Jorge González-Domínguez

64 papers A 2C 3Misc 6Journal 46Unranked 7
YearRankTypeTitle / Venue / Authors
2025 J jnl
BetaGPU: Harnessing GPU power for parallelized beta distribution functions.
SoftwareX
Alejandro Fernández-Fraga, Jorge González-Domínguez, María J. Martín
2025 J jnl
Biclustering in bioinformatics using big data and High Performance Computing applications: challenges and perspectives, a review.
J. Supercomput.
Aurelio López-Fernández, Francisco Antonio Gómez Vela, Domingo S. Rodríguez-Baena, Fernando M. Delgado-Chaves, Jorge González-Domínguez
2024 Misc conf
Applying dynamic balancing to improve the performance of MPI parallel genomics applications.
SAC
Alejandro Fernández-Fraga, Jorge González-Domínguez, María J. Martín
2024 J jnl
BigDEC: A multi-algorithm Big Data tool based on the k-mer spectrum method for scalable short-read error correction.
Future Gener. Comput. Syst.
Roberto R. Expósito, Jorge González-Domínguez
2024 J jnl
CUDA acceleration of MI-based feature selection methods.
J. Parallel Distributed Comput.
Bieito Beceiro, Jorge González-Domínguez, Laura Morán-Fernández, Verónica Bolón-Canedo, Juan Touriño
2024 J jnl
PARamrfinder: detecting allele-specific DNA methylation on multicore clusters.
J. Supercomput.
Alejandro Fernández-Fraga, Jorge González-Domínguez, María J. Martín
2024 J jnl
bioScience: A new python science library for high-performance computing bioinformatics analytics.
SoftwareX
Aurelio López-Fernández, Francisco Antonio Gómez Vela, Jorge González-Domínguez, Parameshachari Bidare Divakarachari
2023 J jnl
PATO: genome-wide prediction of lncRNA-DNA triple helices.
Bioinform.
Iñaki Amatria-Barral, Jorge González-Domínguez, Juan Touriño
2023 J jnl
ParRADMeth: Identification of Differentially Methylated Regions on Multicore Clusters.
IEEE ACM Trans. Comput. Biol. Bioinform.
Alejandro Fernández-Fraga, Jorge González-Domínguez, Juan Touriño
2023 Misc conf
Parallel construction of RNA databases for extensive lncRNA-RNA interaction prediction.
SAC
Iñaki Amatria-Barral, Jorge González-Domínguez, Juan Touriño
2023 J jnl
pRIblast: A highly efficient parallel application for comprehensive lncRNA-RNA interaction prediction.
Future Gener. Comput. Syst.
Iñaki Amatria-Barral, Jorge González-Domínguez, Juan Touriño
2022 J jnl
A SIMD algorithm for the detection of epistatic interactions of any order.
CoRR
Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
2022 J jnl
A SIMD algorithm for the detection of epistatic interactions of any order.
Future Gener. Comput. Syst.
Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
2022 J jnl
Evaluation of Existing Methods for High-Order Epistasis Detection.
IEEE ACM Trans. Comput. Biol. Bioinform.
Christian Ponte-Fernández, Jorge González-Domínguez, Antonio Carvajal-Rodríguez, María J. Martín
2022 J jnl
Fiuncho: a program for any-order epistasis detection in CPU clusters.
CoRR
Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
2022 J jnl
Fiuncho: a program for any-order epistasis detection in CPU clusters.
J. Supercomput.
Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
2022 — conf
Generating penetrance tables of high-order epistasis models with PyToxo.
XoveTIC
Borja González-Seoane, Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
2022 J jnl
MPI-dot2dot: A parallel tool to find DNA tandem repeats on multicore clusters.
J. Supercomput.
Jorge González-Domínguez, José M. Martín-Martínez, Roberto R. Expósito
2022 J jnl
Parallel-FST: A feature selection library for multicore clusters.
J. Parallel Distributed Comput.
Bieito Beceiro, Jorge González-Domínguez, Juan Touriño
2022 J jnl
PyToxo: a Python tool for calculating penetrance tables of high-order epistasis models.
BMC Bioinform.
Borja González-Seoane, Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
2021 J jnl
ScalaParBiBit: scaling the binary biclustering in distributed-memory systems.
Clust. Comput.
Basilio B. Fraguela, Diego Andrade, Jorge González-Domínguez
2020 J jnl
CUDA-JMI: Acceleration of feature selection on heterogeneous systems.
Future Gener. Comput. Syst.
Jorge González-Domínguez, Roberto R. Expósito, Verónica Bolón-Canedo
2020 J jnl
Fast search of third-order epistatic interactions on CPU and GPU clusters.
Int. J. High Perform. Comput. Appl.
Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
2020 J jnl
SMusket: Spark-based DNA error correction on distributed-memory systems.
Future Gener. Comput. Syst.
Roberto R. Expósito, Jorge González-Domínguez, Juan Touriño
2020 J jnl
SeQual: Big Data Tool to Perform Quality Control and Data Preprocessing of Large NGS Datasets.
IEEE Access
Roberto R. Expósito, Roi Galego-Torreiro, Jorge González-Domínguez
2020 J jnl
Toxo: a library for calculating penetrance tables of high-order epistasis models.
BMC Bioinform.
Christian Ponte-Fernández, Jorge González-Domínguez, Antonio Carvajal-Rodríguez, María J. Martín
2019 J jnl
Accelerating binary biclustering on platforms with CUDA-enabled GPUs.
Inf. Sci.
Jorge González-Domínguez, Roberto R. Expósito
2019 — conf
Analysis of the Construction of Similarity Matrices on Multi-core and Many-Core Platforms Using Different Similarity Metrics.
ICCS (1)
Uxía Casal, Jorge González-Domínguez, María J. Martín
2019 J jnl
Parallel feature selection for distributed-memory clusters.
Inf. Sci.
Jorge González-Domínguez, Verónica Bolón-Canedo, Borja Freire, Juan Touriño
2018 J jnl
MPIGeneNet: Parallel Calculation of Gene Co-Expression Networks on Multicore Clusters.
IEEE ACM Trans. Comput. Biol. Bioinform.
Jorge González-Domínguez, María J. Martín
2018 J jnl
parSRA: A framework for the parallel execution of short read aligners on compute clusters.
J. Comput. Sci.
Jorge González-Domínguez, Christian Hundt, Bertil Schmidt
2017 — conf
Evaluation of OpenMP SIMD Directives on Xeon Phi Coprocessors.
HPCS
Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín
2017 Misc conf
Fast Parallel Construction of Correlation Similarity Matrices for Gene Co-Expression Networks on Multicore Clusters.
ICCS
Jorge González-Domínguez, María J. Martín
2017 J jnl
MarDRe: efficient MapReduce-based removal of duplicate DNA reads in the cloud.
Bioinform.
Roberto R. Expósito, Jorge Veiga, Jorge González-Domínguez, Juan Touriño
2017 J jnl
Parallel definition of tear film maps on distributed-memory clusters for the support of dry eye diagnosis.
Comput. Methods Programs Biomed.
Jorge González-Domínguez, Beatriz Remeseiro, María J. Martín
2017 J jnl
Speed and accuracy improvement of higher-order epistasis detection on CUDA-enabled GPUs.
Clust. Comput.
Daniel Jünger, Christian Hundt, Jorge González-Domínguez, Bertil Schmidt
2016 Misc conf
Acceleration of Tear Film Map Definition on Multicore Systems.
ICCS
Jorge González-Domínguez, Beatriz Remeseiro, María J. Martín
2016 — conf
Combining GPU and FPGA technology for efficient exhaustive interaction analysis in GWAS.
ASAP
Jan Christian Kässens, Lars Wienbrandt, Manfred Schimmler, Jorge González-Domínguez, Bertil Schmidt
2016 J jnl
MSAProbs-MPI: parallel multiple sequence aligner for distributed-memory systems.
Bioinform.
Jorge González-Domínguez, Yongchao Liu, Juan Touriño, Bertil Schmidt
2016 J jnl
Multithreaded and Spark parallelization of feature selection filters.
J. Comput. Sci.
Carlos Eiras-Franco, Verónica Bolón-Canedo, Sabela Ramos, Jorge González-Domínguez, Amparo Alonso-Betanzos, Juan Touriño
2016 J jnl
ParDRe: faster parallel duplicated reads removal tool for sequencing studies.
Bioinform.
Jorge González-Domínguez, Bertil Schmidt
2016 J jnl
Parallel Pairwise Epistasis Detection on Heterogeneous Computing Architectures.
IEEE Trans. Parallel Distributed Syst.
Jorge González-Domínguez, Sabela Ramos, Juan Touriño, Bertil Schmidt
2016 — conf
Ultra-Fast Detection of Higher-Order Epistatic Interactions on GPUs.
Euro-Par Workshops
Daniel Jünger, Christian Hundt, Jorge González-Domínguez, Bertil Schmidt
2015 J jnl
GPU-accelerated exhaustive search for third-order epistatic interactions in case-control studies.
J. Comput. Sci.
Jorge González-Domínguez, Bertil Schmidt
2015 J jnl
High-speed exhaustive 3-locus interaction epistasis analysis on FPGAs.
J. Comput. Sci.
Jan Christian Kässens, Lars Wienbrandt, Jorge González-Domínguez, Bertil Schmidt, Manfred Schimmler
2015 J jnl
Large-scale genome-wide association studies on a GPU cluster using a CUDA-accelerated PGAS programming model.
Int. J. High Perform. Comput. Appl.
Jorge González-Domínguez, Jan Christian Kässens, Lars Wienbrandt, Bertil Schmidt
2015 J jnl
Parallelizing Epistasis Detection in GWAS on FPGA and GPU-Accelerated Computing Systems.
IEEE ACM Trans. Comput. Biol. Bioinform.
Jorge González-Domínguez, Lars Wienbrandt, Jan Christian Kässens, David Ellinghaus, Manfred Schimmler, Bertil Schmidt
2014 J jnl
A 2D algorithm with asymmetric workload for the UPC conjugate gradient method.
J. Supercomput.
Jorge González-Domínguez, Osni A. Marques, María J. Martín, Juan Touriño
2014 C conf
Analyzing the Energy Efficiency of the Memory Subsystem in Multicore Processors.
ISPA
Sandra Catalán, Jorge González-Domínguez, Rafael Mayo, Enrique S. Quintana-Ortí
2014 J jnl
Constructing Performance Models for Dense Linear Algebra Algorithms on Cray XE Systems.
CoRR
Jorge González-Domínguez, Evangelos Georganas, Yili Zheng, María J. Martín
2014 Misc conf
FPGA-based Acceleration of Detecting Statistical Epistasis in GWAS.
ICCS
Lars Wienbrandt, Jan Christian Kässens, Jorge González-Domínguez, Bertil Schmidt, David Ellinghaus, Manfred Schimmler
2014 — conf
Hybrid CPU/GPU Acceleration of Detection of 2-SNP Epistatic Interactions in GWAS.
Euro-Par
Jorge González-Domínguez, Bertil Schmidt, Jan Christian Kässens, Lars Wienbrandt
2014 J jnl
Scalable PGAS collective operations in NUMA clusters.
Clust. Comput.
Damián A. Mallón, Guillermo L. Taboada, Carlos Teijeiro, Jorge González-Domínguez, Andrés Gómez, Brian Wibecan
2014 C conf
UPC++ for bioinformatics: A case study using genome-wide association studies.
CLUSTER
Jan Christian Kässens, Jorge González-Domínguez, Lars Wienbrandt, Bertil Schmidt
2013 J jnl
Analysis of I/O Performance on an Amazon EC2 Cluster Compute and High I/O Platform.
J. Grid Comput.
Roberto R. Expósito, Guillermo L. Taboada, Sabela Ramos, Jorge González-Domínguez, Juan Touriño, Ramon Doallo
2013 J jnl
Performance evaluation of sparse matrix products in UPC.
J. Supercomput.
Jorge González-Domínguez, Óscar García-López, Guillermo L. Taboada, María J. Martín, Juan Touriño
2013 J jnl
The Servet 3.0 benchmark suite: Characterization of network performance degradation.
Comput. Electr. Eng.
Jorge González-Domínguez, María J. Martín, Guillermo L. Taboada, Roberto R. Expósito, Juan Touriño
2012 J jnl
Automatic mapping of parallel applications on multicore architectures using the Servet benchmark suite.
Comput. Electr. Eng.
Jorge González-Domínguez, Guillermo L. Taboada, Basilio B. Fraguela, María J. Martín, Juan Touriño
2012 A conf
Communication avoiding and overlapping for numerical linear algebra.
SC
Evangelos Georganas, Jorge González-Domínguez, Edgar Solomonik, Yili Zheng, Juan Touriño, Katherine A. Yelick
2012 C conf
Design and Performance Issues of Cholesky and LU Solvers Using UPCBLAS.
ISPA
Jorge González-Domínguez, Osni A. Marques, María J. Martín, Guillermo L. Taboada, Juan Touriño
2012 J jnl
UPCBLAS: a library for parallel matrix computations in Unified Parallel C.
Concurr. Comput. Pract. Exp.
Jorge González-Domínguez, María J. Martín, Guillermo L. Taboada, Juan Touriño, Ramon Doallo, Damián A. Mallón, Brian Wibecan
2011 Misc conf
Dense Triangular Solvers on Multicore Clusters using UPC.
ICCS
Jorge González-Domínguez, María J. Martín, Guillermo L. Taboada, Juan Touriño
2010 A conf
Servet: A benchmark suite for autotuning on multicore clusters.
IPDPS
Jorge González-Domínguez, Guillermo L. Taboada, Basilio B. Fraguela, María J. Martín, Juan Touriño
2009 — conf
A Parallel Numerical Library for UPC.
Euro-Par
Jorge González-Domínguez, María J. Martín, Guillermo L. Taboada, Juan Touriño, Ramon Doallo, Andrés Gómez