Jooyoung Lee

23 papers B 1Journal 21Unranked 1
YearRankTypeTitle / Venue / Authors
2023 J jnl
Application of conformational space annealing to the protein structure modeling using cryo-EM maps.
J. Comput. Chem.
Jimin Park, InSuk Joung, Keehyoung Joo, Jooyoung Lee
2020 J jnl
Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13.
J. Chem. Inf. Model.
Agnieszka S. Karczynska, Karolina Zieba, Urszula Uciechowska, Magdalena A. Mozolewska, Pawel Krupa, Emilia A. Lubecka, Agnieszka G. Lipska, Celina Sikorska, Sergey A. Samsonov, Adam K. Sieradzan, Artur Gieldon, Adam Liwo, Rafal Slusarz, Magdalena Slusarz, Jooyoung Lee, Keehyoung Joo, Cezary Czaplewski
2018 J jnl
Conformational Space Annealing explained: A general optimization algorithm, with diverse applications.
Comput. Phys. Commun.
InSuk Joung, Jong Yun Kim, Steven P. Gross, Keehyoung Joo, Jooyoung Lee
2017 J jnl
Ergodicity and model quality in template-restrained canonical and temperature/Hamiltonian replica exchange coarse-grained molecular dynamics simulations of proteins.
J. Comput. Chem.
Agnieszka S. Karczynska, Cezary Czaplewski, Pawel Krupa, Magdalena A. Mozolewska, Keehyoung Joo, Jooyoung Lee, Adam Liwo
2017 J jnl
Protein Loop Structure Prediction Using Conformational Space Annealing.
J. Chem. Inf. Model.
Seungryong Heo, Juyong Lee, Keehyoung Joo, Hang-Cheol Shin, Jooyoung Lee
2016 J jnl
Ab initio materials design using conformational space annealing and its application to searching for direct band gap silicon crystals.
Comput. Phys. Commun.
In-Ho Lee, Young Jun Oh, Sunghyun Kim, Jooyoung Lee, Kee Joo Chang
2016 J jnl
Link community detection through global optimization and the inverse resolution limit of partition density.
CoRR
Juyong Lee, Zhong-Yuan Zhang, Jooyoung Lee, Bernard R. Brooks, Yong-Yeol Ahn
2016 J jnl
Use of Restraints from Consensus Fragments of Multiple Server Models To Enhance Protein-Structure Prediction Capability of the UNRES Force Field.
J. Chem. Inf. Model.
Magdalena A. Mozolewska, Pawel Krupa, Bartlomiej Zaborowski, Adam Liwo, Jooyoung Lee, Keehyoung Joo, Cezary Czaplewski
2015 J jnl
Prediction of Protein Structure by Template-Based Modeling Combined with the UNRES Force Field.
J. Chem. Inf. Model.
Pawel Krupa, Magdalena A. Mozolewska, Keehyoung Joo, Jooyoung Lee, Cezary Czaplewski, Adam Liwo
2015 J jnl
Sigma-RF: prediction of the variability of spatial restraints in template-based modeling by random forest.
BMC Bioinform.
Juyong Lee, Kiho Lee, InSuk Joung, Keehyoung Joo, Bernard R. Brooks, Jooyoung Lee
2015 — conf
Structure-based protein folding type classification and folding rate prediction.
BIBM
Balachandran Manavalan, Kunihiro Kuwajima, InSuk Joung, Jooyoung Lee
2014 J jnl
Subgrouping Automata: Automatic sequence subgrouping using phylogenetic tree-based optimum subgrouping algorithm.
Comput. Biol. Chem.
Joo-Hyun Seo, Jihyang Park, Eun-Mi Kim, Juhan Kim, Keehyoung Joo, Jooyoung Lee, Byung-Gee Kim
2012 J jnl
Extraction of hidden information by efficient community detection in networks
CoRR
Juyong Lee, Steven P. Gross, Jooyoung Lee
2012 J jnl
Mod-CSA: Modularity optimization by conformational space annealing
CoRR
Juyong Lee, Steven P. Gross, Jooyoung Lee
2011 J jnl
LigDockCSA: Protein-ligand docking using conformational space annealing.
J. Comput. Chem.
Woong-Hee Shin, Lim Heo, Juyong Lee, Junsu Ko, Chaok Seok, Jooyoung Lee
2010 J jnl
Dynamic folding pathway models of the villin headpiece subdomain (HP-36) structure.
J. Comput. Chem.
In-Ho Lee, Seung-Yeon Kim, Jooyoung Lee
2008 J jnl
Re-examination of structure optimization of off-lattice protein AB models by conformational space annealing.
J. Comput. Chem.
Jinwoo Lee, Keehyoung Joo, Seung-Yeon Kim, Jooyoung Lee
2006 J jnl
Application of the multiensemble sampling to the equilibrium folding of proteins.
Bioinform.
Hyeon S. Son, Seung-Yeon Kim, Jooyoung Lee, Kyu-Kwang Han
2005 J jnl
An efficient molecular docking using conformational space annealing.
J. Comput. Chem.
Kyoungrim Lee, Cezary Czaplewski, Seung-Yeon Kim, Jooyoung Lee
2002 J jnl
Evolution of physics-based methodology for exploring the conformational energy landscape of proteins.
J. Comput. Chem.
Harold A. Scheraga, Jaroslaw Pillardy, Adam Liwo, Jooyoung Lee, Cezary Czaplewski, Daniel R. Ripoll, William J. Wedemeyer, Yelena A. Arnautova
2000 B conf
UNRES: a united-residue force field for energy-based prediction of protein structure - orgin and significance of multibody terms.
RECOMB
Adam Liwo, Jaroslaw Pillardy, Cezary Czaplewski, Jooyoung Lee, Daniel R. Ripoll, Malgorzata Groth, Sylwia Rodziewicz-Motowidlo, Rajmund Kazmierkiewicz, Ryszard J. Wawak, Stanislaw Oldziej, Harold A. Scheraga
1999 J jnl
Surmounting the Multiple-Minima Problem in Protein Folding.
J. Glob. Optim.
Harold A. Scheraga, Jooyoung Lee, Jaroslaw Pillardy, Yuan-Jie Ye, Adam Liwo, Daniel R. Ripoll
1997 J jnl
New optimization method for conformational energy calculations on polypeptides: Conformational space annealing.
J. Comput. Chem.
Jooyoung Lee, Harold A. Scheraga, Shelly Rackovsky