Jose C. Nacher

23 papers C 1Journal 16Unranked 5
YearRankTypeTitle / Venue / Authors
2024 J jnl
Determining cellular lineage directed networks in hematopoiesis using single-cell transcriptomic data and volatility-constrained correlation.
Biosyst.
Tomoshiro Ochiai, Jose C. Nacher
2020 — conf
Measuring the Similarity of Proteomes using Grammar-based Compression via Domain Combinations.
BIOINFORMATICS
Morihiro Hayashida, Hitoshi Koyano, Jose C. Nacher
2019 — conf
Artificial Neural Network Approach to Prediction of Protein-RNA Residue-base Contacts.
BIOINFORMATICS
Morihiro Hayashida, Jose C. Nacher, Hitoshi Koyano
2019 J jnl
Convolutional neural network approach to lung cancer classification integrating protein interaction network and gene expression profiles.
J. Bioinform. Comput. Biol.
Teppei Matsubara, Tomoshiro Ochiai, Morihiro Hayashida, Tatsuya Akutsu, Jose C. Nacher
2018 J jnl
Analysis of Critical and Redundant Vertices in Controlling Directed Complex Networks Using Feedback Vertex Sets.
J. Comput. Biol.
Yu Bao, Morihiro Hayashida, Pengyu Liu, Masayuki Ishitsuka, Jose C. Nacher, Tatsuya Akutsu
2018 C conf
Convolutional Neural Network Approach to Lung Cancer Classification Integrating Protein Interaction Network and Gene Expression Profiles.
BIBE
Teppei Matsubara, Tomoshiro Ochiai, Morihiro Hayashida, Tatsuya Akutsu, Jose C. Nacher
2018 J jnl
ncRNA-disease association prediction based on sequence information and tripartite network.
BMC Syst. Biol.
Takuya Mori, Hayliang Ngouv, Morihiro Hayashida, Tatsuya Akutsu, Jose C. Nacher
2017 J jnl
Analytical solution for the size of the minimum dominating set in complex networks.
Int. J. Model. Simul. Sci. Comput.
Jose C. Nacher, Tomoshiro Ochiai
2016 J jnl
Predicting link directionality in gene regulation from gene expression profiles using volatility-constrained correlation.
Biosyst.
Tomoshiro Ochiai, Jose C. Nacher
2014 J jnl
Analysis of critical and redundant nodes in controlling directed and undirected complex networks using dominating sets.
J. Complex Networks
Jose C. Nacher, Tatsuya Akutsu
2013 — conf
Analysis on critical nodes in controlling complex networks using dominating sets.
SITIS
Jose C. Nacher, Tatsuya Akutsu
2013 J jnl
Community structure of non-coding RNA interaction network.
J. Integr. Bioinform.
Jose C. Nacher
2012 J jnl
Nonlinear response of gene expression to chemical perturbations: A noise-detector model and its predictions.
Biosyst.
Jose C. Nacher, Vladimir B. Ryabov
2012 J jnl
Protein complex prediction via improved verification methods using constrained domain-domain matching.
Int. J. Bioinform. Res. Appl.
Yang Zhao, Morihiro Hayashida, Jose C. Nacher, Hiroshi Nagamochi, Tatsuya Akutsu
2010 J jnl
Structural characterization and modeling of ncRNA-protein interactions.
Biosyst.
Jose C. Nacher, N. Araki
2010 J jnl
The role of internal duplication in the evolution of multi-domain proteins.
Biosyst.
Jose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu
2009 — conf
A Bipartite Graph Based Model of Protein Domain Networks.
Complex (1)
Jose C. Nacher, Tomoshiro Ochiai, Morihiro Hayashida, Tatsuya Akutsu
2009 J jnl
Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairs.
Biosyst.
Jose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu
2008 J jnl
Transcription and noise in negative feedback loops.
Biosyst.
Jose C. Nacher, Tomoshiro Ochiai
2007 J jnl
Correlation between structure and temperature in prokaryotic metabolic networks.
BMC Bioinform.
Kazuhiro Takemoto, Jose C. Nacher, Tatsuya Akutsu
2007 — ch.
Topological aspects of protein networks.
Emergent Intelligence of Networked Agents
Jose C. Nacher, Morihiro Hayashida, Tatsuya Akutsu
2006 — conf
Identification of metabolic units induced by environmental signals.
ISMB (Supplement of Bioinformatics)
Jose C. Nacher, Jean-Marc Schwartz, Minoru Kanehisa, Tatsuya Akutsu
2004 J jnl
Clustering under the line graph transformation: application to reaction network.
BMC Bioinform.
Jose C. Nacher, Nobuhisa Ueda, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu