Jonathan L. Haines

15 papers B 1Misc 3Journal 10Unranked 1

Year	Rank	Type	Title / Venue / Authors
2021	J	`jnl`	Automated identification of clinical features from sparsely annotated 3-dimensional medical imaging. npj Digit. Medicine Nadav Rakocz, Jeffrey N. Chiang, Muneeswar G. Nittala, Giulia Corradetti, Liran Tiosano, Swetha Velaga, Michael Thompson, Brian L. Hill, Sriram Sankararaman, Jonathan L. Haines, Margaret A. Pericak-Vance, Dwight Stambolian, SriniVas R. Sadda, Eran Halperin
2020	Misc	`conf`	Hadoop and PySpark for Reproducibility and Scalability of Genomic Sequencing Studies. PSB Nicholas R. Wheeler, Penelope Benchek, Brian W. Kunkle, Kara L. Hamilton-Nelson, MikeWarfe, Jeremy R. Fondran, Jonathan L. Haines, William S. Bush
2018	J	`jnl`	Functional annotation of genomic variants in studies of late-onset Alzheimer's disease. Bioinform. Mariusz Butkiewicz, Elizabeth E. Blue, Yuk Yee Leung, Xueqiu Jian, Edoardo Marcora, Alan E. Renton, Amanda Kuzma, Li-San Wang, Daniel C. Koboldt, Jonathan L. Haines, William S. Bush
2017	J	`jnl`	Introducing COCOS: codon consequence scanner for annotating reading frame changes induced by stop-lost and frame shift variants. Bioinform. Mariusz Butkiewicz, Jonathan L. Haines, William S. Bush
2016	J	`jnl`	Disease gene prioritization by integrating tissue-specific molecular networks using a robust multi-network model. BMC Bioinform. Jingchao Ni, Mehmet Koyutürk, Hanghang Tong, Jonathan L. Haines, Rong Xu, Xiang Zhang
2016	—	`conf`	Drug-drug Interaction Profiles of Medication Regimens Extracted from a De-identified Electronic Medical Records System. CRI Mariusz Butkiewicz, Nicole A. Restrepo, Jonathan L. Haines, Dana C. Crawford
2016	J	`jnl`	Pathway analysis by randomization incorporating structure - PARIS: an update. Bioinform. Mariusz Butkiewicz, Jessica Cooke Bailey, Alex T. Frase, Scott M. Dudek, Brian L. Yaspan, Marylyn D. Ritchie, Sarah A. Pendergrass, Jonathan L. Haines
2016	J	`jnl`	PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability. J. Am. Medical Informatics Assoc. Jacqueline Kirby, Peter Speltz, Luke V. Rasmussen, Melissa A. Basford, Omri Gottesman, Peggy L. Peissig, Jennifer A. Pacheco, Gerard Tromp, Jyotishman Pathak, David S. Carrell, Stephen B. Ellis, Todd Lingren, William K. Thompson, Guergana Savova, Jonathan L. Haines, Dan M. Roden, Paul A. Harris, Joshua C. Denny
2015	J	`jnl`	Estimating cumulative pathway effects on risk for age-related macular degeneration using mixed linear models. BMC Bioinform. Jacob B. Hall, Jessica Cooke Bailey, Joshua Hoffman, Margaret A. Pericak-Vance, William K. Scott, Jaclyn Kovach, Stephen G. Schwartz, Anita Agarwal, Milam A Brantley, Jonathan L. Haines, William S. Bush
2015	Misc	`conf`	Mitochondrial Variation and the Risk of Age-Related Macular Degeneration Across Diverse Populations. Pacific Symposium on Biocomputing Nicole A. Restrepo, Sabrina L. Mitchell, Robert J. Goodloe, Deborah G. Murdock, Jonathan L. Haines, Dana C. Crawford
2014	B	`conf`	Genotype Correlation Analysis Reveals Pathway-Based Functional Disequilibrium and Potential Epistasis in the Human Interactome. EvoApplications William S. Bush, Jonathan L. Haines
2014	J	`jnl`	Size matters: How population size influences genotype-phenotype association studies in anonymized data. J. Biomed. Informatics Raymond Heatherly, Joshua C. Denny, Jonathan L. Haines, Dan M. Roden, Bradley A. Malin
2012	Misc	`conf`	PheKB.org: An Online Collaboration Tool for Phenotype Algorithm Research. AMIA Joshua Pruitt, Peter Speltz, Jacqueline Kirby, Melissa A. Basford, Jonathan L. Haines, Joshua C. Denny
2006	J	`jnl`	A comparative analysis of the information content in long and short SAGE libraries. BMC Bioinform. Yi-Ju Li, Puting Xu, Xuejun Qin, Donald E. Schmechel, Christine M. Hulette, Jonathan L. Haines, Margaret A. Pericak-Vance, John R. Gilbert
2006	J	`jnl`	Dissecting trait heterogeneity: a comparison of three clustering methods applied to genotypic data. BMC Bioinform. Tricia A. Thornton-Wells, Jason H. Moore, Jonathan L. Haines