John D. Holliday

35 papers Journal 33Unranked 1

Year	Rank	Type	Title / Venue / Authors
2015	J	`jnl`	Calculation of Substructural Analysis Weights Using a Genetic Algorithm. J. Chem. Inf. Model. John D. Holliday, Nor Sani, Peter Willett
2015	J	`jnl`	Maximum Common Substructure-Based Data Fusion in Similarity Searching. J. Chem. Inf. Model. Edmund Duesbury, John D. Holliday, Peter Willett
2014	J	`jnl`	The use of 2D fingerprint methods to support the assessment of structural similarity in orphan drug legislation. J. Cheminformatics Pedro Franco, Nuria Porta, John D. Holliday, Peter Willett
2013	J	`jnl`	Comparison of chemical similarity measures using different numbers of query structures. J. Inf. Sci. Shereena M. Arif, John D. Holliday, Peter Willett
2012	J	`jnl`	Interactions Between Weighting Scheme and Similarity Coefficient in Similarity-Based Virtual Screening. Int. J. Chemoinformatics Chem. Eng. John D. Holliday, Peter Willett, Hua Xiang
2012	J	`jnl`	Similarity Coefficients for Binary Chemoinformatics Data: Overview and Extended Comparison Using Simulated and Real Data Sets. J. Chem. Inf. Model. Roberto Todeschini, Viviana Consonni, Hua Xiang, John D. Holliday, Paolo Massimo Buscema, Peter Willett
2011	J	`jnl`	Multiple search methods for similarity-based virtual screening: analysis of search overlap and precision. J. Cheminformatics John D. Holliday, Evangelos Kanoulas, Nurul Malim, Peter Willett
2011	—	`ch.`	Representation and Searching of Chemical-Structure Information in Patents. Current Challenges in Patent Information Retrieval John D. Holliday, Peter Willett
2010	J	`jnl`	Inverse Frequency Weighting of Fragments for Similarity-Based Virtual Screening. J. Chem. Inf. Model. Shereena M. Arif, John D. Holliday, Peter Willett
2009	J	`jnl`	A Machine Learning Approach to Weighting Schemes in the Data Fusion of Similarity Coefficients. J. Chem. Inf. Model. Jenny Chen, John D. Holliday, John Bradshaw
2009	J	`jnl`	Analysis and use of fragment-occurrence data in similarity-based virtual screening. J. Comput. Aided Mol. Des. Shereena M. Arif, John D. Holliday, Peter Willett
2009	J	`jnl`	Comparison of Nonbinary Similarity Coefficients for Similarity Searching, Clustering and Compound Selection. J. Chem. Inf. Model. Aysha Al Khalifa, Maciej Haranczyk, John D. Holliday
2009	J	`jnl`	Effect of Data Standardization on Chemical Clustering and Similarity Searching. J. Chem. Inf. Model. Chia-Wei Chu, John D. Holliday, Peter Willett
2009	—	`conf`	Enhancing the Effectiveness of Fingerprint-Based Virtual Screening: Use of Turbo Similarity Searching and of Fragment Frequencies of Occurrence. PRIB Shereena M. Arif, Jérôme Hert, John D. Holliday, Nurul Malim, Peter Willett
2009	J	`jnl`	Turbo similarity searching: Effect of fingerprint and dataset on virtual-screening performance. Stat. Anal. Data Min. Eleanor J. Gardiner, Valerie J. Gillet, Maciej Haranczyk, Jérôme Hert, John D. Holliday, Nurul Malim, Yogendra Patel, Peter Willett
2008	J	`jnl`	Comparison of Similarity Coefficients for Clustering and Compound Selection. J. Chem. Inf. Model. Maciej Haranczyk, John D. Holliday
2008	J	`jnl`	Structure and singly occupied molecular orbital analysis of anionic tautomers of guanine. J. Comput. Chem. Maciej Haranczyk, John D. Holliday, Peter Willett, Maciej Gutowski
2004	J	`jnl`	Clustering Files of Chemical Structures Using the Fuzzy J. Chem. Inf. Model. John D. Holliday, Sarah L. Rodgers, Peter Willett, Min-You Chen, Mahdi Mahfouf, Kevin Lawson, Graham Mullier
2003	J	`jnl`	Analysis and Display of the Size Dependence of Chemical Similarity Coefficients. J. Chem. Inf. Comput. Sci. John D. Holliday, Naomie Salim, Martin Whittle, Peter Willett
2003	J	`jnl`	Calculation of Intersubstituent Similarity Using R-Group Descriptors. J. Chem. Inf. Comput. Sci. John D. Holliday, Stephen P. Jelfs, Peter Willett, Peter Gedeck
2003	J	`jnl`	Chemoinformatics Research at the University of Sheffield: A History and Citation Analysis. J. Inf. Sci. Neal Bishop, Valerie J. Gillet, John D. Holliday, Peter Willett
2003	J	`jnl`	Combination of Fingerprint-Based Similarity Coefficients Using Data Fusion. J. Chem. Inf. Comput. Sci. Naomie Salim, John D. Holliday, Peter Willett
1996	J	`jnl`	The Sheffield Generic Structures Project-a Retrospective Review. J. Chem. Inf. Comput. Sci. Michael F. Lynch, John D. Holliday
1995	J	`jnl`	Computer Storage and Retrieval of Generic Chemical Structures in Patents, 16. The Refined Search: An Algorithm for Matching Components of Generic Chemical Structures at the Atom-Bond Level. J. Chem. Inf. Comput. Sci. John D. Holliday, Michael F. Lynch
1995	J	`jnl`	Computer Storage and Retrieval of Generic Chemical Structures in Patents, 17. Evaluation of the Refined Search. J. Chem. Inf. Comput. Sci. John D. Holliday, Michael F. Lynch
1994	J	`jnl`	Evaluation of the screening stages of the Sheffield Research Project on Computer Storage and Retrieval of Generic Chemical Structures in Patents. J. Chem. Inf. Comput. Sci. John D. Holliday, Geoffrey M. Downs, Valerie J. Gillet, Michael F. Lynch, Winfried Dethlefsen
1993	J	`jnl`	Computer storage and retrieval of generic chemical structures in patents. 15. Generation of topological fragment descriptors from nontopological representations of generic structure components. J. Chem. Inf. Comput. Sci. John D. Holliday, Geoffrey M. Downs, Valerie J. Gillet, Michael F. Lynch
1992	J	`jnl`	Computer storage and retrieval of generic chemical structures in patents. 14. Fragment generation from generic structures. J. Chem. Inf. Comput. Sci. John D. Holliday, Geoffrey M. Downs, Valerie J. Gillet, Michael F. Lynch
1991	J	`jnl`	Computer storage and retrieval of generic chemical structures in patents. 11. Theoretical aspects of the use of structure languages in a retrieval system. J. Chem. Inf. Comput. Sci. Winfried Dethlefsen, Michael F. Lynch, Valerie J. Gillet, Geoffrey M. Downs, John D. Holliday, John M. Barnard
1991	J	`jnl`	Computer storage and retrieval of generic chemical structures in patents. 12. Principles of search operations involving parameter lists: matching-relations, user-defined match levels, and transition from the reduced graph search to the refined search. J. Chem. Inf. Comput. Sci. Winfried Dethlefsen, Michael F. Lynch, Valerie J. Gillet, Geoffrey M. Downs, John D. Holliday, John M. Barnard
1991	J	`jnl`	Computer storage and retrieval of generic chemical structures in patents. 13. Reduced graph generation. J. Chem. Inf. Comput. Sci. Valerie J. Gillet, Geoffrey M. Downs, John D. Holliday, Michael F. Lynch, Winfried Dethlefsen
1989	J	`jnl`	Computer storage and retrieval of generic chemical structures in patents. 10. Assignment and logical bubble-up of ring screens for structurally explicit generics. J. Chem. Inf. Comput. Sci. Geoffrey M. Downs, Valerie J. Gillet, John D. Holliday, Michael F. Lynch
1989	J	`jnl`	Computer storage and retrieval of generic chemical structures in patents. 9. An algorithm to find the extended set of smallest rings in structurally explicit generics. J. Chem. Inf. Comput. Sci. Geoffrey M. Downs, Valerie J. Gillet, John D. Holliday, Michael F. Lynch
1989	J	`jnl`	Review of ring perception algorithms for chemical graphs. J. Chem. Inf. Comput. Sci. Geoffrey M. Downs, Valerie J. Gillet, John D. Holliday, Michael F. Lynch
1989	J	`jnl`	Theoretical aspects of ring perception and development of the extended set of smallest rings concept. J. Chem. Inf. Comput. Sci. Geoffrey M. Downs, Valerie J. Gillet, John D. Holliday, Michael F. Lynch