Jonathan R. Nebeker

52 papers B 3Misc 25Journal 12Unranked 12

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	Anomaly Detection in Electronic Health Records Across Hospital Networks: Integrating Machine Learning With Graph Algorithms. IEEE J. Biomed. Health Informatics Haoran Niu, Olufemi A. Omitaomu, Michael A. Langston, Stephen K. Grady, Mohammed M. Olama, Özgür Özmen, Hilda B. Klasky, Angela Laurio, Merry Ward, Jonathan R. Nebeker
2024	J	`jnl`	A framework for inferring and analyzing pharmacotherapy treatment patterns. BMC Medical Informatics Decis. Mak. Everett Neil Rush, Özgür Özmen, Minsu Kim, Erin Rush Ortegon, Makoto Jones, Byung H. Park, Steven Pizer, Jodie Trafton, Lisa A. Brenner, Merry Ward, Jonathan R. Nebeker
2024	J	`jnl`	EHR-BERT: A BERT-based model for effective anomaly detection in electronic health records. J. Biomed. Informatics Haoran Niu, Olufemi A. Omitaomu, Michael A. Langston, Mohammed M. Olama, Özgür Özmen, Hilda B. Klasky, Angela Laurio, Merry Ward, Jonathan R. Nebeker
2023	Misc	`conf`	CPViz: Visualizing clinical pathways represented in higher-order networks. Visualization and Data Analysis Junghoon Chae, Byung H. Park, Minsu Kim, Everett Neil Rush, Özgür Özmen, Makoto Jones, Merry Ward, Jonathan R. Nebeker
2023	—	`conf`	Towards a Comparative Assessment of Data-Driven Process Models in Health Information Technology. ICHI Hilda B. Klasky, Özgür Özmen, Olufemi A. Omitaomu, Mohammed M. Olama, Merry Ward, Angela Laurio, Jonathan R. Nebeker
2022	—	`conf`	A Systematic Review of Healthcare Information Technology Anomaly Classification. ICHI Laura Pullum, Olufemi A. Omitaomu, Mohammed M. Olama, Addi Thakur Malviya, Ozgur Ozmer, Hilda B. Klasky, P. Teja Kuruganti, Merry Ward, Jeanie M. Scott, Angela Laurio, Brian C. Sauer, Frank Drews, Jonathan R. Nebeker
2022	—	`conf`	CDS-Compare: A Web Application for Machine Learning Assisted Curation of Clinical Order Sets. MIE Zackary Falls, Steven H. Brown, Naveed Shah, Frank LeHouillier, Randeep Badwal, Kendria Hall, Gillian Franklin, William H. Kelly, Andrew Holdaway, Diane Montella, Linda Wedemeyer, Sarita Keni, Eric Rose, Jonathan R. Nebeker, Peter L. Elkin
2022	Misc	`conf`	Collaborative High Reliability Organization (HRO) Initiative in the Veterans Health Information Exchange (VHIE) Program. AMIA Sandra Mitchell, Gay Stahr, Todd Turner, Jeffery Anderson, Jonathan R. Nebeker
2022	Misc	`conf`	Defining Long-Covid Profiles for Future Diagnoses Through Extensive Analysis of VA Covid-19 Data. AMIA Skyler Resendez, Hugo Sebastian Ruiz Ayala, Wilmon McCray, Steven H. Brown, Jonathan R. Nebeker, Diane Montella, Peter L. Elkin
2022	J	`jnl`	Detecting anomalous sequences in electronic health records using higher-order tensor networks. J. Biomed. Informatics Haoran Niu, Olufemi A. Omitaomu, Michael A. Langston, Mohammed M. Olama, Özgür Özmen, Hilda B. Klasky, Angela Laurio, Brian C. Sauer, Merry Ward, Jonathan R. Nebeker
2022	B	`conf`	Real-time Multi-granular Analytics Framework for HIT Systems. IEEE Big Data Byung H. Park, Sangkeun Lee, Özgür Özmen, Mohit Kumar, Merry Ward, Jonathan R. Nebeker
2022	—	`conf`	The Gaps in the Terminological Representation of the ACORN Social Determinants of Health Survey. ICBO Melissa P. Resnick, Diane Montella, Wilmon McCray, Steven H. Brown, Keith E. Campbell, Jonathan R. Nebeker, Frank LeHouillier, Peter L. Elkin
2022	—	`conf`	Use of Event-Time Embeddings via RNN to Discern Novel Event Sequences in EHRs. ICHI Özgür Özmen, Hilda B. Klasky, Olufemi A. Omitaomu, Mohammed M. Olama, P. Teja Kuruganti, Laura Pullum, Addi Thakur Malviya, Merry Ward, Jeanie M. Scott, Angela Laurio, Brian C. Sauer, Frank Drews, Jonathan R. Nebeker
2021	—	`conf`	A Knowledge Network-Based Approach to Facilitate Annotation of Clinical Pathway Component Clusters. BHI S. M. Shamimul Hasan, Minsu Kim, Byung H. Park, Makoto M. Jones, Merry Ward, Jonathan R. Nebeker
2021	J	`jnl`	A new methodological framework for hazard detection models in health information technology systems. J. Biomed. Informatics Olufemi A. Omitaomu, Hilda B. Klasky, Mohammed M. Olama, Özgür Özmen, Laura Pullum, Addi Thakur Malviya, P. Teja Kuruganti, Jeanie M. Scott, Angela Laurio, Frank Drews, Brian C. Sauer, Merry Ward, Jonathan R. Nebeker
2021	J	`jnl`	Analysis of the cognitive demands of electronic health record use. J. Biomed. Informatics Mark S. Pfaff, Ozgur Eris, Charlene R. Weir, Amanda Anganes, Tina Crotty, Mohammad Rahman, Merry Ward, Jonathan R. Nebeker
2020	—	`conf`	Adaptive Anomaly Detection for Dynamic Clinical Event Sequences. IEEE BigData Haoran Niu, Olufemi A. Omitaomu, Qing Charles Cao, Mohammed M. Olama, Özgür Özmen, Hilda B. Klasky, Laura Pullum, Addi Thakur Malviya, P. Teja Kuruganti, Jeanie M. Scott, Angela Laurio, Frank Drews, Brian C. Sauer, Merry Ward, Jonathan R. Nebeker
2020	B	`conf`	Characterizing Sub-Cohorts via Data Normalization and Representation Learning. CBMS Everett Neil Rush, Özgür Özmen, Kathryn Knight, Byung H. Park, Clifton Baker, Makoto Jones, Merry Ward, Jonathan R. Nebeker
2020	B	`conf`	Converting Clinical Pathways to BPM+ Standards: A Case Study in Stable Ischemic Heart Disease. CBMS Junghoon Chae, Byung H. Park, Makoto Jones, Merry Ward, Jonathan R. Nebeker
2019	—	`conf`	A Tale of Two Databases: The DoD and VA Infrastructure for Clinical Intelligence (DaVINCI). MedInfo Scott L. DuVall, Michael E. Matheny, Ildar R. Ibragimov, Trey D. Oats, Jay N. Tucker, Brett R. South, Augie Turano, Hamid Saoudian, Casey Kangas, Keith D. Hofmann, Wendy Funk, Chris Nichols, Albert Bonnema, Louis Ferrucci, Jonathan R. Nebeker
2019	Misc	`conf`	One-Way and Round-Trip Analysis Demonstrates Surprising Limitations of Standards-Based Terminology Maps. AMIA Steven H. Brown, Loren Stevenson, Daniel Territo, Jonathan R. Nebeker, Michael J. Lincoln, John Kilbourne, Holly Miller
2019	—	`conf`	Topic Modeling to Discern Irregular Order Patterns in Unlabeled Electronic Health Records. BHI Özgür Özmen, Hilda B. Klasky, Olufemi A. Omitaomu, Mohammed M. Olama, P. Teja Kuruganti, Laura Pullum, Merry Ward, Jeanie M. Scott, Angela Laurio, Jonathan R. Nebeker
2018	Misc	`conf`	Interoperability Progress and Remaining Data Quality Barriers of Certified Health Information Technologies. AMIA John D. D'Amore, Omar Bouhaddou, Sandra Mitchell, Chun Li, Russell Leftwich, Todd Turner, Matthew Rahn, Margaret Donahue, Jonathan R. Nebeker
2018	Misc	`conf`	On-Demand Health Information Exchange Strategy: Estimating the Amount of Duplicate Documents Sent and Received. AMIA Omar Bouhaddou, Nelson Hsing, Nitin Jain, Jim Malpass, Margaret Donahue, Jonathan R. Nebeker
2018	Misc	`conf`	The Department of Defense (DoD) and Department of Veterans Affairs (VA) Infrastructure for Clinical Intelligence (DaVINCI). AMIA Scott L. DuVall, Michael E. Matheny, Ildar R. Ibragimov, Trey D. Oats, Jay N. Tucker, Brett R. South, Augie Turano, Hamid Saoudian, Casey Kangas, Keith D. Hofmann, Wendy Funk, Chris Nichols, Albert Bonnema, Louis Ferrucci, Jonathan R. Nebeker
2018	Misc	`conf`	Veterans Health Information Exchange: Successes and Challenges of Nationwide Interoperability. AMIA Margaret Donahue, Omar Bouhaddou, Nelson Hsing, Todd Turner, Glen Crandall, Joseph R. Nelson, Jonathan R. Nebeker
2017	J	`jnl`	Effect of health information exchange on recognition of medication discrepancies is interrupted when data charges are introduced: results of a cluster-randomized controlled trial. J. Am. Medical Informatics Assoc. Kenneth S. Boockvar, William Ho, Jennifer Pruskowski, Katherine E. DiPalo, Jane J. Wong, Jessica Patel, Jonathan R. Nebeker, Rainu Kaushal, William Hung
2016	Misc	`conf`	Automated Detection of Privacy Sensitive Conditions in C-CDAs: Security Labeling Services at the Department of Veterans Affairs. AMIA Omar Bouhaddou, Mike Davis, Margaret Donahue, Anthony Mallia, Stephania Griffin, Jennifer Teal, Jonathan R. Nebeker
2016	Misc	`conf`	VA's New Electronic Health Management Platform (eHMP): Novel Features for Activity Management and Notifications. AMIA Jonathan R. Nebeker, Shane McNamee, David Douglas, James L. Hellewell, Kristian Johnson, Jessica Murphy, Ron Moody, Charlene R. Weir
2015	Misc	`conf`	Electronic Health Management Platform (eHMP): The Next Phase of VA's EHR. AMIA Jonathan R. Nebeker, Walter P. Nichol, Shane McNamee, Jessica Murphy, James L. Hellewell, Reese Omizo, Kristian Johnson, Margaret V. McDonald, Kensaku Kawamoto, Guilherme Del Fiol, Emory Fry, Elaine Hunolt, Theresa Cullen, Scott D. Wood, Jennifer Herout, Charlene R. Weir
2015	J	`jnl`	Maximizing clinical cohort size using free text queries. Comput. Biol. Medicine Adi V. Gundlapalli, Doug Redd, Bryan Smith Gibson, Marjorie Carter, Chris Korhonen, Jonathan R. Nebeker, Matthew H. Samore, Qing Zeng-Treitler
2015	Misc	`conf`	Transforming the National Department of Veterans Affairs Data Warehouse to the OMOP Common Data Model. AMIA Fern FitzHenry, Jesse Brannen, Jason N. Denton, Jonathan R. Nebeker, Scott L. DuVall, Freneka F. Minter, Jeffrey Scehnet, Brian C. Sauer, Lucila Ohno-Machado, Michael E. Matheny
2015	Misc	`conf`	Uncovering the Cognitive Demands of EHR Use via Task Analysis. AMIA Mark S. Pfaff, Ozgur Eris, Amanda Anganes, Tina Crotty, Jonathan R. Nebeker, Merry Ward
2014	J	`jnl`	Brief communication: pSCANNER: patient-centered Scalable National Network for Effectiveness Research. J. Am. Medical Informatics Assoc. Lucila Ohno-Machado, Zia Agha, Douglas S. Bell, Lisa Dahm, Michele E. Day, Jason N. Doctor, Davera Gabriel, Maninder K. Kahlon, Katherine K. Kim, Michael A. Hogarth, Michael E. Matheny, Daniella Meeker, Jonathan R. Nebeker
2014	Misc	`conf`	Considerations of Dual Process Theories for EHR Design. AMIA Charlene R. Weir, Bryan Smith Gibson, Alan H. Morris, Jorie Butler, Matthew H. Samore, Jonathan R. Nebeker
2014	Misc	`conf`	Sophia: An Expedient UMLS Concept Extraction Annotator. AMIA Guy Divita, Qing T. Zeng, Adi V. Gundlapalli, Scott L. DuVall, Jonathan R. Nebeker, Matthew H. Samore
2013	Misc	`conf`	Effects of Electronic Health Records Systems on the Exam-Room Communication Skills of Resident Physicians. AMIA Leslie Lenert, Farrant Sakaguchi, Robert Dunlea, Kurt Barsch, Jonathan R. Nebeker, Caroline Milne
2013	—	`conf`	Improve Retrieval Performance on Clinical Notes: A Comparison of Four Methods. HICSS Doug Redd, Thomas C. Rindflesch, Jonathan R. Nebeker, Qing Zeng-Treitler
2013	Misc	`conf`	Integrating Information Objects and Annotations in the Notional DoD-VA iEHR User Experience: Results from a randomized controlled trial on efficiency and accuracy of problem assessment and intervention specification. AMIA Jonathan R. Nebeker, Charlene R. Weir, James L. Hellewell, Molly Leecaster, Frank Drews, Robyn Barrus, Daniel Bolton, Gopi Penmetsa, Amelia E. Underwood
2013	Misc	`conf`	Support For Contextual Control In Primary Care: A Qualitative Analysis. AMIA Charlene R. Weir, Frank Drews, Jorie Butler, Makoto L. Jones, Robyn Barrus, Jonathan R. Nebeker
2012	Misc	`conf`	CASPR: Friendly Annotation Management. AMIA Tyler Forbush, Brad Adams, Shuying Shen, Brett R. South, Jonathan R. Nebeker, Scott L. DuVall
2012	Misc	`conf`	Synonym, Topic Model and Predicate-Based Query Expansion for Retrieving Clinical Documents. AMIA Qing T. Zeng, Doug Redd, Thomas C. Rindflesch, Jonathan R. Nebeker
2012	Misc	`conf`	The Orderly and Effective Visit: Impact of the Electronic Health Record on Modes of Cognitive Control. AMIA Charlene R. Weir, Frank Drews, Molly Leecaster, Robyn Barrus, Jonathan R. Nebeker
2011	—	`conf`	Cognitive Analysis of a Medication Reconciliation Tool: Applying Laboratory and Naturalistic Approaches to System Evaluation. ITCH Andre Kushniruk, Susan L. Santos, George Pourakis, Jonathan R. Nebeker, Kenneth S. Boockvar
2011	—	`conf`	Creating Reusable Annotated Corpora with the Clinical Document Architecture. HICSS Scott L. DuVall, Keith W. Boone, Adi V. Gundlapalli, Brett R. South, Shuying Shen, Jonathan R. Nebeker, Leonard W. D'Avolio, Matthew H. Samore
2011	J	`jnl`	The perception of medical professionals and medical students on the usefulness of an emergency medical card and a continuity of care report in enhancing continuity of care. Int. J. Medical Informatics Christopher H. O. Olola, Scott P. Narus, Jonathan R. Nebeker, Mollie R. Poynton, Joseph Hales, Belle Rowan, Heather LeSieur, Cynthia Zumbrennen, Annemarie A. Edwards, Robert Crawford, Spencer Amundsen, Yasmin Kabir, Joseph Atkin, Cynthia Newberry, Jason Young, Tariq Hanifi, Ben Risenmay, Tyler Sorensen, R. Scott Evans
2008	Misc	`conf`	Informatics Tools for the Development of Action-Oriented Triggers for Outpatient Adverse Drug Events. AMIA Hillary J. Mull, Jonathan R. Nebeker
2007	Misc	`conf`	Critical Issues in an Electronic Documentation System. AMIA Charlene R. Weir, Jonathan R. Nebeker
2007	J	`jnl`	Research Paper: A Cognitive Task Analysis of Information Management Strategies in a Computerized Provider Order Entry Environment. J. Am. Medical Informatics Assoc. Charlene R. Weir, Jonathan R. Nebeker, Bret L. Hicken, Rebecca Campo, Frank Drews, Beth LeBar
2003	Misc	`conf`	Critical Gaps in the World's Largest Electronic Medical Record: Ad Hoc Nursing Narratives and Invisible Adverse Drug Events. AMIA John F. Hurdle, Charlene R. Weir, Beverly Roth, Jennifer M. Hoffman, Jonathan R. Nebeker
2002	J	`jnl`	Developing a Taxonomy for Research in Adverse Drug Events: Potholes and Signposts. J. Am. Medical Informatics Assoc. Jonathan R. Nebeker, John F. Hurdle, Jennifer M. Hoffman, Beverly Roth, Charlene R. Weir, Matthew H. Samore
2001	Misc	`conf`	Developing a taxonomy for research in adverse drug events: potholes and signposts. AMIA Jonathan R. Nebeker, John F. Hurdle, Jennifer M. Hoffman, Beverly Roth, Charlene R. Weir, Matthew H. Samore