John H. Phan

42 papers C 2Misc 1Journal 11Unranked 28
YearRankTypeTitle / Venue / Authors
2016 J jnl
A Multi-Modal Graph-Based Semi-Supervised Pipeline for Predicting Cancer Survival.
CoRR
Hamid Reza Hassanzadeh, John H. Phan, May D. Wang
2016 — conf
A multi-modal graph-based semi-supervised pipeline for predicting cancer survival.
BIBM
Hamid Reza Hassanzadeh, John H. Phan, May D. Wang
2016 — conf
Integration of multi-modal biomedical data to predict cancer grade and patient survival.
BHI
John H. Phan, Ryan Hoffman, Sonal Kothari, Po-Yen Wu, May D. Wang
2015 J jnl
A Semi-Supervised Method for Predicting Cancer Survival Using Incomplete Clinical Data.
CoRR
Hamid Reza Hassanzadeh, John H. Phan, May D. Wang
2015 — conf
A semi-supervised method for predicting cancer survival using incomplete clinical data.
EMBC
Hamid Reza Hassanzadeh, John H. Phan, May D. Wang
2015 — conf
Detection of blur artifacts in histopathological whole-slide images of endomyocardial biopsies.
EMBC
Hang Wu, John H. Phan, Ajay K. Bhatia, Caitlin A. Cundiff, Bahig M. Shehata, May D. Wang
2015 — conf
Effect of low-expression gene filtering on detection of differentially expressed genes in RNA-seq data.
EMBC
Ying Sha, John H. Phan, May D. Wang
2015 — conf
Integration of multimodal RNA-seq data for prediction of kidney cancer survival.
BIBM
Matt Schwartz, Martin Park, John H. Phan, May D. Wang
2015 — conf
The impact of RNA-seq aligners on gene expression estimation.
BCB
Cheng Yang, Po-Yen Wu, Li Tong, John H. Phan, May D. Wang
2014 — conf
Investigation of factors affecting RNA-seq gene expression calls.
EMBC
Sahar Harati, John H. Phan, May D. Wang
2014 J jnl
Removing Batch Effects From Histopathological Images for Enhanced Cancer Diagnosis.
IEEE J. Biomed. Health Informatics
Sonal Kothari, John H. Phan, Todd H. Stokes, Adeboye O. Osunkoya, Andrew N. Young, May D. Wang
2014 — conf
The impact of RNA-seq alignment pipeline on detection of differentially expressed genes.
GlobalSIP
Cheng Yang, Po-Yen Wu, John H. Phan, May D. Wang
2014 — conf
omniClassifier: a desktop grid computing system for big data prediction modeling.
BCB
John H. Phan, Sonal Kothari, May D. Wang
2013 — conf
An approach for assessing RNA-seq quantification algorithms in replication studies.
GENSiPS
Po-Yen Wu, John H. Phan, May D. Wang
2013 J jnl
Assessing the impact of human genome annotation choice on RNA-seq expression estimates.
BMC Bioinform.
Po-Yen Wu, John H. Phan, May D. Wang
2013 — conf
Benchmarking RNA-Seq quantification tools.
EMBC
Raghu Chandramohan, Po-Yen Wu, John H. Phan, May D. Wang
2013 — conf
Exploration of genomic, proteomic, and histopathological image data integration methods for clinical prediction.
ChinaSIP
Anjaly Poruthoor, John H. Phan, Sonal Kothari, May D. Wang
2013 J jnl
Histological image classification using biologically interpretable shape-based features.
BMC Medical Imaging
Sonal Kothari, John H. Phan, Andrew N. Young, May D. Wang
2013 J jnl
Review: Pathology imaging informatics for quantitative analysis of whole-slide images.
J. Am. Medical Informatics Assoc.
Sonal Kothari, John H. Phan, Todd H. Stokes, May D. Wang
2013 — conf
Systematic Assessment of RNA-Seq Quantification Tools Using Simulated Sequence Data.
BCB
Raghu Chandramohan, Po-Yen Wu, John H. Phan, May D. Wang
2013 J jnl
omniBiomarker: A Web-Based Application for Knowledge-Driven Biomarker Identification.
IEEE Trans. Biomed. Eng.
John H. Phan, Andrew N. Young, May Dongmei Wang
2012 — conf
Biological interpretation of morphological patterns in histopathological whole-slide images.
BCB
Sonal Kothari, Adeboye O. Osunkoya, John H. Phan, May D. Wang
2012 J jnl
Cardiovascular Genomics: A Biomarker Identification Pipeline.
IEEE Trans. Inf. Technol. Biomed.
John H. Phan, Chang F. Quo, May Dongmei Wang
2012 — conf
Improving the flexibility of RNA-Seq data analysis pipelines.
GENSiPS
John H. Phan, Po-Yen Wu, May D. Wang
2012 J jnl
Reverse engineering biomolecular systems using -omic data: challenges, progress and opportunities.
Briefings Bioinform.
Chang F. Quo, Chanchala Kaddi, John H. Phan, Amin Zollanvari, Mingqing Xu, May D. Wang, Gil Alterovitz
2012 — conf
Scale normalization of histopathological images for batch invariant cancer diagnostic models.
EMBC
Sonal Kothari, John H. Phan, May D. Wang
2012 — conf
The effect of human genome annotation complexity on RNA-Seq gene expression quantification.
BIBM Workshops
Po-Yen Wu, John H. Phan, May D. Wang
2012 J jnl
Win percentage: a novel measure for assessing the suitability of machine classifiers for biological problems.
BMC Bioinform.
R. Mitchell Parry, John H. Phan, May D. Wang
2011 — conf
Automatic batch-invariant color segmentation of histological cancer images.
ISBI
Sonal Kothari, John H. Phan, Richard A. Moffitt, Todd H. Stokes, Shelby E. Hassberger, Qaiser Chaudry, Andrew N. Young, May D. Wang
2011 — conf
Evaluation of normalization methods for RNA-Seq gene expression estimation.
BIBM Workshops
Po-Yen Wu, John H. Phan, Fengfeng Zhou, May D. Wang
2011 — conf
Exploring the feasibility of next-generation sequencing and microarray data meta-analysis.
EMBC
Po-Yen Wu, John H. Phan, May D. Wang
2011 — conf
Histological Image Feature Mining Reveals Emergent Diagnostic Properties for Renal Cancer.
BIBM
Sonal Kothari, John H. Phan, Andrew N. Young, May D. Wang
2011 — conf
Win percentage: a novel measure for assessing the suitability of machine classifiers for biological problems.
BCB
R. Mitchell Parry, John H. Phan, May D. Wang
2011 J jnl
caCORRECT2: Improving the accuracy and reliability of microarray data in the presence of artifacts.
BMC Bioinform.
Richard A. Moffitt, Qiqin Yin-Goen, Todd H. Stokes, R. Mitchell Parry, James H. Torrance, John H. Phan, Andrew N. Young, May D. Wang
2010 — conf
A distributed system for fast alignment of next-generation sequencing data.
BIBM Workshops
Jaydeep K. Srimani, Po-Yen Wu, John H. Phan, May D. Wang
2009 Misc conf
Improving the Efficiency of Biomarker Identification Using Biological Knowledge.
Pacific Symposium on Biocomputing
John H. Phan, Qiqin Yin-Goen, Andrew N. Young, May D. Wang
2008 — conf
Improving Microarray Sample Size Using Bootstrap Data Combination.
IMSCCS
John H. Phan, Richard A. Moffitt, Andrea B. Barrett, May D. Wang
2007 C conf
Estimating Classification Error to Identify Biomarkers in Time Series Expression Data.
BIBE
John H. Phan, May D. Wang
2007 C conf
Evolving Biological Behavior in Gene-Based Cellular Simulations.
BIBE
John H. Phan, Richard A. Moffitt, Todd H. Stokes, May D. Wang
2006 — conf
Bio-Nano-Informatics: An Integrated Information Management System for Personalized Oncology.
EMBC
Todd H. Stokes, John H. Phan, Chang F. Quo, Shuming Nie, May D. Wang
2006 — conf
Selecting Clinically-Driven Biomarkers for Cancer Nanotechnology.
EMBC
John H. Phan, Andrew N. Young, May D. Wang
2004 — conf
Development of a Knowledge-Based Multi-Scheme Cancer Microarray Data Analysis System.
CSB
John H. Phan, Chang F. Quo, Kejiao Guo, Weimin Feng, Geoffrey Wang, May D. Wang