Jorge Vieira

35 papers B 4Misc 10Journal 18Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
Towards a more accurate and reliable evaluation of machine learning protein-protein interaction prediction model performance in the presence of unavoidable dataset biases.
J. Integr. Bioinform.
Alba Nogueira-Rodríguez, Daniel Glez-Peña, Cristina P. Vieira, Jorge Vieira, Hugo López-Fernández
2024 J jnl
Analytic pulse technique for computational electromagnetics.
Comput. Phys. Commun.
Kale Weichman, Kyle G. Miller, Bernardo Malaca, Warren B. Mori, Jacob R. Pierce, Dillon W. Ramsey, Jorge Vieira, Marija Vranic, John P. Palastro
2024 J jnl
Auto-phylo v2 and auto-phylo-pipeliner: building advanced, flexible, and reusable pipelines for phylogenetic inferences, estimation of variability levels and identification of positively selected amino acid sites.
J. Integr. Bioinform.
Hugo López-Fernández, Miguel Pinto, Cristina P. Vieira, Pedro Duque, Miguel Reboiro-Jato, Jorge Vieira
2024 J jnl
Inferences on the evolution of the ascorbic acid synthesis pathway in insects using Phylogenetic Tree Collapser (PTC), a tool for the automated collapsing of phylogenetic trees using taxonomic information.
J. Integr. Bioinform.
Daniel Glez-Peña, Hugo López-Fernández, Pedro Duque, Cristina P. Vieira, Jorge Vieira
2024 J jnl
SEDA 2024 update: enhancing the SEquence DAtaset builder for seamless integration into automated data analysis pipelines.
BMC Bioinform.
Miguel Reboiro-Jato, Daniel Pérez-Rodríguez, Miguel José Da Silva, David Vila-Fernández, Cristina P. Vieira, Jorge Vieira, Hugo López-Fernández
2023 Misc conf
Auto-phylo: A Pipeline Maker for Phylogenetic Studies.
PACBB
Hugo López-Fernández, Miguel Pinto, Cristina P. Vieira, Pedro Duque, Miguel Reboiro-Jato, Jorge Vieira
2023 J jnl
On the identification of potential novel therapeutic targets for spinocerebellar ataxia type 1 (SCA1) neurodegenerative disease using EvoPPI3.
J. Integr. Bioinform.
André D. Sousa, Sara Rocha, Jorge Vieira, Miguel Reboiro-Jato, Hugo López-Fernández, Cristina P. Vieira
2023 J jnl
RaDiO: An efficient spatiotemporal radiation diagnostic for particle-in-cell codes.
Comput. Phys. Commun.
Miguel L. Pardal, A. Sainte-Marie, A. Reboul-Salze, Ricardo A. Fonseca, Jorge Vieira
2022 Misc conf
EvoPPI 2: A Web and Local Platform for the Comparison of Protein-Protein Interaction Data from Multiple Sources from the Same and Distinct Species.
PACBB
Miguel Reboiro-Jato, Jorge Vieira, Sara Rocha, André D. Sousa, Hugo López-Fernández, Cristina P. Vieira
2022 J jnl
SEDA: A Desktop Tool Suite for FASTA Files Processing.
IEEE ACM Trans. Comput. Biol. Bioinform.
Hugo López-Fernández, Pedro Duque, Noé Vázquez, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira
2022 J jnl
The AWAKE Run 2 Programme and Beyond.
Symmetry
Edda Gschwendtner, Konstantin Lotov, Patric Muggli, Matthew Wing, Riccardo Agnello, Claudia Christina Ahdida, Maria Carolina Amoedo Goncalves, Yanis Andrebe, Oznur Apsimon, Robert Apsimon, Jordan Matias Arnesano, Anna-Maria Bachmann, Diego Barrientos, Fabian Batsch, Vittorio Bencini, Michele Bergamaschi, Patrick Blanchard, Philip Nicholas Burrows, Birger Buttenschön, Allen Caldwell, James Chappell, Eric Chevallay, Moses Chung, David Andrew Cooke, Heiko Damerau, Can Davut, Gábor Demeter, Amos Christopher Dexter, Steffen Doebert, Francesa Ann Elverson, John Farmer, Ambrogio Fasoli, Valentin Fedosseev, Ricardo Fonseca, Ivo Furno, Spencer Gessner, Aleksandr Gorn, Eduardo Granados, Marcel Granetzny, Tim Graubner, Olaf Grulke, Eloise Daria Guran, Vasyl Hafych, Anthony Hartin, James Henderson, Mathias Hüther, Miklos Kedves, Fearghus Keeble, Vadim Khudiakov, Seong-Yeol Kim, Florian Kraus, Michel Krupa, Thibaut Lefevre, Linbo Liang, Shengli Liu, Nelson Lopes, Miguel Martinez Calderon, Stefano Mazzoni, David Medina Godoy, Joshua Moody, Kookjin Moon, Pablo Israel Morales Guzmán, Mariana Moreira, Tatiana Nechaeva, Elzbieta Nowak, Collette Pakuza, Harsha Panuganti, Ans Pardons, Kevin Pepitone, Aravinda Perera, Jan Pucek, Alexander Pukhov, Rebecca Louise Ramjiawan, Stephane Rey, Adam Scaachi, Oliver Schmitz, Eugenio Senes, J. Fernando A. da Silva, Luis Silva, Christine Stollberg, Alban Sublet, Catherine Swain, Athanasios Topaloudis, Nuno Torrado, Petr Tuev, Marlene Turner, Francesco Velotti, Livio Verra, Victor Verzilov, Jorge Vieira, Helmut Vincke, Martin Weidl, Carsten P. Welsch, Manfred Wendt, Peerawan Wiwattananon, Joseph Wolfenden, Benjamin Woolley, Samuel Wyler, Guoxing Xia, Vlada Yarygova, Michael Zepp, Giovanni Zevi Della Porta
2022 J jnl
Twisted Waves near a Plasma Cutoff.
Symmetry
José Tito Mendonça, Camilla Willim, Jorge Vieira
2021 Misc conf
The pegi3s Bioinformatics Docker Images Project.
PACBB
Hugo López-Fernández, Pedro Ferreira, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira
2020 Misc conf
Inferences on Mycobacterium Leprae Host Immune Response Escape and Antibiotic Resistance Using Genomic Data and GenomeFastScreen.
PACBB
Hugo López-Fernández, Cristina P. Vieira, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Jorge Vieira
2019 Misc conf
Inferring Positive Selection in Large Viral Datasets.
PACBB
Hugo López-Fernández, Pedro Duque, Noé Vázquez, Florentino Fdez-Riverola, Miguel Reboiro-Jato, Cristina P. Vieira, Jorge Vieira
2018 Misc conf
A Bioinformatics Protocol for Quickly Creating Large-Scale Phylogenetic Trees.
PACBB
Hugo López-Fernández, Pedro Duque, Sílvia Henriques, Noé Vázquez, Florentino Fdez-Riverola, Cristina P. Vieira, Miguel Reboiro-Jato, Jorge Vieira
2018 Misc conf
EvoPPI: A Web Application to Compare Protein-Protein Interactions (PPIs) from Different Databases and Species.
PACBB
Noé Vázquez, Sara Rocha, Hugo López-Fernández, André Torres, Rui Camacho, Florentino Fdez-Riverola, Jorge Vieira, Cristina P. Vieira, Miguel Reboiro-Jato
2017 Misc conf
Automated Collection and Sharing of Adaptive Amino Acid Changes Data.
PACBB
Noé Vázquez, Cristina P. Vieira, Bárbara S. R. Amorim, André Torres, Hugo López-Fernández, Florentino Fdez-Riverola, José L. R. Sousa, Miguel Reboiro-Jato, Jorge Vieira
2016 J jnl
Enabling Lorentz boosted frame particle-in-cell simulations of laser wakefield acceleration in quasi-3D geometry.
J. Comput. Phys.
Peicheng Yu, Xinlu Xu, Asher Davidson, Adam Tableman, Thamine Dalichaouch, Fei Li, Michael D. Meyers, Weiming An, Frank S. Tsung, Viktor K. Decyk, Frederico Fiuza, Jorge Vieira, Ricardo A. Fonseca, Wei Lu, Luís O. Silva, Warren B. Mori
2015 — conf
Demonstration of GIS web-based platform for experimentation supported by geosensors in a WSN.
exp.at
Alexandra Ribeiro, Jorge Vieira, Vitor Sousa, Alberto Cardoso
2015 J jnl
Elimination of the numerical Cerenkov instability for spectral EM-PIC codes.
Comput. Phys. Commun.
Peicheng Yu, Xinlu Xu, Viktor K. Decyk, Frederico Fiuza, Jorge Vieira, Frank S. Tsung, Ricardo A. Fonseca, Wei Lu, Luís O. Silva, Warren B. Mori
2015 J jnl
Implementation of a hybrid particle code with a PIC description in r-z and a gridless description in ϕ into OSIRIS.
J. Comput. Phys.
Adam Davidson, Adam Tableman, Weiming An, Frank S. Tsung, Wei Lu, Jorge Vieira, Ricardo A. Fonseca, Luís O. Silva, Warren B. Mori
2015 J jnl
Mitigation of numerical Cerenkov radiation and instability using a hybrid finite difference-FFT Maxwell solver and a local charge conserving current deposit.
Comput. Phys. Commun.
Peicheng Yu, Xinlu Xu, Adam Tableman, Viktor K. Decyk, Frank S. Tsung, Frederico Fiuza, Asher Davidson, Jorge Vieira, Ricardo A. Fonseca, Wei Lu, Luís O. Silva, Warren B. Mori
2014 J jnl
Modeling of laser wakefield acceleration in Lorentz boosted frame using EM-PIC code with spectral solver.
J. Comput. Phys.
Peicheng Yu, Xinlu Xu, Viktor K. Decyk, Weiming An, Jorge Vieira, Frank S. Tsung, Ricardo A. Fonseca, Wei Lu, Luís O. Silva, Warren B. Mori
2013 Misc conf
Boosting the Detection of Transposable Elements Using Machine Learning.
PACBB
Tiago Loureiro, Rui Camacho, Jorge Vieira, Nuno A. Fonseca
2013 J jnl
Improving the performance of Transposable Elements detection tools.
J. Integr. Bioinform.
Tiago Loureiro, Rui Camacho, Jorge Vieira, Nuno A. Fonseca
2013 J jnl
Numerical instability due to relativistic plasma drift in EM-PIC simulations.
Comput. Phys. Commun.
Xinlu Xu, Peicheng Yu, Samuel F. Martins, Frank S. Tsung, Viktor K. Decyk, Jorge Vieira, Ricardo A. Fonseca, Wei Lu, Luís O. Silva, Warren B. Mori
2012 J jnl
ADOPS - Automatic Detection Of Positively Selected Sites.
J. Integr. Bioinform.
David Reboiro-Jato, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Cristina P. Vieira, Nuno A. Fonseca, Jorge Vieira
2012 Misc conf
On the Development of a Pipeline for the Automatic Detection of Positively Selected Sites.
PACBB
David Reboiro-Jato, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Nuno A. Fonseca, Jorge Vieira
2009 — conf
Partitional Clustering of Protein Sequences - An Inductive Logic Programming Approach.
IWANN (2)
Nuno A. Fonseca, Vítor Santos Costa, Rui Camacho, Cristina P. Vieira, Jorge Vieira
2008 B conf
Efficient Data Distribution for DWS.
DaWaK
Raquel Almeida, Jorge Vieira, Marco Vieira, Henrique Madeira, Jorge Bernardino
2008 B conf
RAIN: Always on Data Warehousing.
DASFAA
Jorge Vieira, Marco Vieira, Marco Costa, Henrique Madeira
2008 B conf
Redundant Array of Inexpensive Nodes for DWS.
DASFAA
Jorge Vieira, Marco Vieira, Marco Costa, Henrique Madeira
2005 B conf
Efficient Compression of Text Attributes of Data Warehouse Dimensions.
DaWaK
Jorge Vieira, Jorge Bernardino, Henrique Madeira
2003 — conf
A middle layer for distributed data warehouses using the DWS-AQA technique.
JISBD
Marco Costa, Jorge Vieira, Jorge Bernardino, Pedro Furtado, Henrique Madeira