John Reinitz

30 papers A 2B 1Misc 1Journal 19Unranked 7
YearRankTypeTitle / Venue / Authors
2020 J jnl
Fully interpretable deep learning model of transcriptional control.
Bioinform.
Yi Liu, Kenneth Barr, John Reinitz
2019 J jnl
An in silico analysis of robust but fragile gene regulation links enhancer length to robustness.
PLoS Comput. Biol.
Kenneth Barr, John Reinitz, Ovidiu Radulescu
2016 — conf
Hybrid Reductions of Computational Models of Ion Channels Coupled to Cellular Biochemistry.
CMSB
Jasha Sommer-Simpson, John Reinitz, Leonid Fridlyand, Louis Philipson, Ovidiu Radulescu
2016 J jnl
Parallel simulated annealing using an adaptive resampling interval.
Parallel Comput.
Zhihao Lou, John Reinitz
2014 J jnl
Punctuated evolution and robustness in morphogenesis.
Biosyst.
Dima Grigoriev, John Reinitz, Sergei Vakulenko, Andreas Weber
2012 J jnl
Modeling of Gap Gene Expression in
PLoS Comput. Biol.
Konstantin Kozlov, Svetlana Surkova, Ekaterina M. Myasnikova, John Reinitz, Maria Samsonova
2011 J jnl
Mechanisms of gap gene expression canalization in the Drosophila blastoderm.
BMC Syst. Biol.
Vitaly V. Gursky, Lena Panok, Ekaterina M. Myasnikova, Manu, Maria Samsonova, John Reinitz, Alexander M. Samsonov
2009 J jnl
Canalization of Gene Expression and Domain Shifts in the
PLoS Comput. Biol.
Manu, Svetlana Surkova, Alexander V. Spirov, Vitaly V. Gursky, Hilde Janssens, Ah-Ram Kim, Ovidiu Radulescu, Carlos E. Vanario-Alonso, David H. Sharp, Maria Samsonova, John Reinitz
2009 Misc conf
Estimation of Errors in Gene Expression Data Introduced by Diffractive Blurring of Confocal Images.
IMVIP
Ekaterina M. Myasnikova, Svetlana Surkova, Maria Samsonova, John Reinitz
2009 J jnl
Estimation of errors introduced by confocal imaging into the data on segmentation gene expression in
Bioinform.
Ekaterina M. Myasnikova, Svetlana Surkova, Lena Panok, Maria Samsonova, John Reinitz
2009 J jnl
FlyEx, the quantitative atlas on segmentation gene expression at cellular resolution.
Nucleic Acids Res.
Andrei Pisarev, Ekaterina Poustelnikova, Maria Samsonova, John Reinitz
2007 J jnl
Master equation simulation analysis of immunostained Bicoid morphogen gradient.
BMC Syst. Biol.
Yu Feng Wu, Ekaterina M. Myasnikova, John Reinitz
2006 J jnl
Reverse Engineering the Gap Gene Network of
PLoS Comput. Biol.
Theodore J. Perkins, Johannes Jaeger, John Reinitz, Leon Glass
2005 J jnl
ImageServer, a Tool for On-line Processing and Analysis of Biological Images.
J. Integr. Bioinform.
Andrei Pisarev, Ekaterina Poustelnikova, Konstantin Kozlov, Ekaterina M. Myasnikova, Maria Samsonova, John Reinitz
2004 J jnl
A database for management of gene expression data in situ.
Bioinform.
Ekaterina Poustelnikova, Andrei Pisarev, Maxim Blagov, Maria Samsonova, John Reinitz
2002 J jnl
A method for two-dimensional registration and construction of the two-dimensional atlas of gene expression patterns in situ.
Silico Biol.
Konstantin Kozlov, Ekaterina M. Myasnikova, Andrei Pisarev, Maria Samsonova, John Reinitz
2002 J jnl
Information and simulation systems for the analysis of gene regulation and metabolic pathways (Preface).
Silico Biol.
Ralf Hofestädt, Nikolay A. Kolchanov, John Reinitz
2002 J jnl
Reconstruction of the Dynamics of Drosophila Genes Expression from Sets of Images Sharing a Common Pattern.
Real Time Imaging
Alexander V. Spirov, Alexander B. Kazansky, Dmitry L. Timakin, John Reinitz
2002 A conf
Support vector regression applied to the determination of the developmental age of a Drosophila embryo from its segmentation gene expression patterns.
ISMB
Ekaterina M. Myasnikova, Anastassia Samsonova, Maria Samsonova, John Reinitz
2001 — conf
Application of the Neural Networks Based on Multi-valued Neurons to Classification of the Images of Gene Expression Patterns.
Fuzzy Days
Igor N. Aizenberg, Ekaterina M. Myasnikova, Maria Samsonova, John Reinitz
2001 — conf
Looking at functional genomics from inside the Drosophila blastoderm.
German Conference on Bioinformatics
John Reinitz
2001 J jnl
Registration of the expression patterns of Drosophila segmentation genes by two independent methods.
Bioinform.
Ekaterina M. Myasnikova, Anastassia Samsonova, Konstantin Kozlov, Maria Samsonova, John Reinitz
2001 — conf
Using of Evolutionary Computations in Image Processing for Quantitative Atlas of Drosophila Genes Expression.
EvoWorkshops
Alexander V. Spirov, Dmitry L. Timakin, John Reinitz, David Kosman
2000 — conf
Design of the Integrated Atlas of Segmentation Gene Expression in Situ.
German Conference on Bioinformatics
Maria Samsonova, Ekaterina Poustelnikova, Andrei Pisarev, John Reinitz
2000 — conf
Experimental Determination of Drosophila Embryonic Coordinates by Genetic Algorithms, the Simplex method, and Their Hybrid.
EvoWorkshops
Alexander V. Spirov, Dmitry L. Timakin, John Reinitz, David Kosman
2000 B conf
Fast Redundant Dyadic Wavelet Transform in Application to Spatial Registration of the Expression Patterns of Drosophila Segmentation Genes.
ICPR
Konstantin Kozlov, Ekaterina M. Myasnikova, Maria Samsonova, John Reinitz, David Kosman
2000 J jnl
HOX Pro: a specialized database for clusters and networks of homeobox genes.
Nucleic Acids Res.
Alexander V. Spirov, Timothy Bowler, John Reinitz
1999 A conf
Spatio-Temporal Registration of the Expression Patterns of Drosophila Segmentation Genes.
ISMB
Ekaterina M. Myasnikova, David Kosman, John Reinitz, Maria Samsonova
1995 — conf
Modeling the Connection Between Development and Evolution: Preliminary Report.
Evolution and Biocomputation
Eric Mjolsness, Charles Garrett, John Reinitz, David H. Sharp
1994 J jnl
Computer-assisted restriction mapping: an integrated approach to handling experimental uncertainty.
Comput. Appl. Biosci.
L. W. Wright, J. B. Lichter, John Reinitz, Mark A. Shifman, Kenneth K. Kidd, Perry L. Miller