Joram M. Posma

17 papers A 1Journal 12Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
Automatic genetic phenotype normalization from dysmorphology physical examinations: an overview of the BioCreative VIII - Task 3 competition.
Database J. Biol. Databases Curation
Davy Weissenbacher, Xinwei Zhao, Jessica R. C. Priestley, Katherine M. Szigety, Sarah F. Schmidt, Karen O'Connor, Ekin Soysal, Kirk Roberts, Jiewei Qi, Ling Luo, Zhihao Yang, Hongfei Lin, Hajung Kim, Chanhwi Kim, Jiwoong Sohn, Tim Beck, Marek Rei, Sunkyu Kim, T. Ian Simpson, Joram M. Posma, Antoine Lain, Mujeen Sung, Jaewoo Kang, Areej Alhassan, Viktor Schlegel, Monira Aloud, Riza Batista-Navarro, Goran Nenadic, Ying-Jia Lin, Zhi-Quan Feng, Hung-Yu Kao, Ian M. Campbell, Graciela Gonzalez-Hernandez
2025 J jnl
DermaSynth: Rich Synthetic Image-Text Pairs Using Open Access Dermatology Datasets.
CoRR
Abdurrahim Yilmaz, Furkan Yuceyalcin, Ece Gokyayla, Donghee Choi, Ozan Erdem Ali Anil Demircali, Rahmetullah Varol, Ufuk Gorkem Kirabali, Gulsum Gencoglan, Joram M. Posma, Burak Temelkuran
2025 A conf
Hybrid Motion Control of a Fiber-based Soft Robotic Instrument for Minimally Invasive Surgery.
IROS
Ziqi Yang, Libaihe Tian, Yuchen Xiang, Joram M. Posma, Burak Temelkuran
2025 J jnl
Improving drug-induced liver injury prediction using graph neural networks with augmented graph features from molecular optimisation.
J. Cheminformatics
Taeyeub Lee, Joram M. Posma
2025 J jnl
KU AIGEN ICL EDI@BC8 Track 3: Advancing Phenotype Named Entity Recognition and Normalization for Dysmorphology Physical Examination Reports.
CoRR
Hajung Kim, Chanhwi Kim, Jiwoong Sohn, Tim Beck, Marek Rei, Sunkyu Kim, T. Ian Simpson, Joram M. Posma, Antoine Lain, Mujeen Sung, Jaewoo Kang
2025 J jnl
MedSR-Impact: Transformer-Based Super-Resolution for Lung CT Segmentation, Radiomics, Classification, and Prognosis.
CoRR
Marc Boubnovski Martell, Kristofer Linton-Reid, Mitchell Chen, Sumeet Hindocha, Benjamin Hunter, Marco A. Calzado, Richard Lee, Joram M. Posma, Eric O. Aboagye
2025 — conf
Multilingual and Nested Biomedical Named Entity Normalization via Candidate Retrieval and Lightweight Large Language Model Disambiguation.
CLEF (Working Notes)
Antoine D. Lain, Chaeeun Lee, Simona E. Doneva, Maria Juliana Rodriguez-Cubillos, Elisa Castagnari, T. Ian Simpson, Joram M. Posma
2025 — conf
Understanding Gut-Brain Interplay in Scientific Literature: A Hybrid Approach from Classification to Generative LLM Reasoning.
CLEF (Working Notes)
Chaeeun Lee, Simona E. Doneva, Maria Juliana Rodriguez-Cubillos, Elisa Castagnari, Antoine D. Lain, Joram M. Posma, T. Ian Simpson
2024 — conf
Comparative Analyses of Multilingual Drug Entity Recognition Systems for Clinical Case Reports In Cardiology.
CLEF (Working Notes)
Chaeeun Lee, T. Ian Simpson, Joram M. Posma, Antoine D. Lain
2024 J jnl
LAVASET: Latent Variable Stochastic Ensemble of Trees. An ensemble method for correlated datasets with spatial, spectral, and temporal dependencies.
Bioinform.
Melpomeni Kasapi, Kexin Xu, Timothy M. D. Ebbels, Declan P. O'Regan, James S. Ware, Joram M. Posma
2022 J jnl
Auto-CORPus: A Natural Language Processing Tool for Standardizing and Reusing Biomedical Literature.
Frontiers Digit. Health
Tim Beck, Tom Shorter, Yan Hu, Zhuoyu Li, Shujian Sun, Casiana M. Popovici, Nicholas A. R. McQuibban, Filip Makraduli, Cheng S. Yeung, Thomas Rowlands, Joram M. Posma
2021 J jnl
Development of a Multi-Task Learning V-Net for Pulmonary Lobar Segmentation on Computed Tomography and Application to Diseased Lungs.
CoRR
Marc Boubnovski Martell, Mitchell Chen, Kristofer Linton-Reid, Joram M. Posma, Susan J. Copley, Eric O. Aboagye
2019 — ch.
Metabolic Profiling.
Encyclopedia of Bioinformatics and Computational Biology (2)
Joram M. Posma
2019 J jnl
pJRES Binning Algorithm (JBA): a new method to facilitate the recovery of metabolic information from pJRES 1H NMR spectra.
Bioinform.
Andrea Rodriguez-Martinez, Rafael Ayala, Joram M. Posma, Nikita Harvey, Beatriz Jiménez, Kazuhiro Sonomura, Taka-Aki Sato, Fumihiko Matsuda, Pierre A. Zalloua, Dominique Gauguier, Jeremy K. Nicholson, Marc-Emmanuel Dumas
2018 J jnl
MWASTools: an R/bioconductor package for metabolome-wide association studies.
Bioinform.
Andrea Rodriguez-Martinez, Joram M. Posma, Rafael Ayala, Ana Luísa Neves, Maryam Anwar, Enrico Petretto, Costanza Emanueli, Dominique Gauguier, Jeremy K. Nicholson, Marc-Emmanuel Dumas
2017 J jnl
MetaboSignal: a network-based approach for topological analysis of metabotype regulation via metabolic and signaling pathways.
Bioinform.
Andrea Rodriguez-Martinez, Rafael Ayala, Joram M. Posma, Ana Luísa Neves, Dominique Gauguier, Jeremy K. Nicholson, Marc-Emmanuel Dumas
2014 J jnl
MetaboNetworks, an interactive Matlab-based toolbox for creating, customizing and exploring sub-networks from KEGG.
Bioinform.
Joram M. Posma, Steven L. Robinette, Elaine Holmes, Jeremy K. Nicholson