yaping Guo
2022 J jnl
Integrating longitudinal clinical and microbiome data to predict growth faltering in preterm infants.
J. Biomed. Informatics
Jose Lugo-Martinez, Siwei Xu, Justine Levesque, Daniel Gallagher, Leslie A. Parker, Josef Neu, Christopher J. Stewart, Janet E. Berrington, Nicholas D. Embleton, Gregory Young, Katherine E. Gregory, Misty Good, Arti Tandon, David Genetti, Tracy Warren, Ziv Bar-Joseph
2021 J jnl
Classification in biological networks with hypergraphlet kernels.
Bioinform.
Jose Lugo-Martinez, Daniel Zeiberg, Thomas Gaudelet, Noël Malod-Dognin, Natasa Przulj, Predrag Radivojac
2019 — conf
Integration of Heterogeneous Experimental Data Improves Global Map of Human Protein Complexes.
BCB
Jose Lugo-Martinez, Jörn Dengjel, Ziv Bar-Joseph, Robert F. Murphy
2018 J jnl
Ultra High-Dimensional Nonlinear Feature Selection for Big Biological Data.
IEEE Trans. Knowl. Data Eng.
Makoto Yamada, Jiliang Tang, Jose Lugo-Martinez, Ermin Hodzic, Raunak Shrestha, Avishek Saha, Hua Ouyang, Dawei Yin, Hiroshi Mamitsuka, Süleyman Cenk Sahinalp, Predrag Radivojac, Filippo Menczer, Yi Chang
2017 J jnl
Classification in biological networks with hypergraphlet kernels.
CoRR
Jose Lugo-Martinez, Predrag Radivojac
2016 J jnl
The Loss and Gain of Functional Amino Acid Residues Is a Common Mechanism Causing Human Inherited Disease.
PLoS Comput. Biol.
Jose Lugo-Martinez, Vikas Pejaver, Kymberleigh A. Pagel, Shantanu Jain, Matthew E. Mort, David N. Cooper, Sean D. Mooney, Predrag Radivojac
2014 J jnl
Extensive Error in the Number of Genes Inferred from Draft Genome Assemblies.
PLoS Comput. Biol.
James F. Denton, Jose Lugo-Martinez, Abraham E. Tucker, Daniel R. Schrider, Wesley C. Warren, Matthew W. Hahn
2014 J jnl
Generalized graphlet kernels for probabilistic inference in sparse graphs.
Netw. Sci.
Jose Lugo-Martinez, Predrag Radivojac
2010 A* conf
Conservation cores: reducing the energy of mature computations.
ASPLOS
Ganesh Venkatesh, Jack Sampson, Nathan Goulding, Saturnino Garcia, Vladyslav Bryksin, Jose Lugo-Martinez, Steven Swanson, Michael Bedford Taylor