Jon Pey

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2022 J jnl
ELIMINATOR: essentiality analysis using multisystem networks and integer programming.
BMC Bioinform.
Asier Antoranz, María Ortiz, Jon Pey
2016 J jnl
Direct calculation of minimal cut sets involving a specific reaction knock-out.
Bioinform.
Luis Tobalina, Jon Pey, Francisco J. Planes
2015 J jnl
Advances in network-based metabolic pathway analysis and gene expression data integration.
Briefings Bioinform.
Alberto Rezola, Jon Pey, Luis Tobalina, Ángel Rubio, John E. Beasley, Francisco J. Planes
2015 J jnl
Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data.
Bioinform.
Luis Tobalina, Rafael Bargiela, Jon Pey, Florian-Alexander Herbst, Iván Lores, David Rojo, Coral Barbas, Ana I. Peláez, Jesús Sánchez, Martin von Bergen, Jana Seifert, Manuel Ferrer, Francisco J. Planes
2015 J jnl
TreeEFM: calculating elementary flux modes using linear optimization in a tree-based algorithm.
Bioinform.
Jon Pey, Juan A. Villar, Luis Tobalina, Alberto Rezola, José Manuel García Carrasco, John E. Beasley, Francisco J. Planes
2014 J jnl
Direct calculation of elementary flux modes satisfying several biological constraints in genome-scale metabolic networks.
Bioinform.
Jon Pey, Francisco J. Planes
2014 J jnl
Refining carbon flux paths using atomic trace data.
Bioinform.
Jon Pey, Francisco J. Planes, John E. Beasley
2013 J jnl
A network-based approach for predicting key enzymes explaining metabolite abundance alterations in a disease phenotype.
BMC Syst. Biol.
Jon Pey, Luis Tobalina, Joaquín Prada J. de Cisneros, Francisco J. Planes
2013 J jnl
Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways.
BMC Syst. Biol.
Jon Pey, Kaspar Valgepea, Angel Rubio, John E. Beasley, Francisco J. Planes
2013 J jnl
Joint analysis of miRNA and mRNA expression data.
Briefings Bioinform.
Ander Muniategui, Jon Pey, Francisco J. Planes, Angel Rubio
2013 J jnl
Selection of human tissue-specific elementary flux modes using gene expression data.
Bioinform.
Alberto Rezola, Jon Pey, Luis F. de Figueiredo, Adam Podhorski, Stefan Schuster, Angel Rubio, Francisco J. Planes
2011 J jnl
Do elementary flux modes combine linearly at the "atomic" level? Integrating tracer-based metabolomics data and elementary flux modes.
Biosyst.
Jon Pey, Constantinos Theodoropoulos, Alberto Rezola, Angel Rubio, Marta Cascante, Francisco J. Planes
2011 J jnl
Exploring metabolic pathways in genome-scale networks via generating flux modes.
Bioinform.
Alberto Rezola, Luis F. de Figueiredo, Matthias Brock, Jon Pey, Adam Podhorski, Christoph Wittmann, Stefan Schuster, Alexander Bockmayr, Francisco J. Planes