Jonathan E. Rubin

75 papers C 1Journal 74

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	How the dynamic interplay of cortico-basal ganglia-thalamic pathways shapes the time course of deliberation and commitment. PLoS Comput. Biol. Zhuojun Yu, Timothy D. Verstynen, Jonathan E. Rubin
2025	J	`jnl`	A Nonlinear Map Describing Relaxation to Cluster States in an Adapting Neuronal Network. SIAM J. Appl. Dyn. Syst. Ka Nap Tse, G. Bard Ermentrout, Jonathan E. Rubin
2025	J	`jnl`	Calculation of Expected Reward Rate in a Two-Alternative Decision Process. SIAM J. Appl. Math. Baram Sosis, Jonathan E. Rubin
2025	J	`jnl`	Cardiogenic and chronobiological mechanisms in seizure-induced sinus arrhythmias. PLoS Comput. Biol. Pan Li, Sangbo Lee, Kwang-Yeon Choi, Jonathan E. Rubin, Jae Kyoung Kim
2025	J	`jnl`	Erratum for "Calculation of Expected Reward Rate in a Two-Alternative Decision Process", SIAM J. Appl. Math. Baram Sosis, Jonathan E. Rubin
2025	J	`jnl`	How cortico-basal ganglia-thalamic subnetworks can shift decision policies to increase reward rate. PLoS Comput. Biol. Jyotika Bahuguna, Timothy D. Verstynen, Jonathan E. Rubin
2025	J	`jnl`	Rhythm generation, robustness, and control in stick insect locomotion: modeling and analysis. J. Comput. Neurosci. Zahra Aminzare, Jonathan E. Rubin
2024	J	`jnl`	Introduction to the SIAP Special Section on the Life Sciences. SIAM J. Appl. Math. Simone Bianco, Jonathan E. Rubin
2023	J	`jnl`	BioNN: Bio-Mimetic Neural Networks on Hardware Using Nonlinear Multi-Timescale Mixed-Feedback Control for Neuromodulatory Bursting Rhythms. IEEE J. Emerg. Sel. Topics Circuits Syst. Kangni Liu, Shahin Hashemkhani, Jonathan E. Rubin, Rajkumar Kubendran
2023	C	`conf`	Neuromorphic Networks using Nonlinear Mixed-feedback Multi-timescale Bio-mimetic Neurons. ISCAS Kangni Liu, Shahin Hashemkhani, Jonathan E. Rubin, Rajkumar Kubendran
2023	J	`jnl`	Sensitivity to Control Signals in Triphasic Rhythmic Neural Systems: A Comparative Mechanistic Analysis via Infinitesimal Local Timing Response Curves. Neural Comput. Zhuojun Yu, Jonathan E. Rubin, Peter J. Thomas
2023	J	`jnl`	Slow negative feedback enhances robustness of square-wave bursting. J. Comput. Neurosci. Sushmita Rose John, Bernd Krauskopf, Hinke M. Osinga, Jonathan E. Rubin
2023	J	`jnl`	Threshold Selection for Brain Connectomes. Brain Connect. Nicholas D. Theis, Jonathan E. Rubin, Joshua Cape, Satish Iyengar, Konasale M. Prasad
2022	J	`jnl`	Activity Patterns of a Two-Timescale Neuronal Ring Model with Voltage-Dependent, Piecewise Smooth Inhibitory Coupling. SIAM J. Appl. Dyn. Syst. Choongseok Park, Jonathan E. Rubin
2022	J	`jnl`	Dynamics of ramping bursts in a respiratory neuron model. J. Comput. Neurosci. Muhammad U. Abdulla, Ryan S. Phillips, Jonathan E. Rubin
2022	J	`jnl`	Identifying control ensembles for information processing within the cortico-basal ganglia-thalamic circuit. PLoS Comput. Biol. Catalina Vich, Matthew Clapp, Jonathan E. Rubin, Timothy D. Verstynen
2022	J	`jnl`	On the Nonexistence of Terrestrial Canards: Linking Canards and Rivers. SIAM J. Appl. Dyn. Syst. Benjamin Letson, Jonathan E. Rubin
2022	J	`jnl`	Transmission of delta band (0.5-4 Hz) oscillations from the globus pallidus to the substantia nigra pars reticulata in dopamine depletion. J. Comput. Neurosci. Timothy C. Whalen, John E. Parker, Aryn H. Gittis, Jonathan E. Rubin
2021	J	`jnl`	Type III Responses to Transient Inputs in Hybrid Nonlinear Neuron Models. SIAM J. Appl. Dyn. Syst. Jonathan E. Rubin, Justyna Signerska-Rynkowska, Jonathan D. Touboul
2020	J	`jnl`	Corticostriatal synaptic weight evolution in a two-alternative forced choice task: a computational study. Commun. Nonlinear Sci. Numer. Simul. Catalina Vich, Kyle Dunovan, Timothy D. Verstynen, Jonathan E. Rubin
2020	J	`jnl`	LOR for Analysis of Periodic Dynamics: A One-Stop Shop Approach. SIAM J. Appl. Dyn. Syst. Benjamin Letson, Jonathan E. Rubin
2020	J	`jnl`	The roles of ascending sensory signals and top-down central control in the entrainment of a locomotor CPG. Biol. Cybern. Marcello G. Codianni, Silvia Daun, Jonathan E. Rubin
2019	J	`jnl`	Correction: From Inverse Problems in Mathematical Physiology to Quantitative Differential Diagnoses. PLoS Comput. Biol. Sven Zenker, Jonathan E. Rubin, Gilles Clermont
2019	J	`jnl`	Effects of persistent sodium current blockade in respiratory circuits depend on the pharmacological mechanism of action and network dynamics. PLoS Comput. Biol. Ryan S. Phillips, Jonathan E. Rubin
2019	J	`jnl`	On the Importance of the Jacobian Determinant in Parameter Inference for Random Parameter and Random Measurement Error Models. SIAM/ASA J. Uncertain. Quantification David Swigon, Shelby R. Stanhope, Sven Zenker, Jonathan E. Rubin
2019	J	`jnl`	Reward-driven changes in striatal pathway competition shape evidence evaluation in decision-making. PLoS Comput. Biol. Kyle Dunovan, Catalina Vich, Matthew Clapp, Timothy D. Verstynen, Jonathan E. Rubin
2019	J	`jnl`	Robustness of respiratory rhythm generation across dynamic regimes. PLoS Comput. Biol. Jonathan E. Rubin, Jeffrey C. Smith
2018	J	`jnl`	A New Frame for an Old (Phase) Portrait: Finding Rivers and Other Flow Features in the Plane. SIAM J. Appl. Dyn. Syst. Benjamin Letson, Jonathan E. Rubin
2018	J	`jnl`	Numerical optimization of coordinated reset stimulation for desynchronizing neuronal network dynamics. J. Comput. Neurosci. Shigeru Kubota, Jonathan E. Rubin
2017	J	`jnl`	Analysis of Interacting Local Oscillation Mechanisms in Three-Timescale Systems. SIAM J. Appl. Math. Benjamin Letson, Jonathan E. Rubin, Theodore Vo
2017	J	`jnl`	Robustness of Solutions of the Inverse Problem for Linear Dynamical Systems with Uncertain Data. SIAM/ASA J. Uncertain. Quantification Shelby R. Stanhope, Jonathan E. Rubin, David Swigon
2017	J	`jnl`	Sufficient Conditions for Graphicality of Bidegree Sequences. SIAM J. Discret. Math. David E. Burstein, Jonathan E. Rubin
2016	J	`jnl`	Multiple timescale mixed bursting dynamics in a respiratory neuron model. J. Comput. Neurosci. Yangyang Wang, Jonathan E. Rubin
2015	J	`jnl`	Averaging, Folded Singularities, and Torus Canards: Explaining Transitions between Bursting and Spiking in a Coupled Neuron Model. SIAM J. Appl. Dyn. Syst. Kerry-Lyn Roberts, Jonathan E. Rubin, Martin Wechselberger
2015	J	`jnl`	Degree switching and partitioning for enumerating graphs to arbitrary orders of accuracy. CoRR David E. Burstein, Jonathan E. Rubin
2015	J	`jnl`	Strategies to Maximize Burst Lengths in Rhythmic Anti-Phase Activity of Networks with Reciprocal Inhibition. Int. J. Bifurc. Chaos Amitabha Bose, Jonathan E. Rubin
2015	J	`jnl`	Sufficient Conditions for Graphicality of Bidegree Sequences. CoRR David E. Burstein, Jonathan E. Rubin
2015	J	`jnl`	Understanding and Distinguishing Three-Time-Scale Oscillations: Case Study in a Coupled Morris-Lecar System. SIAM J. Appl. Dyn. Syst. Pingyu Nan, Yangyang Wang, Vivien Kirk, Jonathan E. Rubin
2014	J	`jnl`	A model for low-frequency bursts in subthalamic nucleus neurons. J. Robotics Netw. Artif. Life Shigeru Kubota, Jonathan E. Rubin
2014	J	`jnl`	Identifiability of Linear and Linear-in-Parameters Dynamical Systems from a Single Trajectory. SIAM J. Appl. Dyn. Syst. Shelby R. Stanhope, Jonathan E. Rubin, David Swigon
2013	J	`jnl`	Cooperation of intrinsic bursting and calcium oscillations underlying activity patterns of model pre-Bötzinger complex neurons. J. Comput. Neurosci. Choongseok Park, Jonathan E. Rubin
2013	J	`jnl`	Locally Contractive Dynamics in Generalized Integrate-and-Fire Neurons. SIAM J. Appl. Dyn. Syst. Nicolas D. Jimenez, Stefan Mihalas, Richard Brown, Ernst Niebur, Jonathan E. Rubin
2012	J	`jnl`	Short Term Synaptic Depression Imposes a Frequency Dependent Filter on Synaptic Information Transfer. PLoS Comput. Biol. Robert Rosenbaum, Jonathan E. Rubin, Brent Doiron
2011	J	`jnl`	Correlation transfer from basal ganglia to thalamus in Parkinson's disease. Frontiers Comput. Neurosci. Pamela Reitsma, Brent Doiron, Jonathan E. Rubin
2011	J	`jnl`	Interacting oscillations in neural control of breathing: modeling and qualitative analysis. J. Comput. Neurosci. Jonathan E. Rubin, Bartholomew J. Bacak, Yaroslav I. Molkov, Natalia Shevtsova, Jeffrey C. Smith, Ilya A. Rybak
2011	J	`jnl`	Interaction of Canard and Singular Hopf Mechanisms in a Neural Model. SIAM J. Appl. Dyn. Syst. Rodica Curtu, Jonathan E. Rubin
2011	J	`jnl`	Interactions of persistent sodium and calcium-activated nonspecific cationic currents yield dynamically distinct bursting regimes in a model of respiratory neurons. J. Comput. Neurosci. Justin R. Dunmyre, Christopher A. Del Negro, Jonathan E. Rubin
2011	J	`jnl`	Multi-site stimulation of subthalamic nucleus diminishes thalamocortical relay errors in a biophysical network model. Neural Networks Yixin Guo, Jonathan E. Rubin
2011	J	`jnl`	The Interaction of Intrinsic Dynamics and Network Topology in Determining Network Burst Synchrony. Frontiers Comput. Neurosci. Chris Gaiteri, Jonathan E. Rubin
2010	J	`jnl`	A variety of competitive properties arising from STDP incorporating metaplastic regulation. Artif. Life Robotics Shigeru Kubota, Jonathan E. Rubin, Tatsuo Kitajima, Takao Nakamura
2010	J	`jnl`	First return maps for the dynamics of synaptically coupled conditional bursters. Biol. Cybern. Evandro Manica, Georgi S. Medvedev, Jonathan E. Rubin
2010	J	`jnl`	Optimal Intrinsic Dynamics for Bursting in a Three-Cell Network. SIAM J. Appl. Dyn. Syst. Justin R. Dunmyre, Jonathan E. Rubin
2010	J	`jnl`	Stimulus-Driven Traveling Solutions in Continuum Neuronal Models with a General Smooth Firing Rate Function. SIAM J. Appl. Math. G. Bard Ermentrout, Jozsi Z. Jalics, Jonathan E. Rubin
2009	J	`jnl`	Competition Between Transients in the Rate of Approach to a Fixed Point. SIAM J. Appl. Dyn. Syst. Judy Day, Jonathan E. Rubin, Carson C. Chow
2009	J	`jnl`	Control of oscillation periods and phase durations in half-center central pattern generators: a comparative mechanistic analysis. J. Comput. Neurosci. Silvia Daun, Jonathan E. Rubin, Ilya A. Rybak
2009	J	`jnl`	Modulation of LTP/LTD balance in STDP by an activity-dependent feedback mechanism. Neural Networks Shigeru Kubota, Jonathan E. Rubin, Tatsuo Kitajima
2007	J	`jnl`	Burst synchronization. Scholarpedia Jonathan E. Rubin
2007	J	`jnl`	From Inverse Problems in Mathematical Physiology to Quantitative Differential Diagnoses. PLoS Comput. Biol. Sven Zenker, Jonathan E. Rubin, Gilles Clermont
2007	J	`jnl`	Giant squid-hidden canard: the 3D geometry of the Hodgkin-Huxley model. Biol. Cybern. Jonathan E. Rubin, Martin Wechselberger
2007	J	`jnl`	The Firing of an Excitable Neuron in the Presence of Stochastic Trains of Strong Synaptic Inputs. Neural Comput. Jonathan E. Rubin, Kresimir Josic
2005	J	`jnl`	Deriving Information about Architecture from Activity Patterns in Coupled Cell Systems. SIAM J. Appl. Dyn. Syst. Kresimir Josic, Jonathan E. Rubin
2005	J	`jnl`	Spike-timing dependent plasticity as a mechanism for ocular dominance shift. Neurocomputing Beth Ann Siegler, Maureen Ritchey, Jonathan E. Rubin
2005	J	`jnl`	Surprising Effects of Synaptic Excitation. J. Comput. Neurosci. Jonathan E. Rubin
2005	J	`jnl`	The Dynamic Range of Bursting in a Model Respiratory Pacemaker Network. SIAM J. Appl. Dyn. Syst. Janet Best, Alla Borisyuk, Jonathan E. Rubin, David Terman, Martin Wechselberger
2004	J	`jnl`	Analysis of a Canard Mechanism by Which Excitatory Synaptic Coupling Can Synchronize Neurons at Low Firing Frequencies. SIAM J. Appl. Math. Jonathan D. Drover, Jonathan E. Rubin, Jianzhong Su, Bard Ermentrout
2004	J	`jnl`	High Frequency Stimulation of the Subthalamic Nucleus Eliminates Pathological Thalamic Rhythmicity in a Computational Model. J. Comput. Neurosci. Jonathan E. Rubin, David Terman
2004	J	`jnl`	Sustained Spatial Patterns of Activity in Neuronal Populations without Recurrent Excitation. SIAM J. Appl. Math. Jonathan E. Rubin, William C. Troy
2003	J	`jnl`	The effect of spike redistribution in a reciprocally connected pair of neurons with spike timing-dependent plasticity. Neurocomputing Gerardina Hernández, Jonathan E. Rubin, Paul W. Munro
2003	J	`jnl`	Traveling waves in a one-dimensional integrate-and-fire neural network with finite support connectivity. Neurocomputing Remus Osan, Jonathan E. Rubin, Rodica Curtu, Bard Ermentrout
2002	J	`jnl`	Regular Traveling Waves in a One-Dimensional Network of Theta Neurons. SIAM J. Appl. Math. Bard Ermentrout, Jonathan E. Rubin, Remus Osan
2002	J	`jnl`	Synchronized Activity and Loss of Synchrony Among Heterogeneous Conditional Oscillators. SIAM J. Appl. Dyn. Syst. Jonathan E. Rubin, David Terman
2001	J	`jnl`	Localized Bumps of Activity Sustained by Inhibition in a Two-Layer Thalamic Network. J. Comput. Neurosci. Jonathan E. Rubin, David Terman, Carson C. Chow
2001	J	`jnl`	Synchronous rhythms in a model for the indirect pathway of the basal ganglia. Neurocomputing David Terman, Jonathan E. Rubin, Alice C. Yew, Charles J. Wilson
2000	J	`jnl`	Geometric Analysis of Population Rhythms in Synaptically Coupled Neuronal Networks. Neural Comput. Jonathan E. Rubin, David Terman
1999	J	`jnl`	Geometric analysis of neuronal firing patterns in network models with fast inhibitory synapses. Neurocomputing Jonathan E. Rubin, David Terman