Jonathan Crabtree

28 papers A 1B 1Journal 18Unranked 8
YearRankTypeTitle / Venue / Authors
2023 J jnl
Contextual in situ help for visual data interfaces.
Inf. Vis.
Pramod Chundury, Mehmet Adil Yalçin, Jonathan Crabtree, Anup Mahurkar, Lisa M. Shulman, Niklas Elmqvist
2023 J jnl
The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain.
Nucleic Acids Res.
Seth A. Ament, Ricky S. Adkins, Robert Carter, Elena Chrysostomou, Carlo Colantuoni, Jonathan Crabtree, Heather Huot Creasy, Kylee Degatano, Victor Felix, Peter Gandt, Gwenn a Garden, Michelle G. Giglio, Brian R. Herb, Farzaneh Khajouei, Elizabeth Kiernan, Carrie McCracken, Kennedy McDaniel, Suvarna Nadendla, Lance Nickel, Dustin Olley, Joshua Orvis, Joseph P. Receveur, Mike Schor, Shreyash Sonthalia, Timothy L. Tickle, Jessica Way, Ronna Hertzano, Anup A. Mahurkar, Owen R. White
2021 J jnl
HMPDACC: a Human Microbiome Project Multi-omic data resource.
Nucleic Acids Res.
Heather Huot Creasy, Victor Felix, Jain Aluvathingal, Jonathan Crabtree, Olukemi O. Ifeonu, James Matsumura, Carrie McCracken, Lance Nickel, Joshua Orvis, Mike Schor, Michelle G. Giglio, Anup Mahurkar, Owen White
2014 J jnl
Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG.
Bioinform.
Jonathan Crabtree, Sonia Agrawal, Anup Mahurkar, Garry S. A. Myers, David A. Rasko, Owen White
2013 — conf
DataBridge: Building an E-science Collaboration Environment Tool for Linking Diverse Datasets into a Socio-metric Network.
IASSIST Conference
Jonathan Crabtree
2013 — conf
Expansion of the Odum Institute Dataverse Network: Forming Partnerships, Harnessing Infrastructures, and increasing Preservation of Research Data.
IASSIST Conference
Jonathan Crabtree, Lynda Kellam
2012 J jnl
The
Nucleic Acids Res.
Martha B. Arnaud, Gustavo C. Cerqueira, Diane O. Inglis, Marek S. Skrzypek, Jonathan Binkley, Marcus C. Chibucos, Jonathan Crabtree, Clinton Howarth, Joshua Orvis, Prachi Shah, Farrell Wymore, Gail Binkley, Stuart R. Miyasato, Matt Simison, Gavin Sherlock, Jennifer R. Wortman
2012 J jnl
Using Sybil for interactive comparative genomics of microbes on the web.
Bioinform.
David R. Riley, Samuel V. Angiuoli, Jonathan Crabtree, Julie C. Dunning Hotopp, Hervé Tettelin
2011 — conf
Virtual Archiving for Public Opinion Polls.
iPRES
Jonathan Crabtree
2010 — conf
Automated DDI Metadata Harvesting and Replication for Preservation Purposes within iRODS.
IASSIST
Jonathan Crabtree, Antoine de Torcy, Mason Chua
2010 J jnl
Ergatis: a web interface and scalable software system for bioinformatics workflows.
Bioinform.
Joshua Orvis, Jonathan Crabtree, Kevin Galens, Aaron Gussman, Jason M. Inman, Eduardo Lee, Sreenath Nampally, David R. Riley, Jaideep P. Sundaram, Victor Felix, Brett Whitty, Anup Mahurkar, Jennifer R. Wortman, Owen White, Samuel V. Angiuoli
2010 J jnl
Pathema: a clade-specific bioinformatics resource center for pathogen research.
Nucleic Acids Res.
Lauren M. Brinkac, Tanja Davidsen, Erin Beck, Anuradha Ganapathy, Elisabet Caler, Robert J. Dodson, A. Scott Durkin, Derek M. Harkins, Hernan Lorenzi, Ramana Madupu, Yinong Sebastian, Susmita Shrivastava, Mathangi Thiagarajan, Joshua Orvis, Jaideep P. Sundaram, Jonathan Crabtree, Kevin Galens, Yongmei Zhao, Jason M. Inman, Robert Montgomery, Seth A. Schobel, Kevin Galinsky, David M. Tanenbaum, Adam Resnick, Nikhat Zafar, Owen White, Granger G. Sutton
2010 J jnl
The
Nucleic Acids Res.
Martha B. Arnaud, Marcus C. Chibucos, Maria C. Costanzo, Jonathan Crabtree, Diane O. Inglis, Adil Lotia, Joshua Orvis, Prachi Shah, Marek S. Skrzypek, Gail Binkley, Stuart R. Miyasato, Jennifer R. Wortman, Gavin Sherlock
2009 — conf
Extracting and Ingesting DDI Metadata and Digital Objects from a Data Archive into the iRODS Extension of the NARA TPAP Using the OAI-PMH.
eScience
Jewel H. Ward, Antoine de Torcy, Mason Chua, Jonathan Crabtree
2009 J jnl
The HuRef Browser: a web resource for individual human genomics.
Nucleic Acids Res.
Nelson Axelrod, Yuan Lin, Pauline C. Ng, Timothy B. Stockwell, Jonathan Crabtree, Jiaqi Huang, Ewen Kirkness, Robert Strausberg, Marvin Frazier, J. Craig Venter, Saul Kravitz, Samuel Levy
2008 J jnl
IDEA: Interactive Display for Evolutionary Analyses.
BMC Bioinform.
Amy Egan, Anup Mahurkar, Jonathan Crabtree, Jonathan H. Badger, Jane M. Carlton, Joana C. Silva
2008 — conf
Integrating ddi metadata into the nara transcontinental persistent archive prototype via the oai-pmh.
JCDL
Jewel H. Ward, Jonathan Crabtree
2004 J jnl
ApiEST-DB: analyzing clustered EST data of the apicomplexan parasites.
Nucleic Acids Res.
Li Li, Jonathan Crabtree, Steve Fischer, Deborah F. Pinney, Christian J. Stoeckert Jr., L. David Sibley, David S. Roos
2003 J jnl
PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data.
Nucleic Acids Res.
Amit Bahl, Brian P. Brunk, Jonathan Crabtree, Martin J. Fraunholz, Bindu Gajria, Gregory R. Grant, Hagai Ginsburg, Dinesh Gupta, Jessica C. Kissinger, Philip Labo, Li Li, Matthew D. Mailman, Arthur J. Milgram, David S. Pearson, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr., Patricia L. Whetzel
2002 J jnl
PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished).
Nucleic Acids Res.
Amit Bahl, Brian P. Brunk, Ross L. Coppel, Jonathan Crabtree, Sharon J. Diskin, Martin J. Fraunholz, Gregory R. Grant, Dinesh Gupta, Robert L. Huestis, Jessica C. Kissinger, Philip Labo, Li Li, Shannon K. McWeeney, Arthur J. Milgram, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr.
2001 J jnl
A relational schema for both array-based and SAGE gene expression experiments.
Bioinform.
Christian J. Stoeckert Jr., Angel D. Pizarro, Elisabetta Manduchi, M. Gibson, Brian P. Brunk, Jonathan Crabtree, Jonathan Schug, Shai Shen-Orr, G. Christian Overton
2001 J jnl
K2/Kleisli and GUS: Experiments in integrated access to genomic data sources.
IBM Syst. J.
Susan B. Davidson, Jonathan Crabtree, Brian P. Brunk, Jonathan Schug, Val Tannen, G. Christian Overton, Christian J. Stoeckert Jr.
1999 J jnl
bioWidgets: data interaction components for genomics.
Bioinform.
Steve Fischer, Jonathan Crabtree, Brian P. Brunk, M. Gibson, G. Christian Overton
1995 — conf
Behavioral Control for Real-Time Simulated Human Agents.
SI3D
John P. Granieri, Welton Becket, Barry D. Reich, Jonathan Crabtree, Norman I. Badler
1995 J jnl
Production and Playback of Human Figure Motion for Visual Simulation.
ACM Trans. Model. Comput. Simul.
John P. Granieri, Jonathan Crabtree, Norman I. Badler
1995 — conf
Production and playback of human figure motion for 3D virtual environments.
VRAIS
John P. Granieri, Jonathan Crabtree, Norman I. Badler
1993 B conf
An Operational Semantics for TOOPLE: A Statically-Typed Object-Oriented Programming Language.
MFPS
Kim B. Bruce, Jonathan Crabtree, Gerlad Kanapathy
1993 A conf
Safe and Decidable Type Checking in an Object-Oriented Language.
OOPSLA
Kim B. Bruce, Jonathan Crabtree, Thomas P. Murtagh, Robert van Gent, Allyn Dimock, Robert Muller