Jonathan R. Polimeni

68 papers Misc 1Journal 60Unranked 6

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	Biophysical Modeling of Intra-Voxel Incoherent Motion (IVIM) MRI Based on Realistic Cerebral Microvascular Anatomy and Dynamics in Mouse and Human Brain. CDMRI@MICCAI Grant Hartung, Zhangxuan Hu, Divya Varadarajan, Martijn A. Cloos, Dominik Schillinger, Jonathan R. Polimeni
2024	J	`jnl`	Mesoscale Brain Mapping: Bridging Scales and Modalities in Neuroimaging - A Symposium Review. Neuroinformatics Joshua K. Marchant, Natalie G. Ferris, Diana Grass, Magdelena S. Allen, Vivek Gopalakrishnan, Mark D. Olchanyi, Devang Sehgal, Maxina Sheft, Amelia Strom, Berkin Bilgic, Brian L. Edlow, Elizabeth M. C. Hillman, Meher R. Juttukonda, Laura Lewis, Shahin Nasr, Aapo Nummenmaa, Jonathan R. Polimeni, Roger B. H. Tootell, Lawrence L. Wald, Hui Wang, Anastasia Yendiki, Susie Yi Huang, Bruce R. Rosen, Randy L. Gollub
2023	J	`jnl`	Diffusion MRI data analysis assisted by deep learning synthesized anatomical images (DeepAnat). Medical Image Anal. Ziyu Li, Qiuyun Fan, Berkin Bilgic, Guangzhi Wang, Wenchuan Wu, Jonathan R. Polimeni, Karla L. Miller, Susie Yi Huang, Qiyuan Tian
2022	J	`jnl`	SDnDTI: Self-supervised deep learning-based denoising for diffusion tensor MRI. NeuroImage Qiyuan Tian, Ziyu Li, Qiuyun Fan, Jonathan R. Polimeni, Berkin Bilgic, David H. Salat, Susie Yi Huang
2022	J	`jnl`	Slice-direction geometric distortion evaluation and correction with reversed slice-select gradient acquisitions. NeuroImage Anna I. Blazejewska, Thomas Witzel, Jesper L. R. Andersson, Lawrence L. Wald, Jonathan R. Polimeni
2021	J	`jnl`	Ground-truth "resting-state" signal provides data-driven estimation and correction for scanner distortion of fMRI time-series dynamics. NeuroImage Rajat Kumar, Liang Tan, Alan Kriegstein, Andrew Lithen, Jonathan R. Polimeni, Lilianne R. Mujica-Parodi, Helmut H. Strey
2021	J	`jnl`	Improved cortical surface reconstruction using sub-millimeter resolution MPRAGE by image denoising. NeuroImage Qiyuan Tian, Natalia Zaretskaya, Qiuyun Fan, Chanon Ngamsombat, Berkin Bilgic, Jonathan R. Polimeni, Susie Yi Huang
2021	J	`jnl`	Investigating mechanisms of fast BOLD responses: The effects of stimulus intensity and of spatial heterogeneity of hemodynamics. NeuroImage Jingyuan E. Chen, Gary H. Glover, Nina E. Fultz, Bruce R. Rosen, Jonathan R. Polimeni, Laura D. Lewis
2021	J	`jnl`	SDnDTI: Self-supervised deep learning-based denoising for diffusion tensor MRI. CoRR Qiyuan Tian, Ziyu Li, Qiuyun Fan, Jonathan R. Polimeni, Berkin Bilgic, David H. Salat, Susie Yi Huang
2021	J	`jnl`	SRDTI: Deep learning-based super-resolution for diffusion tensor MRI. CoRR Qiyuan Tian, Ziyu Li, Qiuyun Fan, Chanon Ngamsombat, Yuxin Hu, Congyu Liao, Fuyixue Wang, Kawin Setsompop, Jonathan R. Polimeni, Berkin Bilgic, Susie Yi Huang
2021	J	`jnl`	Simultaneous pure T NeuroImage Fuyixue Wang, Zijing Dong, Lawrence L. Wald, Jonathan R. Polimeni, Kawin Setsompop
2020	J	`jnl`	DeepDTI: High-fidelity six-direction diffusion tensor imaging using deep learning. NeuroImage Qiyuan Tian, Berkin Bilgic, Qiuyun Fan, Congyu Liao, Chanon Ngamsombat, Yuxin Hu, Thomas Witzel, Kawin Setsompop, Jonathan R. Polimeni, Susie Yi Huang
2020	J	`jnl`	Eye-selective fMRI activity in human primary visual cortex: Comparison between 3 T and 9.4 T, and effects across cortical depth. NeuroImage Natalia Zaretskaya, Jonas Bause, Jonathan R. Polimeni, Pablo R. Grassi, Klaus Scheffler, Andreas M. Bartels
2020	J	`jnl`	Impact of prospective motion correction, distortion correction methods and large vein bias on the spatial accuracy of cortical laminar fMRI at 9.4 Tesla. NeuroImage Jonas Bause, Jonathan R. Polimeni, Johannes Stelzer, Myung-Ho In, Philipp Ehses, Pablo Kraemer-Fernandez, Ali Aghaeifar, Eric Lacosse, Rolf Pohmann, Klaus Scheffler
2020	J	`jnl`	Resting-state "physiological networks". NeuroImage Jingyuan E. Chen, Laura D. Lewis, Catie Chang, Qiyuan Tian, Nina E. Fultz, Ned A. Ohringer, Bruce R. Rosen, Jonathan R. Polimeni
2019	J	`jnl`	Dependence of resting-state fMRI fluctuation amplitudes on cerebral cortical orientation relative to the direction of B0 and anatomical axes. NeuroImage Olivia Viessmann, Klaus Scheffler, Marta Bianciardi, Lawrence L. Wald, Jonathan R. Polimeni
2019	J	`jnl`	Intracortical smoothing of small-voxel fMRI data can provide increased detection power without spatial resolution losses compared to conventional large-voxel fMRI data. NeuroImage Anna I. Blazejewska, Bruce Fischl, Lawrence L. Wald, Jonathan R. Polimeni
2019	J	`jnl`	Laminar (f)MRI: A short history and future prospects. NeuroImage David G. Norris, Jonathan R. Polimeni
2019	J	`jnl`	On the analysis of rapidly sampled fMRI data. NeuroImage Jingyuan E. Chen, Jonathan R. Polimeni, Saskia Bollmann, Gary H. Glover
2018	J	`jnl`	Advantages of cortical surface reconstruction using submillimeter 7 T MEMPRAGE. NeuroImage Natalia Zaretskaya, Bruce Fischl, Martin Reuter, Ville Renvall, Jonathan R. Polimeni
2018	J	`jnl`	Analysis strategies for high-resolution UHF-fMRI data. NeuroImage Jonathan R. Polimeni, Ville Renvall, Natalia Zaretskaya, Bruce Fischl
2018	J	`jnl`	Challenges and opportunities for brainstem neuroimaging with ultrahigh field MRI. NeuroImage Roberta Sclocco, Florian Beissner, Marta Bianciardi, Jonathan R. Polimeni, Vitaly Napadow
2018	J	`jnl`	Characterizing Signals Within Lesions and Mapping Brain Network Connectivity After Traumatic Axonal Injury: A 7 Tesla Resting-State FMRI Study. Brain Connect. Seul Lee, Jonathan R. Polimeni, Collin M. Price, Brian L. Edlow, Jennifer A. McNab
2018	J	`jnl`	Highly Accelerated Multishot EPI through Synergistic Combination of Machine Learning and Joint Reconstruction. CoRR Berkin Bilgic, Itthi Chatnuntawech, Mary Kate Manhard, Qiyuan Tian, Congyu Liao, Stephen F. Cauley, Susie Yi Huang, Jonathan R. Polimeni, Lawrence L. Wald, Kawin Setsompop
2018	J	`jnl`	Neuroimaging with ultra-high field MRI: Present and future. NeuroImage Jonathan R. Polimeni, Kâmil Uludag
2018	J	`jnl`	Relative latency and temporal variability of hemodynamic responses at the human primary visual cortex. NeuroImage Fa-Hsuan Lin, Jonathan R. Polimeni, Jo-Fu Lotus Lin, Kevin Wen-Kai Tsai, Ying-Hua Chu, Pu-Yeh Wu, Yi-Tien Li, Yi-Cheng Hsu, Shang-Yueh Tsai, Wen-Jui Kuo
2018	J	`jnl`	Stimulus-dependent hemodynamic response timing across the human subcortical-cortical visual pathway identified through high spatiotemporal resolution 7T fMRI. NeuroImage Laura D. Lewis, Kawin Setsompop, Bruce R. Rosen, Jonathan R. Polimeni
2017	J	`jnl`	Functional density and edge maps: Characterizing functional architecture in individuals and improving cross-subject registration. NeuroImage Tong Tong, Iman Aganj, Tian Ge, Jonathan R. Polimeni, Bruce Fischl
2017	J	`jnl`	HIgh b-value and high Resolution Integrated Diffusion (HIBRID) imaging. NeuroImage Qiuyun Fan, Aapo Nummenmaa, Jonathan R. Polimeni, Thomas Witzel, Susie Yi Huang, Van J. Wedeen, Bruce R. Rosen, Lawrence L. Wald
2017	J	`jnl`	Impacting the effect of fMRI noise through hardware and acquisition choices - Implications for controlling false positive rates. NeuroImage Lawrence L. Wald, Jonathan R. Polimeni
2017	J	`jnl`	Reduction of across-run variability of temporal SNR in accelerated EPI time-series data through FLEET-based robust autocalibration. NeuroImage Anna Blazejewska, Himanshu Bhat, Lawrence L. Wald, Jonathan R. Polimeni
2016	J	`jnl`	Automatic cortical surface reconstruction of high-resolution T NeuroImage Ville Renvall, Thomas Witzel, Lawrence L. Wald, Jonathan R. Polimeni
2016	J	`jnl`	Intracortical depth analyses of frequency-sensitive regions of human auditory cortex using 7T fMRI. NeuroImage Jyrki Ahveninen, Wei-Tang Chang, Samantha Huang, Boris Keil, Norbert Kopco, Stephanie Rossi, Giorgio Bonmassar, Thomas Witzel, Jonathan R. Polimeni
2016	J	`jnl`	MGH-USC Human Connectome Project datasets with ultra-high b-value diffusion MRI. NeuroImage Qiuyun Fan, Thomas Witzel, Aapo Nummenmaa, Koene R. A. Van Dijk, John D. Van Horn, Michelle K. Drews, Leah H. Somerville, Margaret A. Sheridan, Rosario M. Santillana, Jenna Snyder, Trey Hedden, Emily E. Shaw, Marisa O. Hollinshead, Ville Renvall, Roberta Zanzonico, Boris Keil, Stephen F. Cauley, Jonathan R. Polimeni, M. Dylan Tisdall, Randy L. Buckner, Van J. Wedeen, Lawrence L. Wald, Arthur W. Toga, Bruce R. Rosen
2016	J	`jnl`	Rapid multi-orientation quantitative susceptibility mapping. NeuroImage Berkin Bilgic, Luke Xie, Russell Dibb, Christian Langkammer, Aysegul Mutluay, Huihui Ye, Jonathan R. Polimeni, Jean Augustinack, Chunlei Liu, Lawrence L. Wald, Kawin Setsompop
2015	—	`conf`	A dual-polarity grappa kernel for the robust reconstruction of accelerated EPI data. ISBI William Scott Hoge, Jonathan R. Polimeni
2015	J	`jnl`	Associations of Resting-State fMRI Functional Connectivity with Flow-BOLD Coupling and Regional Vasculature. Brain Connect. Sungho Tak, Jonathan R. Polimeni, Danny J. J. Wang, Lirong Yan, J. Jean Chen
2015	J	`jnl`	Toward an Brain Connect. Marta Bianciardi, Nicola Toschi, Brian L. Edlow, Cornelius Eichner, Kawin Setsompop, Jonathan R. Polimeni, Emery N. Brown, Hannah C. Kinney, Bruce R. Rosen, Lawrence L. Wald
2014	J	`jnl`	A study-specific fMRI normalization approach that operates directly on high resolution functional EPI data at 7 Tesla. NeuroImage Günther Grabner, Benedikt A. Poser, Kyoko Fujimoto, Jonathan R. Polimeni, Lawrence L. Wald, Siegfried Trattnig, Ivan Toni, Markus Barth
2014	J	`jnl`	Corrigendum to "fMRI hemodynamics accurately reflects neuronal timing in the human brain measured by MEG" [Neuroimage 78 (2013) 372-384]. NeuroImage Fa-Hsuan Lin, Thomas Witzel, Tommi Raij, Jyrki Ahveninen, Kevin Wen-Kai Tsai, Ying-Hua Chu, Wei-Tang Chang, Aapo Nummenmaa, Jonathan R. Polimeni, Wen-Jui Kuo, Jen-Chuen Hsieh, Bruce R. Rosen, John W. Belliveau
2014	J	`jnl`	Dynamic and static contributions of the cerebrovasculature to the resting-state BOLD signal. NeuroImage Sungho Tak, Danny J. J. Wang, Jonathan R. Polimeni, Lirong Yan, J. Jean Chen
2014	J	`jnl`	Dynamic functional imaging of brain glucose utilization using fPET-FDG. NeuroImage Marjorie Villien, Hsiao-Ying Wey, Joseph B. Mandeville, Ciprian Catana, Jonathan R. Polimeni, Christin Y. M. Sander, Nicole R. Zürcher, Daniel B. Chonde, Joanna S. Fowler, Bruce R. Rosen, Jacob M. Hooker
2014	J	`jnl`	Investigating the Capability to Resolve Complex White Matter Structures with High Brain Connect. Qiuyun Fan, Aapo Nummenmaa, Thomas Witzel, Roberta Zanzonico, Boris Keil, Stephen F. Cauley, Jonathan R. Polimeni, M. Dylan Tisdall, Koene R. A. Van Dijk, Randy L. Buckner, Van J. Wedeen, Bruce R. Rosen, Lawrence L. Wald
2014	J	`jnl`	Quantitative comparison of cortical surface reconstructions from MP2RAGE and multi-echo MPRAGE data at 3 and 7 T. NeuroImage Kyoko Fujimoto, Jonathan R. Polimeni, André J. W. van der Kouwe, Martin Reuter, Tobias Kober, Thomas Benner, Bruce Fischl, Lawrence L. Wald
2013	J	`jnl`	Corrigendum to "Surface based analysis of diffusion orientation for identifying architectonic domains in the in vivo human cortex" [NeuroImage 69 (2013) 87-100]. NeuroImage Jennifer A. McNab, Jonathan R. Polimeni, Ruopeng Wang, Jean Augustinack, Kyoko Fujimoto, Allison Stevens, Christina Triantafyllou, Thomas Janssens, Reza Farivar, Rebecca D. Folkerth, Wim Vanduffel, Lawrence L. Wald
2013	J	`jnl`	FOCUSR: Feature Oriented Correspondence Using Spectral Regularization-A Method for Precise Surface Matching. IEEE Trans. Pattern Anal. Mach. Intell. Herve Lombaert, Leo J. Grady, Jonathan R. Polimeni, Farida Cheriet
2013	J	`jnl`	Sparsity-Promoting Calibration for GRAPPA Accelerated Parallel MRI Reconstruction. IEEE Trans. Medical Imaging Daniel S. Weller, Jonathan R. Polimeni, Leo J. Grady, Lawrence L. Wald, Elfar Adalsteinsson, Vivek K. Goyal
2013	J	`jnl`	Surface based analysis of diffusion orientation for identifying architectonic domains in the in vivo human cortex. NeuroImage Jennifer A. McNab, Jonathan R. Polimeni, Ruopeng Wang, Jean Augustinack, Kyoko Fujimoto, Allison Stevens, Thomas Janssens, Reza Farivar, Rebecca D. Folkerth, Wim Vanduffel, Lawrence L. Wald
2013	J	`jnl`	The minimal preprocessing pipelines for the Human Connectome Project. NeuroImage Matthew F. Glasser, Stamatios N. Sotiropoulos, J. Anthony Wilson, Timothy S. Coalson, Bruce Fischl, Jesper L. R. Andersson, Junqian Xu, Saâd Jbabdi, Matthew A. Webster, Jonathan R. Polimeni, David C. Van Essen, Mark Jenkinson
2013	J	`jnl`	Whole-head rapid fMRI acquisition using echo-shifted magnetic resonance inverse imaging. NeuroImage Wei-Tang Chang, Aapo Nummenmaa, Thomas Witzel, Jyrki Ahveninen, Samantha Huang, Kevin Wen-Kai Tsai, Ying-Hua Chu, Jonathan R. Polimeni, John W. Belliveau, Fa-Hsuan Lin
2013	J	`jnl`	fMRI hemodynamics accurately reflects neuronal timing in the human brain measured by MEG. NeuroImage Fa-Hsuan Lin, Thomas Witzel, Tommi Raij, Jyrki Ahveninen, Kevin Wen-Kai Tsai, Ying-Hua Chu, Wei-Tang Chang, Aapo Nummenmaa, Jonathan R. Polimeni, Wen-Jui Kuo, Jen-Chuen Hsieh, Bruce R. Rosen, John W. Belliveau
2012	—	`conf`	Accelerated parallel magnetic resonance imaging reconstruction using joint estimation with a sparse signal model. SSP Daniel S. Weller, Jonathan R. Polimeni, Leo J. Grady, Lawrence L. Wald, Elfar Adalsteinsson, Vivek K. Goyal
2012	J	`jnl`	An implanted 8-channel array coil for high-resolution macaque MRI at 3 T. NeuroImage Thomas Janssens, Boris Keil, Reza Farivar, Jennifer A. McNab, Jonathan R. Polimeni, Annelies Gerits, J. T. Arsenault, Lawrence L. Wald, Wim Vanduffel
2012	J	`jnl`	T NeuroImage Julien Cohen-Adad, Jonathan R. Polimeni, Karl G. Helmer, Thomas Benner, Jennifer A. McNab, Lawrence L. Wald, Bruce R. Rosen, Caterina Mainero
2011	—	`conf`	Atlas-based segmentation for globus pallidus internus targeting on low-resolution MRI. EMBC Maria Ida Iacono, Nikos Makris, Luca T. Mainardi, John T. Gale, André J. W. van der Kouwe, Azma Mareyam, Jonathan R. Polimeni, Lawrence L. Wald, Bruce Fischl, Emad N. Eskandar, Giorgio Bonmassar
2011	Misc	`conf`	Combined compressed sensing and parallel mri compared for uniform and random cartesian undersampling of K-space. ICASSP Daniel S. Weller, Jonathan R. Polimeni, Leo J. Grady, Lawrence L. Wald, Elfar Adalsteinsson, Vivek K. Goyal
2011	—	`conf`	Evaluating sparsity penalty functions for combined compressed sensing and parallel MRI. ISBI Daniel S. Weller, Jonathan R. Polimeni, Leo J. Grady, Lawrence L. Wald, Elfar Adalsteinsson, Vivek K. Goyal
2011	—	`conf`	Fast Brain Matching with Spectral Correspondence. IPMI Herve Lombaert, Leo J. Grady, Jonathan R. Polimeni, Farida Cheriet
2011	J	`jnl`	Physiological noise and signal-to-noise ratio in fMRI with multi-channel array coils. NeuroImage Christina Triantafyllou, Jonathan R. Polimeni, Lawrence L. Wald
2010	—	`book`	Discrete Calculus - Applied Analysis on Graphs for Computational Science. Leo J. Grady, Jonathan R. Polimeni
2010	J	`jnl`	Laminar analysis of 7 T BOLD using an imposed spatial activation pattern in human V1. NeuroImage Jonathan R. Polimeni, Bruce Fischl, Douglas N. Greve, Lawrence L. Wald
2010	J	`jnl`	Near-isometric flattening of brain surfaces. NeuroImage Mukund Balasubramanian, Jonathan R. Polimeni, Eric L. Schwartz
2009	J	`jnl`	Exact Geodesics and Shortest Paths on Polyhedral Surfaces. IEEE Trans. Pattern Anal. Mach. Intell. Mukund Balasubramanian, Jonathan R. Polimeni, Eric L. Schwartz
2009	J	`jnl`	Locating the functional and anatomical boundaries of human primary visual cortex. NeuroImage Oliver Hinds, Jonathan R. Polimeni, Niranjini Rajendran, Mukund Balasubramanian, Katrin Amunts, Karl Zilles, Eric L. Schwartz, Bruce Fischl, Christina Triantafyllou
2009	J	`jnl`	Predicting the location of entorhinal cortex from MRI. NeuroImage Bruce Fischl, Allison Stevens, Niranjini Rajendran, B. T. Thomas Yeo, Douglas N. Greve, Koen Van Leemput, Jonathan R. Polimeni, Sita Kakunoori, Randy L. Buckner, Jennifer L. Pacheco, David H. Salat, Jennifer Melcher, Matthew P. Frosch, Bradley T. Hyman, Patricia Ellen Grant, Bruce R. Rosen, André J. W. van der Kouwe, Graham C. Wiggins, Lawrence L. Wald, Jean Augustinack
2008	J	`jnl`	Accurate prediction of V1 location from cortical folds in a surface coordinate system. NeuroImage Oliver Hinds, Niranjini Rajendran, Jonathan R. Polimeni, Jean C. Augustinack, Graham C. Wiggins, Lawrence L. Wald, H. Diana Rosas, Andreas Potthast, Eric L. Schwartz, Bruce Fischl
2008	J	`jnl`	Event-related single-shot volumetric functional magnetic resonance inverse imaging of visual processing. NeuroImage Fa-Hsuan Lin, Thomas Witzel, Joseph B. Mandeville, Jonathan R. Polimeni, Thomas A. Zeffiro, Douglas N. Greve, Graham C. Wiggins, Lawrence L. Wald, John W. Belliveau
2002	J	`jnl`	The V1-V2-V3 complex: quasiconformal dipole maps in primate striate and extra-striate cortex. Neural Networks Mukund Balasubramanian, Jonathan R. Polimeni, Eric L. Schwartz