John Sidney

15 papers Journal 12Unranked 3
YearRankTypeTitle / Venue / Authors
2016 J jnl
An ontology for major histocompatibility restriction.
J. Biomed. Semant.
Randi Vita, James A. Overton, Emily Seymour, John Sidney, Jim Kaufman, Rebecca L. Tallmadge, Shirley Ellis, John Hammond, Geoff W. Butcher, Alessandro Sette, Bjoern Peters
2015 J jnl
Automated benchmarking of peptide-MHC class I binding predictions.
Bioinform.
Thomas Trolle, Imir G. Metushi, Jason A. Greenbaum, Yohan Kim, John Sidney, Ole Lund, Alessandro Sette, Bjoern Peters, Morten Nielsen
2014 J jnl
Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions.
BMC Bioinform.
Yohan Kim, John Sidney, Søren Buus, Alessandro Sette, Morten Nielsen, Bjoern Peters
2014 — conf
Development and validation of a broad scheme for prediction of HLA class II restricted T cell epitopes.
BCB
Sinu Paul, John Sidney, Bjoern Peters, Alessandro Sette
2010 — conf
An automatic computational pipeline to display MHC binding motifs.
BCB
Peng Wang, Björn Peters, John Sidney, Alessandro Sette
2010 J jnl
Peptide binding predictions for HLA DR, DP and DQ molecules.
BMC Bioinform.
Peng Wang, John Sidney, Yohan Kim, Alessandro Sette, Ole Lund, Morten Nielsen, Björn Peters
2009 J jnl
Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior.
BMC Bioinform.
Yohan Kim, John Sidney, Clemencia Pinilla, Alessandro Sette, Björn Peters
2008 J jnl
A Systematic Assessment of MHC Class II Peptide Binding Predictions and Evaluation of a Consensus Approach.
PLoS Comput. Biol.
Peng Wang, John Sidney, Courtney Dow, Bianca Mothé, Alessandro Sette, Björn Peters
2007 J jnl
Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines.
BMC Bioinform.
Huynh-Hoa Bui, John Sidney, Wei Li, Nicholas Fusseder, Alessandro Sette
2006 J jnl
A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules.
PLoS Comput. Biol.
Bjoern Peters, Huynh-Hoa Bui, Sune Frankild, Morten Nielsen, Claus Lundegaard, Emrah Kostem, Derek Basch, Kasper Lamberth, Mikkel Harndahl, Ward Fleri, Stephen S. Wilson, John Sidney, Ole Lund, Søren Buus, Alessandro Sette
2006 J jnl
Curation of complex, context-dependent immunological data.
BMC Bioinform.
Randi Vita, Kerrie Vaughan, Laura Zarebski, Nima Salimi, Ward Fleri, Howard Grey, Muthu Sathiamurthy, John Mokili, Huynh-Hoa Bui, Philip E. Bourne, Julia V. Ponomarenko, Romulo de Castro Jr., Russell K. Chan, John Sidney, Stephen S. Wilson, Scott Stewart, Scott Way, Björn Peters, Alessandro Sette
2006 J jnl
Improving MHC binding peptide prediction by incorporating binding data of auxiliary MHC molecules.
Bioinform.
Shanfeng Zhu, Keiko Udaka, John Sidney, Alessandro Sette, Kiyoko F. Aoki-Kinoshita, Hiroshi Mamitsuka
2006 J jnl
Predicting population coverage of T-cell epitope-based diagnostics and vaccines.
BMC Bioinform.
Huynh-Hoa Bui, John Sidney, Kenny Dinh, Scott Southwood, Mark J. Newman, Alessandro Sette
2006 — conf
The Immune Epitope Database and Analysis Resource.
PRIB
Alessandro Sette, Huynh-Hoa Bui, John Sidney, Philip E. Bourne, Søren Buus, Ward Fleri, R. Kubo, Ole Lund, D. Nemazee, Julia V. Ponomarenko, Muthu Sathiamurthy, Scott Stewart, Scott Way, Stephen S. Wilson, Björn Peters
2003 J jnl
Examining the independent binding assumption for binding of peptide epitopes to MHC-I molecules.
Bioinform.
Björn Peters, Weiwei Tong, John Sidney, Alessandro Sette, Zhiping Weng