Jonathan Schug

14 papers A 1Misc 1Journal 10Unranked 2
YearRankTypeTitle / Venue / Authors
2018 J jnl
Defiant: (DMRs: easy, fast, identification and ANnoTation) identifies differentially Methylated regions from iron-deficient rat hippocampus.
BMC Bioinform.
David E. Condon, Phu V. Tran, Yu-Chin Lien, Jonathan Schug, Michael K. Georgieff, Rebecca A. Simmons, Kyoung-Jae Won
2011 J jnl
Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).
Bioinform.
Gregory R. Grant, Michael H. Farkas, Angel D. Pizarro, Nicholas F. Lahens, Jonathan Schug, Brian P. Brunk, Christian J. Stoeckert Jr., John B. Hogenesch, Eric A. Pierce
2011 J jnl
Mitochondrial Genome Sequence Analysis: A custom bioinformatics pipeline substantially improves Affymetrix MitoChip v2.0 call rate and accuracy.
BMC Bioinform.
Hongbo M. Xie, Juan C. Perin, Theodore G. Schurr, Matthew C. Dulik, Sergey I. Zhadanov, Joseph A. Baur, Michael P. King, Emily Place, Colleen Clarke, Michael Grauer, Jonathan Schug, Avni Santani, Anthony Albano, Cecilia Kim, Vincent Procaccio, Hakon Hakonarson, Xiaowu Gai, Marni J. Falk
2011 J jnl
Tissue-specific regulation of mouse MicroRNA genes in endoderm-derived tissues.
Nucleic Acids Res.
Yan Gao, Jonathan Schug, Lindsay B. McKenna, John Le Lay, Klaus H. Kaestner, Linda E. Greenbaum
2007 — conf
Data Integration and Pattern-Finding in Biological Sequence with TESS's Annotation Grammar and Extraction Language (AnGEL).
DILS
Jonathan Schug, Max Mintz, Christian J. Stoeckert Jr.
2007 J jnl
EPConDB: a web resource for gene expression related to pancreatic development, beta-cell function and diabetes.
Nucleic Acids Res.
Joan M. Mazzarelli, John Brestelli, Regina K. Gorski, Junmin Liu, Elisabetta Manduchi, Deborah F. Pinney, Jonathan Schug, Peter White, Klaus H. Kaestner, Christian J. Stoeckert Jr.
2003 J jnl
PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data.
Nucleic Acids Res.
Amit Bahl, Brian P. Brunk, Jonathan Crabtree, Martin J. Fraunholz, Bindu Gajria, Gregory R. Grant, Hagai Ginsburg, Dinesh Gupta, Jessica C. Kissinger, Philip Labo, Li Li, Matthew D. Mailman, Arthur J. Milgram, David S. Pearson, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr., Patricia L. Whetzel
2002 J jnl
Modeling and analyzing biomolecular networks.
Comput. Sci. Eng.
Rajeev Alur, Calin Belta, Vijay Kumar, Max Mintz, George J. Pappas, Harvey Rubin, Jonathan Schug
2002 J jnl
PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished).
Nucleic Acids Res.
Amit Bahl, Brian P. Brunk, Ross L. Coppel, Jonathan Crabtree, Sharon J. Diskin, Martin J. Fraunholz, Gregory R. Grant, Dinesh Gupta, Robert L. Huestis, Jessica C. Kissinger, Philip Labo, Li Li, Shannon K. McWeeney, Arthur J. Milgram, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr.
2002 Misc conf
Visual Programming for Modeling and Simulation of Biomolecular Regulatory Networks.
HiPC
Rajeev Alur, Calin Belta, Franjo Ivancic, Vijay Kumar, Harvey Rubin, Jonathan Schug, Oleg Sokolsky, Jonathan Webb
2001 J jnl
A relational schema for both array-based and SAGE gene expression experiments.
Bioinform.
Christian J. Stoeckert Jr., Angel D. Pizarro, Elisabetta Manduchi, M. Gibson, Brian P. Brunk, Jonathan Crabtree, Jonathan Schug, Shai Shen-Orr, G. Christian Overton
2001 J jnl
K2/Kleisli and GUS: Experiments in integrated access to genomic data sources.
IBM Syst. J.
Susan B. Davidson, Jonathan Crabtree, Brian P. Brunk, Jonathan Schug, Val Tannen, G. Christian Overton, Christian J. Stoeckert Jr.
2001 — conf
Stability and reachability analysis of a hybrid model of luminescence in the marine bacterium Vibrio fischeri.
CDC
Calin Belta, Jonathan Schug, Thao Dang, Vijay Kumar, George J. Pappas, Harvey Rubin, Paul Dunlap
1997 A conf
Modeling Transcription Factor Binding Sites with Gibbs Sampling and Minimum Description Length Encoding.
ISMB
Jonathan Schug, G. Christian Overton