Jonathan Gryak

65 papers A* 1Journal 32Unranked 31

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	LLM-ODE: Data-driven Discovery of Dynamical Systems with Large Language Models. CoRR Amirmohammad Ziaei Bideh, Jonathan Gryak
2026	A*	`conf`	MDBench: Benchmarking Data-Driven Methods for Model Discovery. AAAI Amirmohammad Ziaei Bideh, Aleksandra Georgievska, Jonathan Gryak
2025	J	`jnl`	MDBench: Benchmarking Data-Driven Methods for Model Discovery. CoRR Amirmohammad Ziaei Bideh, Aleksandra Georgievska, Jonathan Gryak
2024	J	`jnl`	Learning using privileged information with logistic regression on acute respiratory distress syndrome detection. Artif. Intell. Medicine Zijun Gao, Shuyang Cheng, Emily Wittrup, Jonathan Gryak, Kayvan Najarian
2023	J	`jnl`	A Novel Tropical Geometry-Based Interpretable Machine Learning Method: Pilot Application to Delivery of Advanced Heart Failure Therapies. IEEE J. Biomed. Health Informatics Heming Yao, Harm Derksen, Jessica R. Golbus, Justin Zhang, Keith D. Aaronson, Jonathan Gryak, Kayvan Najarian
2023	J	`jnl`	Quadratic Multilinear Discriminant Analysis for Tensorial Data Classification. Algorithms Cristian Minoccheri, Olivia Alge, Jonathan Gryak, Kayvan Najarian, Harm Derksen
2023	J	`jnl`	Tensor Denoising via Amplification and Stable Rank Methods. CoRR Jonathan Gryak, Kayvan Najarian, Harm Derksen
2022	J	`jnl`	A deep learning framework for automated detection and quantitative assessment of liver trauma. BMC Medical Imaging Negar Farzaneh, Erica B. Stein, Reza Soroushmehr, Jonathan Gryak, Kayvan Najarian
2022	J	`jnl`	An interpretable neural network for outcome prediction in traumatic brain injury. BMC Medical Informatics Decis. Mak. Cristian Minoccheri, Craig A. Williamson, Mark Hemmila, Kevin Ward, Erica B. Stein, Jonathan Gryak, Kayvan Najarian
2022	J	`jnl`	Prediction of Oral Food Challenges via Machine Learning. CoRR Justin Zhang, Deborah Lee, Kylie Jungles, Diane Shaltis, Kayvan Najarian, Rajan Ravikumar, Georgiana Sanders, Jonathan Gryak
2022	J	`jnl`	Vessel segmentation for X-ray coronary angiography using ensemble methods with deep learning and filter-based features. BMC Medical Imaging Zijun Gao, Lu Wang, Reza Soroushmehr, Alexander Wood, Jonathan Gryak, Brahmajee K. Nallamothu, Kayvan Najarian
2021	J	`jnl`	A Novel Tropical Geometry-based Interpretable Machine Learning Method: Application in Prognosis of Advanced Heart Failure. CoRR Heming Yao, Harm Derksen, Jessica R. Golbus, Justin Zhang, Keith D. Aaronson, Jonathan Gryak, Kayvan Najarian
2021	J	`jnl`	A hierarchical expert-guided machine learning framework for clinical decision support systems: an application to traumatic brain injury prognostication. npj Digit. Medicine Negar Farzaneh, Craig A. Williamson, Jonathan Gryak, Kayvan Najarian
2021	J	`jnl`	Algebraic Methods for Tensor Data. SIAM J. Appl. Algebra Geom. Neriman Tokcan, Jonathan Gryak, Kayvan Najarian, Harm Derksen
2021	J	`jnl`	Automated Spleen Injury Detection Using 3D Active Contours and Machine Learning. Entropy Julie Wang, Alexander Wood, Chao Gao, Kayvan Najarian, Jonathan Gryak
2021	J	`jnl`	Automated detection of acute respiratory distress syndrome from chest X-Rays using Directionality Measure and deep learning features. Comput. Biol. Medicine Narathip Reamaroon, Michael W. Sjoding, Jonathan Gryak, Brian D. Athey, Kayvan Najarian, Harm Derksen
2021	—	`conf`	Automatic Segmentation of Dental Root Canal and Merging with Crown Shape. EMBC Romain Deleat-Besson, Celia Le, Najla Al Turkestani, Winston Zhang, Maxime Dumont, Serge Brosset, Juan Carlos Prieto, Lucia H. S. Cevidanes, Jonas Bianchi, Antonio C. Ruellas, Marcela Gurgel, Camila Massaro, Aron Aliaga Del Castillo, Marcos Ioshida, Marilia Yatabe, Erika Benavides, Hector Rios, Fabiana Soki, Gisele Neiva, Juan Fernando Aristizabal, Diego Rey, Maria Antonia Alvarez, Kayvan Najarian, Jonathan Gryak, Martin Styner, Jean-Christophe Fillion-Robin, Beatriz Paniagua, Reza Soroushmehr
2021	—	`conf`	Automatic Segmentation of Mandibular Ramus and Condyles. EMBC Celia Le, Romain Deleat-Besson, Juan Carlos Prieto, Serge Brosset, Maxime Dumont, Winston Zhang, Lucia H. S. Cevidanes, Jonas Bianchi, Antonio C. Ruellas, Liliane R. Gomes, Marcela Gurgel, Camila Massaro, Aron Aliaga Del Castillo, Marilia Yatabe, Erika Benavides, Fabiana Soki, Najla Al Turkestani, Karine Evangelista, João Roberto Gonçalves, Jose Valladares-Neto, Maria Alves Garcia Silva, Cauby Maia Chaves Junior, Fábio Costa, Daniela Gamba Garib, Heesoo Oh, Jonathan Gryak, Martin Styner, Jean-Christophe Fillion-Robin, Beatriz Paniagua, Kayvan Najarian, Reza Soroushmehr
2021	—	`conf`	Feature Selection for Privileged Modalities in Disease Classification. ML-CDS@MICCAI Winston Zhang, Najla Al Turkestani, Jonas Bianchi, Celia Le, Romain Deleat-Besson, Antonio C. Ruellas, Lucia H. S. Cevidanes, Marilia Yatabe, João Roberto Gonçalves, Erika Benavides, Fabiana Soki, Juan Prieto, Beatriz Paniagua, Jonathan Gryak, Kayvan Najarian, Reza Soroushmehr
2021	J	`jnl`	Learning Using Partially Available Privileged Information and Label Uncertainty: Application in Detection of Acute Respiratory Distress Syndrome. IEEE J. Biomed. Health Informatics Elyas Sabeti, Joshua Drews, Narathip Reamaroon, Elisa Warner, Michael W. Sjoding, Jonathan Gryak, Kayvan Najarian
2021	—	`conf`	Merging and Annotating Teeth and Roots from Automated Segmentation of Multimodal Images. ML-CDS@MICCAI Romain Deleat-Besson, Celia Le, Winston Zhang, Najla Al Turkestani, Lucia H. S. Cevidanes, Jonas Bianchi, Antonio C. Ruellas, Marcela Gurgel, Camila Massaro, Aron Aliaga Del Castillo, Marcos Ioshida, Marilia Yatabe, Erika Benavides, Hector Rios, Fabiana Soki, Gisele Neiva, Kayvan Najarian, Jonathan Gryak, Martin Styner, Juan Fernando Aristizabal, Diego Rey, Maria Antonia Alvarez, Loris Bert, Reza Soroushmehr, Juan Prieto
2021	J	`jnl`	Motion-based camera localization system in colonoscopy videos. Medical Image Anal. Heming Yao, Ryan W. Stidham, Zijun Gao, Jonathan Gryak, Kayvan Najarian
2021	J	`jnl`	Multimodal tensor-based method for integrative and continuous patient monitoring during postoperative cardiac care. Artif. Intell. Medicine Larry Hernandez, Renaid B. Kim, Neriman Tokcan, Harm Derksen, Ben E. Biesterveld, Alfred Croteau, Aaron M. Williams, Michael Mathis, Kayvan Najarian, Jonathan Gryak
2021	J	`jnl`	Predicting atrial fibrillation episodes with rapid ventricular rates associated with low levels of activity. BMC Medical Informatics Decis. Mak. Zhi Li, Kevin M. Wheelock, Sangeeta Lathkar-Pradhan, Hakan Oral, Daniel J. Clauw, Pujitha Gunaratne, Jonathan Gryak, Kayvan Najarian, Brahmajee K. Nallamothu, Hamid Ghanbari
2021	J	`jnl`	Prediction of cardiac arrhythmia using deterministic probabilistic finite-state automata. Biomed. Signal Process. Control. Zhi Li, Harm Derksen, Jonathan Gryak, Cheng Jiang, Zijun Gao, Winston Zhang, Hamid Ghanbari, Pujitha Gunaratne, Kayvan Najarian
2021	—	`conf`	Temporomandibular Joint Osteoarthritis Diagnosis Using Privileged Learning of Protein Markers. EMBC Winston Zhang, Jonas Bianchi, Najla Al Turkestani, Celia Le, Romain Deleat-Besson, Antonio C. Ruellas, Lucia H. S. Cevidanes, Marilia Yatabe, João Roberto Gonçalves, Erika Benavides, Fabiana Soki, Juan Prieto, Beatriz Paniagua, Kayvan Najarian, Jonathan Gryak, Reza Soroushmehr
2021	—	`conf`	Web infrastructure for data management, storage and computation. Biomedical Applications in Molecular, Structural, and Functional Imaging Serge Brosset, Maxime Dumont, Lucia H. S. Cevidanes, Reza Soroushmehr, Jonas Bianchi, Marcela Lima Gurgel, Romain Deleat-Besson, Celia Le, Antonio C. Ruellas, Marilia Yatabe, Liliane R. Gomes, João Roberto Gonçalves, Kayvan Najarian, Jonathan Gryak, Beatriz Paniagua, Martin Styner, Juan Carlos Prieto
2020	—	`conf`	3D Auto-Segmentation of Mandibular Condyles. EMBC Serge Brosset, Maxime Dumont, Jonas Bianchi, Antonio C. Ruellas, Lucia H. S. Cevidanes, Marilia Yatabe, João Roberto Gonçalves, Erika Benavides, Fabiana Soki, Beatriz Paniagua, Juan Prieto, Kayvan Najarian, Jonathan Gryak, Reza Soroushmehr
2020	J	`jnl`	Algebraic Methods for Tensor Data. CoRR Neriman Tokcan, Jonathan Gryak, Kayvan Najarian, Harm Derksen
2020	—	`conf`	Automated Classification of Osteosarcoma and Benign Tumors using RNA-seq and Plain X-ray. EMBC Olivia Alge, Lu Lu, Zhi Li, Yingqi Hua, Jonathan Gryak, Kayvan Najarian
2020	J	`jnl`	Automated hematoma segmentation and outcome prediction for patients with traumatic brain injury. Artif. Intell. Medicine Heming Yao, Craig A. Williamson, Jonathan Gryak, Kayvan Najarian
2020	J	`jnl`	Motion-based Camera Localization System in Colonoscopy Videos. CoRR Heming Yao, Ryan W. Stidham, Jonathan Gryak, Kayvan Najarian
2020	—	`conf`	Patient Specific Classification of Dental Root Canal and Crown Shape. ShapeMI@MICCAI Maxime Dumont, Juan-Carlos Prieto, Serge Brosset, Lucia H. S. Cevidanes, Jonas Bianchi, Antonio C. Ruellas, Marcela Gurgel, Camila Massaro, Aron Aliaga Del Castillo, Marcos Ioshida, Marilia Yatabe, Erika Benavides, Hector Rios, Fabiana Soki, Gisele Neiva, Juan Fernando Aristizabal, Diego Rey, Maria Antonia Alvarez, Kayvan Najarian, Jonathan Gryak, Martin Styner, Jean-Christophe Fillion-Robin, Beatriz Paniagua, Reza Soroushmehr
2020	—	`conf`	Predicting Poor Sleep Quality in Fibromyalgia with Wrist Sensors. EMBC Olivia Alge, S. M. Reza Soroushmehr, Jonathan Gryak, Anna Kratz, Kayvan Najarian
2020	J	`jnl`	Robust segmentation of lung in chest x-ray: applications in analysis of acute respiratory distress syndrome. BMC Medical Imaging Narathip Reamaroon, Michael W. Sjoding, Harm Derksen, Elyas Sabeti, Jonathan Gryak, Ryan P. Barbaro, Brian D. Athey, Kayvan Najarian
2020	J	`jnl`	Solving the Conjugacy Decision Problem via Machine Learning. Exp. Math. Jonathan Gryak, Robert M. Haralick, Delaram Kahrobaei
2020	J	`jnl`	Utilization of smartphone and tablet camera photographs to predict healing of diabetes-related foot ulcers. Comput. Biol. Medicine Renaid B. Kim, Jonathan Gryak, Abinash Mishra, Can Cui, S. M. Reza Soroushmehr, Kayvan Najarian, James S. Wrobel
2019	—	`conf`	An Unsupervised Feature Learning Approach to Reduce False Alarm Rate in ICUs. EMBC Behzad Ghazanfari, Fatemeh Afghah, Kayvan Najarian, Sajad Mousavi, Jonathan Gryak, James Todd
2019	J	`jnl`	An Unsupervised Feature Learning Approach to Reduce False Alarm Rate in ICUs. CoRR Behzad Ghazanfari, Fatemeh Afghah, Kayvan Najarian, Sajad Mousavi, Jonathan Gryak, James Todd
2019	—	`conf`	Automated Detection of Non-Informative Frames for Colonoscopy Through a Combination of Deep Learning and Feature Extraction. EMBC Heming Yao, Ryan W. Stidham, Reza Soroushmehr, Jonathan Gryak, Kayvan Najarian
2019	—	`conf`	Automated Optic Nerve Sheath Diameter Measurement Using Super-pixel Analysis. EMBC S. M. Reza Soroushmehr, Krishna Rajajee, Craig A. Williamson, Jonathan Gryak, Kayvan Najarian, Kevin Ward, Mohamad Hakam Tiba
2019	—	`conf`	Brain Hematoma Segmentation Using Active Learning and an Active Contour Model. IWBBIO (2) Heming Yao, Craig A. Williamson, Jonathan Gryak, Kayvan Najarian
2019	—	`conf`	Detection of Acute Respiratory Distress Syndrome by Incorporation of Label Uncertainty and Partially Available Privileged Information. EMBC Elyas Sabeti, Joshua Drews, Narathip Reamaroon, Jonathan Gryak, Michael W. Sjoding, Kayvan Najarian
2019	—	`conf`	Diabetic Wound Segmentation using Convolutional Neural Networks. EMBC Can Cui, Karl Thurnhofer-Hemsi, Reza Soroushmehr, Abinash Mishra, Jonathan Gryak, Enrique Domínguez, Kayvan Najarian, Ezequiel López-Rubio
2019	J	`jnl`	Learning Using Concave and Convex Kernels: Applications in Predicting Quality of Sleep and Level of Fatigue in Fibromyalgia. Entropy Elyas Sabeti, Jonathan Gryak, Harm Derksen, Craig Biwer, Sardar Ansari, Howard Isenstein, Anna Kratz, Kayvan Najarian
2019	—	`conf`	Markov Models for Detection of Ventricular Arrhythmia. EMBC Zhi Li, Harm Derksen, Jonathan Gryak, Mohsen Hooshmand, Alexander Wood, Hamid Ghanbari, Pujitha Gunaratne, Kayvan Najarian
2019	—	`conf`	Medical Diagnostics Based on Encrypted Medical Data. BICT Alexey Gribov, Kelsey Horan, Jonathan Gryak, Kayvan Najarian, Vladimir Shpilrain, S. M. Reza Soroushmehr, Delaram Kahrobaei
2019	—	`conf`	Midline Shift vs. Mid-Surface Shift: Correlation with Outcome of Traumatic Brain Injuries. BIBM Cheng Jiang, Jie Cao, Craig A. Williamson, Negar Farzaneh, Venkatakrishna Rajajee, Jonathan Gryak, Kayvan Najarian, S. M. Reza Soroushmehr
2019	—	`conf`	Using a Fuzzy Neural Network in Clinical Decision Support for Patients with Advanced Heart Failure. BIBM Heming Yao, Keith D. Aaronson, Lu Lu, Jonathan Gryak, Kayvan Najarian, Jessica R. Golbus
2018	—	`conf`	A Novel Atrial Fibrillation Prediction Algorithm Applicable to Recordings from Portable Devices. EMBC Zhi Li, Harm Derksen, Jonathan Gryak, Hamid Ghanbari, Pujitha Gunaratne, Kayvan Najarian
2018	—	`conf`	Automated Kidney Segmentation for Traumatic Injured Patients through Ensemble Learning and Active Contour Modeling. EMBC Negar Farzaneh, S. M. Reza Soroushmehr, Hirenkumar Patel, Alexander Wood, Jonathan Gryak, David Paul Fessell, Kayvan Najarian
2018	—	`conf`	Automatic Midline Shift Detection in Traumatic Brain Injury. EMBC Mohsen Hooshmand, S. M. Reza Soroushmehr, Craig A. Williamson, Jonathan Gryak, Kayvan Najarian
2018	—	`conf`	Classifying Osteosarcoma Using Meta-Analysis of Gene Expression. BIBM Olivia Alge, Jonathan Gryak, Yingqi Hua, Kayvan Najarian
2018	—	`conf`	Comparative Study on Heart Rate Variability Analysis for Atrial Fibrillation Detection in Short Single-Lead ECG Recordings. EMBC An Nguyen, Sardar Ansari, Mohsen Hooshmand, Kaiwen Lin, Hamid Ghanbari, Jonathan Gryak, Kayvan Najarian
2018	—	`conf`	Filter-Pruned 3D Convolutional Neural Network for Drowsiness Detection. EMBC Heming Yao, Wei Zhang, Rajesh K. Malhan, Jonathan Gryak, Kayvan Najarian
2018	—	`conf`	Fully Automated Spleen Localization And Segmentation Using Machine Learning And 3D Active Contours. EMBC Alexander Wood, S. M. Reza Soroushmehr, Negar Farzaneh, David Paul Fessell, Kevin R. Ward, Jonathan Gryak, Delaram Kahrobaei, Kayvan Najarian
2018	—	`conf`	Hematoma Segmentation Using Dilated Convolutional Neural Network. EMBC Heming Yao, Craig A. Williamson, S. M. Reza Soroushmehr, Jonathan Gryak, Kayvan Najarian
2018	—	`conf`	Noise Detection in Electrocardiography Signal for Robust Heart Rate Variability Analysis: A Deep Learning Approach. EMBC Sardar Ansari, Jonathan Gryak, Kayvan Najarian
2018	—	`conf`	Osteosarcoma Patients Classification Using Plain X-Rays and Metabolomic Data. EMBC Rebecca Shen, Zhi Li, Linglin Zhang, Yingqi Hua, Min Mao, Zhicong Li, Zhengdong Cai, Yunping Qiu, Jonathan Gryak, Kayvan Najarian
2018	—	`conf`	Supraventricular Tachycardia Detection via Machine Learning Algorithms. BIBM Zhi Li, Harm Derksen, Jonathan Gryak, Mohsen Hooshmand, Alexander Wood, Hamid Ghanbari, Pujitha Gunaratne, Kayvan Najarian
2017	—	`—`	Solving Algorithmic Problems in Finitely Presented Groups via Machine Learning. Jonathan Gryak
2017	J	`jnl`	Solving the Conjugacy Decision Problem via Machine Learning. CoRR Jonathan Gryak, Robert M. Haralick, Delaram Kahrobaei
2016	J	`jnl`	On the Conjugacy Problem in Certain Metabelian Groups. CoRR Jonathan Gryak, Delaram Kahrobaei, Conchita Martínez-Pérez
2016	J	`jnl`	The Status of Polycyclic Group-Based Cryptography: A Survey and Open Problems. CoRR Jonathan Gryak, Delaram Kahrobaei
2016	J	`jnl`	The status of polycyclic group-based cryptography: A survey and open problems. Groups Complex. Cryptol. Jonathan Gryak, Delaram Kahrobaei