Jonathan G. Lees

25 papers Journal 24
YearRankTypeTitle / Venue / Authors
2021 J jnl
Biological impact of mutually exclusive exon switching.
PLoS Comput. Biol.
Su Datt Lam, M. Madan Babu, Jonathan G. Lees, Christine A. Orengo
2021 J jnl
CATH: increased structural coverage of functional space.
Nucleic Acids Res.
Ian Sillitoe, Nicola Bordin, Natalie L. Dawson, Vaishali P. Waman, Paul Ashford, Harry M. Scholes, Camilla S. M. Pang, Laurel Woodridge, Clemens Rauer, Neeladri Sen, Mahnaz Abbasian, Sean Le Cornu, Su Datt Lam, Karel Berka, Ivana Hutarová Vareková, Radka Svobodová Vareková, Jonathan G. Lees, Christine A. Orengo
2019 J jnl
CATH: expanding the horizons of structure-based functional annotations for genome sequences.
Nucleic Acids Res.
Ian Sillitoe, Natalie L. Dawson, Tony E. Lewis, Sayoni Das, Jonathan G. Lees, Paul Ashford, Adeyelu Tolulope, Harry M. Scholes, Ilya Senatorov, Andra Bujan, Fatima Ceballos Rodriguez-Conde, Benjamin Dowling, Janet M. Thornton, Christine A. Orengo
2019 — ch.
Protein Structure Classification.
Encyclopedia of Bioinformatics and Computational Biology (2)
Natalie L. Dawson, Sayoni Das, Jonathan G. Lees, Christine A. Orengo
2019 J jnl
cath-resolve-hits: a new tool that resolves domain matches suspiciously quickly.
Bioinform.
Tony E. Lewis, Ian Sillitoe, Jonathan G. Lees
2018 J jnl
Gene3D: Extensive prediction of globular domains in proteins.
Nucleic Acids Res.
Tony E. Lewis, Ian Sillitoe, Natalie L. Dawson, Su Datt Lam, Tristan Clarke, David A. Lee, Christine A. Orengo, Jonathan G. Lees
2018 J jnl
Gene3D: Extensive prediction of globular domains in proteins.
Nucleic Acids Res.
Tony E. Lewis, Ian Sillitoe, Natalie L. Dawson, Su Datt Lam, Tristan Clarke, David A. Lee, Christine A. Orengo, Jonathan G. Lees
2017 J jnl
Analysis of temporal transcription expression profiles reveal links between protein function and developmental stages of Drosophila melanogaster.
PLoS Comput. Biol.
Cen Wan, Jonathan G. Lees, Federico Minneci, Christine A. Orengo, David T. Jones
2017 J jnl
CATH: an expanded resource to predict protein function through structure and sequence.
Nucleic Acids Res.
Natalie L. Dawson, Tony E. Lewis, Sayoni Das, Jonathan G. Lees, David A. Lee, Paul Ashford, Christine A. Orengo, Ian Sillitoe
2016 J jnl
Functional classification of CATH superfamilies: a domain-based approach for protein function annotation.
Bioinform.
Sayoni Das, David A. Lee, Ian Sillitoe, Natalie L. Dawson, Jonathan G. Lees, Christine A. Orengo
2016 J jnl
Gene3D: expanding the utility of domain assignments.
Nucleic Acids Res.
Su Datt Lam, Natalie L. Dawson, Sayoni Das, Ian Sillitoe, Paul Ashford, David A. Lee, Sonja Lehtinen, Christine A. Orengo, Jonathan G. Lees
2015 J jnl
CATH FunFHMMer web server: protein functional annotations using functional family assignments.
Nucleic Acids Res.
Sayoni Das, Ian Sillitoe, David A. Lee, Jonathan G. Lees, Natalie L. Dawson, John Ward, Christine A. Orengo
2015 J jnl
CATH: comprehensive structural and functional annotations for genome sequences.
Nucleic Acids Res.
Ian Sillitoe, Tony E. Lewis, Alison L. Cuff, Sayoni Das, Paul Ashford, Natalie L. Dawson, Nicholas Furnham, Roman A. Laskowski, David A. Lee, Jonathan G. Lees, Sonja Lehtinen, Romain A. Studer, Janet M. Thornton, Christine A. Orengo
2015 J jnl
FUN-L: gene prioritization for RNAi screens.
Bioinform.
Jonathan G. Lees, Jean-Karim Hériché, Ian Morilla, José María Fernández, Priit Adler, Martin Krallinger, Jaak Vilo, Alfonso Valencia, Jan Ellenberg, Juan A. G. Ranea, Christine A. Orengo
2015 J jnl
Functional classification of CATH superfamilies: a domain-based approach for protein function annotation.
Bioinform.
Sayoni Das, David A. Lee, Ian Sillitoe, Natalie L. Dawson, Jonathan G. Lees, Christine A. Orengo
2014 J jnl
Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis.
Nucleic Acids Res.
Jonathan G. Lees, David A. Lee, Romain A. Studer, Natalie L. Dawson, Ian Sillitoe, Sayoni Das, Corin Yeats, Benoit H. Dessailly, Robert Rentzsch, Christine A. Orengo
2013 J jnl
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures.
Nucleic Acids Res.
Ian Sillitoe, Alison L. Cuff, Benoit H. Dessailly, Natalie L. Dawson, Nicholas Furnham, David A. Lee, Jonathan G. Lees, Tony E. Lewis, Romain A. Studer, Robert Rentzsch, Corin Yeats, Janet M. Thornton, Christine A. Orengo
2012 J jnl
Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis.
Nucleic Acids Res.
Jonathan G. Lees, Corin Yeats, James Richard Perkins, Ian Sillitoe, Robert Rentzsch, Benoit H. Dessailly, Christine A. Orengo
2011 J jnl
The Gene3D Web Services: a platform for identifying, annotating and comparing structural domains in protein sequences.
Nucleic Acids Res.
Corin Yeats, Jonathan G. Lees, Phil Carter, Ian Sillitoe, Christine A. Orengo
2010 J jnl
Finding the "Dark Matter" in Human and Yeast Protein Network Prediction and Modelling.
PLoS Comput. Biol.
Juan A. G. Ranea, Ian Morilla, Jonathan G. Lees, Adam James Reid, Corin Yeats, Andrew B. Clegg, Francisca Sánchez-Jiménez, Christine A. Orengo
2010 J jnl
Gene3D: merging structure and function for a Thousand genomes.
Nucleic Acids Res.
Jonathan G. Lees, Corin Yeats, Oliver Redfern, Andrew B. Clegg, Christine A. Orengo
2008 J jnl
Combining sequence-based prediction methods and circular dichroism and infrared spectroscopic data to improve protein secondary structure determinations.
BMC Bioinform.
Jonathan G. Lees, Robert W. Janes
2008 J jnl
Gene3D: comprehensive structural and functional annotation of genomes.
Nucleic Acids Res.
Corin Yeats, Jonathan G. Lees, Adam James Reid, Paul Kellam, Nigel J. Martin, Xinhui Liu, Christine A. Orengo
2006 J jnl
A reference database for circular dichroism spectroscopy covering fold and secondary structure space.
Bioinform.
Jonathan G. Lees, Andrew J. Miles, Frank Wien, B. A. Wallace
2006 J jnl
Novel methods for secondary structure determination using low wavelength (VUV) circular dichroism spectroscopic data.
BMC Bioinform.
Jonathan G. Lees, Andrew J. Miles, Robert W. Janes, B. A. Wallace