John D. Osborne

14 papers Misc 3Journal 9Unranked 2
YearRankTypeTitle / Venue / Authors
2024 J jnl
Disease Entity Recognition and Normalization is Improved with Large Language Model Derived Synthetic Normalized Mentions.
CoRR
Kuleen Sasse, Shinjitha Vadlakonda, Richard E. Kennedy, John D. Osborne
2024 J jnl
Environment Scan of Generative AI Infrastructure for Clinical and Translational Science.
CoRR
Betina Idnay, Zihan Xu, William G. Adams, Mohammad Adibuzzaman, Nicholas R. Anderson, Neil Bahroos, Douglas S. Bell, Cody Bumgardner, Thomas R. Campion Jr., Victor M. Castro, James J. Cimino, I. Glenn Cohen, David A. Dorr, Peter L. Elkin, Jungwei W. Fan, Todd Ferris, David J. Foran, David A. Hanauer, Mike Hogarth, Kun Huang, Jayashree Kalpathy-Cramer, Manoj Kandpal, Niranjan S. Karnik, Avnish Katoch, Albert M. Lai, Christophe G. Lambert, Lang Li, Christopher J. Lindsell, Jinze Liu, Zhiyong Lu, Yuan Luo, Peter McGarvey, Eneida A. Mendonça, Parsa Mirhaji, Shawn N. Murphy, John D. Osborne, Ioannis Ch. Paschalidis, Paul A. Harris, Fred W. Prior, Nicholas J. Shaheen, Nawar Shara, Ida Sim, Umberto Tachinardi, Lemuel R. Waitman, Rosalind J. Wright, Adrian H. Zai, Kai Zheng, Sandra Soo-Jin Lee, Bradley A. Malin, Karthik Natarajan, W. Nicholson Price, Rui Zhang, Yiye Zhang, Hua Xu, Jiang Bian, Chunhua Weng, Yifan Peng
2024 J jnl
Mapping Bias in Vision Language Models: Signposts, Pitfalls, and the Road Ahead.
CoRR
Kuleen Sasse, Shan Chen, Jackson Pond, Danielle S. Bitterman, John D. Osborne
2024 J jnl
Multi-task transfer learning for the prediction of entity modifiers in clinical text: application to opioid use disorder case detection.
J. Biomed. Semant.
Abdullateef I. Almudaifer, Whitney L. Covington, JaMor Hairston, Zachary Deitch, Ankit Anand, Caleb M. Carroll, Estera Crisan, William Bradford, Lauren Walter, Ellen F. Eaton, Sue S. Feldman, John D. Osborne
2024 J jnl
Transfer Learning for the Prediction of Entity Modifiers in Clinical Text: Application to Opioid Use Disorder Case Detection.
CoRR
Abdullateef I. Almudaifer, Tobias O'Leary, Whitney L. Covington, JaMor Hairston, Zachary Deitch, Ankit Anand, Caleb M. Carroll, Estera Crisan, William Bradford, Lauren Walter, Ellen F. Eaton, Sue S. Feldman, John D. Osborne
2023 J jnl
An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C).
J. Am. Medical Informatics Assoc.
Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Dalton Schutte, Rui Zhang, Masoud Rouhizadeh, John D. Osborne, Yongqun He, Umit Topaloglu, Stephanie S. Hong, Joel H. Saltz, Thomas Schaffter, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu
2023 — conf
Annotation of Opioid Use Disorder Entity Modifiers in Clinical Text.
MedInfo
Abdullateef I. Almudaifer, Sue S. Feldman, Tobias O'Leary, Whitney L. Covington, JaMor Hairston, Zachary Deitch, Estera Crisan, Kevin Riggs, Lauren Walter, John D. Osborne
2022 J jnl
BRATsynthetic: Text De-identification using a Markov Chain Replacement Strategy for Surrogate Personal Identifying Information.
CoRR
John D. Osborne, Tobias O'Leary, Akhil Nadimpalli, Salma M. Aly, Richard E. Kennedy
2022 J jnl
The precision medicine process for treating rare disease using the artificial intelligence tool mediKanren.
Frontiers Artif. Intell.
Aleksandra Foksinska, Camerron M. Crowder, Andrew B. Crouse, Jeff Henrikson, William E. Byrd, Gregory Rosenblatt, Michael J. Patton, Kaiwen He, Thi K. Tran-Nguyen, Marissa Zheng, Stephen A. Ramsey, Nada Amin, John D. Osborne, Matthew Might
2021 J jnl
An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C).
CoRR
Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Rui Zhang, John D. Osborne, Masoud Rouhizadeh, Yongqun He, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu
2021 Misc conf
Towards Identification of Opiate Use Disorder in Clinical Text.
AMIA
John D. Osborne, Tobias O'Leary, Abdullateef I. Almudaifer, Whitney L. Covington, Caleb M. Carroll, Ellen F. Eaton, Rachel A. Lee, Sue S. Feldman, Lauren Walter
2020 Misc conf
AllergyMap: An Open Source Corpus of Allergy Mention Normalizations.
AMIA
Amy Y. Wang, John D. Osborne, Maria I. Danila, Andrew Naidech, David M. Liebovitz
2020 — conf
Identification of Cancer Entities in Clinical Text Combining Transformers with Dictionary Features.
IberLEF@SEPLN
John D. Osborne, Tobias O'Leary, James Del Monte, Kuleen Sasse
2020 Misc conf
Identification of Gout Flares in Chief Complaint Text Using Natural Language Processing.
AMIA
John D. Osborne, James S. Booth, Tobias O'Leary, Amy Mudano, Giovanna Rosas, Phillip Foster, Kenneth Saag, Maria I. Danila