Jonathan P. Bona

42 papers C 1Misc 10Journal 5Unranked 26

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	Generation of Interactive Knowledge Graphs to Enable Research of the Effects of Trauma Center Organization on Patient Outcomes. KGSWC Emma Chappell, Justin M. Whorton, Adrià A. Villafranca, Reza Shahriari, Scott C. Brakenridge, Judy L. Bennett, Songthip T. Ounpraseuth, Eric D. Ragan, William R. Hogan, Jonathan P. Bona, Kevin W. Sexton, Mathias Brochhausen
2024	—	`conf`	Expanding the Ontology of Organizational Structures of Trauma Centers and Trauma Systems. ICBO Diya Mehta, Justin M. Whorton, Reza Shahriari, Eric D. Ragan, Jonathan P. Bona, William R. Hogan, Kevin W. Sexton, Mathias Brochhausen
2022	—	`conf`	Building a Radiation Therapy Ontology. ICBO Mark Phillips, Andre Dekker, Charles Mayo, Peter Gabriel, Jonathan P. Bona
2022	—	`conf`	Enhancing Childhood Nutrition Data with Open Biomedical Ontologies. ICBO Jonathan P. Bona, Alexander D. Diehl, Alexander P. Cox, Aaron S. Kemp, Linda J. Larson-Prior
2022	Misc	`conf`	Reddit Caregiver Support Forums: NLP and Visualization for Digestion of Complex Themes. AMIA Catherine C. Shoults, Michael W. Rutherford, Aaron S. Kemp, Merideth Addicott, Aliza Brown, Carolyn Greene, Corey J. Hayes, Jennifer Gan, Linda J. Larson-Prior, Jonathan P. Bona
2021	—	`conf`	Recent Refinements of the NeuroPsychological Testing Ontology. ICBO Alexander P. Cox, Kiernan L. Johnson, Lauren Wishnie, Aaron S. Kemp, Jonathan P. Bona, Alexander D. Diehl
2021	J	`jnl`	Semantic Integration of Multi-Modal Data and Derived Neuroimaging Results Using the Platform for Imaging in Precision Medicine (PRISM) in the Arkansas Imaging Enterprise System (ARIES). Frontiers Artif. Intell. Jonathan P. Bona, Aaron S. Kemp, Carli Cox, Tracy S. Nolan, Lakshmi R. Pillai, Aparna Das, James E. Galvin, Linda J. Larson-Prior, Tuhin Virmani, Fred W. Prior
2020	—	`conf`	A Python Utility for Working with OBO Foundry Terms (short paper). ICBO/ODLS Jonathan P. Bona
2019	—	`conf`	Building a Shared Ontology Use Patterns Repository. ICBO Jonathan P. Bona, Joseph Utecht, Sarah Bost, Corey J. Hayes, Mathias Brochhausen
2019	J	`jnl`	Enhancing the drug ontology with semantically-rich representations of National Drug Codes and RxNorm unique concept identifiers. BMC Bioinform. Jonathan P. Bona, Mathias Brochhausen, William R. Hogan
2019	Misc	`conf`	Providing a User-oriented Interface to Enable Semantic Queries in PRISM. AMIA Jonathan P. Bona, Joseph Utecht, Mathias Brochhausen
2019	—	`conf`	Semantic Integration of Neuroinformatics Data in the Arkansas Image Enterprise System with Open Biomedical Ontologies. ICBO Jonathan P. Bona, Aaron S. Kemp, Tracy S. Nolan, Linda J. Larson-Prior, Aparna Das, Tuhin Virmani, Lakshmi R. Pillai, Mathias Brochhausen, Fred W. Prior
2019	Misc	`conf`	Semantic Representations of Multi-Modal Data, NeuroInformatic Processing Pipelines, and Derived Neuroimaging Results in the Arkansas Image Enterprise System (ARIES). AMIA Aaron S. Kemp, Jonathan P. Bona, Tracy S. Nolan, Linda J. Larson-Prior, Tuhin Virmani, Lakshmi R. Pillai, Mathias Brochhausen, Lawrence Tarbox, Fred W. Prior
2019	Misc	`conf`	Using Semantic Representations for Urine Drug Tests in the Veterans Health Administration. AMIA Corey J. Hayes, Jonathan P. Bona, Mathias Brochhausen
2018	J	`jnl`	Mismatches between major subhierarchies and semantic tags in SNOMED CT. J. Biomed. Informatics Jonathan P. Bona, Werner Ceusters
2018	Misc	`conf`	Ontologies Enabling Non-image Data Queries in The Cancer Imaging Archive. AMIA Jonathan P. Bona, Tracy S. Nolan, Dillon Gibson, Mathias Brochhausen
2018	—	`conf`	Ontology-Enhanced Representations of Non-Image Data in The Cancer Image Archive. ICBO Jonathan P. Bona, Tracy S. Nolan, Mathias Brochhausen
2018	—	`conf`	The Role of Axiomatically-Rich Ontologies in Transforming Medical Data to Knowledge. pHealth Mathias Brochhausen, Jonathan P. Bona, Bernd Blobel
2018	—	`conf`	Towards the Development of an Opioid Misuse Ontology. ICBO Corey J. Hayes, Jonathan P. Bona, Mathias Brochhausen
2017	Misc	`conf`	Creating RDF Data on Trauma Care Organizations from Questionnaires. AMIA Joseph R. Utecht, Jonathan P. Bona, Mathias Brochhausen
2017	Misc	`conf`	Does Semantic Tag Usage in SNOMED CT Match its Concept Hierarchy? AMIA Jonathan P. Bona
2017	J	`jnl`	Protein Ontology (PRO): enhancing and scaling up the representation of protein entities. Nucleic Acids Res. Darren A. Natale, Cecilia N. Arighi, Judith A. Blake, Jonathan P. Bona, Chuming Chen, Sheng-Chih Chen, Karen R. Christie, Julie Cowart, Peter D'Eustachio, Alexander D. Diehl, Harold J. Drabkin, William D. Duncan, Hongzhan Huang, Jia Ren, Karen Ross, Alan Ruttenberg, Veronica Shamovsky, Barry Smith, Qinghua Wang, Jian Zhang, Abdelrahman Elsayed, Cathy H. Wu
2017	—	`conf`	Scrutinizing the Relationships Between SNOMED CT Concepts and Semantic Tags. ICBO Jonathan P. Bona, Werner Ceusters
2017	—	`conf`	Toward Using Ontologies to Improve Results in Searches for Mental Health Information. ICBO Jonathan P. Bona, John Grohol, Meredith N. Zozus, Robert Zozus, Mathias Brochhausen
2016	—	`conf`	Analysis of SNOMED "Bleeding" Concepts & Terms. ICBO/BioCreative Jonathan P. Bona, Selja Seppälä, Werner Ceusters
2016	Misc	`conf`	Analyzing SNOMED CT's Historical Data: Pitfalls and Possibilities. AMIA Werner Ceusters, Jonathan P. Bona
2016	Misc	`conf`	Identifying Missing Finding Site Relations in SNOMED CT. AMIA Jonathan P. Bona, Werner Ceusters
2016	C	`conf`	Ontologies of Dynamical Systems and Verifiable Ontology-Based Computation: Towards a Haskell-Based Implementation of Referent Tracking. FOIS Thomas Bittner, Jonathan P. Bona, Werner Ceusters
2016	—	`conf`	Representing SNOMED CT Concept Evolutions using Process Profiles. JOWO@FOIS Werner Ceusters, Jonathan P. Bona
2016	—	`conf`	The ImmPort Antibody Ontology. ICBO/BioCreative William D. Duncan, Travis Allen, Jonathan P. Bona, Olivia Helfer, Barry Smith, Alan Ruttenberg, Alexander D. Diehl
2015	Misc	`conf`	An Ontology-Driven Patient History Questionnaire System. AMIA Jonathan P. Bona
2015	—	`conf`	Comparing Small Graph Retrieval Performance for Ontology Concepts in Medical Texts. Big-O(Q)/DMAH@VLDB Daniel R. Schlegel, Jonathan P. Bona, Peter L. Elkin
2015	—	`conf`	Ontology-driven patient history questionnaires. ICBO Jonathan P. Bona, Gunther Kohn, Alan Ruttenberg
2015	—	`conf`	Replacing EHR structured data with explicit representations. ICBO Jonathan P. Bona, Werner Ceusters
2014	—	`conf`	An Ontology-Based Symbol Grounding System for Human-Robot Interaction. AAAI Fall Symposia Patrick Beeson, David Kortenkamp, R. Peter Bonasso, Andreas Persson, Amy Loutfi, Jonathan P. Bona
2014	—	`conf`	Applications of OBI 'assay'. ICBO Mark Jensen, Alexander P. Cox, Jonathan P. Bona, William D. Duncan, Patrick L. Ray, Alexander D. Diehl
2014	—	`conf`	Representing Modification Sites in PRO. ICBO Jonathan P. Bona, Alan Ruttenberg, Jenny Rouleau
2013	—	`conf`	Ontology Based Annotation of Contextualized Vital Signs. ICBO Albert Goldfain, Min Xu, Jonathan P. Bona, Barry Smith
2012	—	`conf`	Modality in the MGLAIR Architecture. BICA Jonathan P. Bona, Stuart C. Shapiro
2010	—	`conf`	The GLAIR Cognitive Architecture. Cognitive Robotics Stuart C. Shapiro, Jonathan P. Bona
2009	—	`conf`	The GLAIR Cognitive Architecture. AAAI Fall Symposium: Biologically Inspired Cognitive Architectures Stuart C. Shapiro, Jonathan P. Bona
2009	J	`jnl`	The agent takes the stage. Int. J. Arts Technol. Josephine Anstey, A. Patrice Seyed, Sarah Bay-Cheng, Dave Pape, Stuart C. Shapiro, Jonathan P. Bona, Stephen Hibit