John Boyle

21 papers C 1Journal 14Unranked 6
YearRankTypeTitle / Venue / Authors
2018 J jnl
Chemlistem: chemical named entity recognition using recurrent neural networks.
J. Cheminformatics
Peter Corbett, John Boyle
2018 J jnl
Improving the learning of chemical-protein interactions from literature using transfer learning and specialized word embeddings.
Database J. Biol. Databases Curation
Peter Corbett, John Boyle
2017 — conf
Secure Data Processing in the Cloud.
ESOCC Workshops
Zoltán Ádám Mann, Eliot E. Salant, Mike Surridge, Dhouha Ayed, John Boyle, Maritta Heisel, Andreas Metzger, Paul Mundt
2012 J jnl
Fastbreak: a tool for analysis and visualization of structural variations in genomic data.
EURASIP J. Bioinform. Syst. Biol.
Ryan Bressler, Jake Lin, Andrea Eakin, Thomas Robinson, Richard Kreisberg, Hector Rovira, Theo A. Knijnenburg, John Boyle, Ilya Shmulevich
2012 J jnl
Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework.
BMC Bioinform.
Steven Lewis, Attila Csordas, Sarah A. Killcoyne, Henning Hermjakob, Michael R. Hoopmann, Robert L. Moritz, Eric W. Deutsch, John Boyle
2012 J jnl
Interfaces to PeptideAtlas: a case study of standard data access systems.
Briefings Bioinform.
Sarah A. Killcoyne, Jeremy Handcock, Thomas Robinson, Eric W. Deutsch, John Boyle
2012 J jnl
Methods for visual mining of genomic and proteomic data atlases.
BMC Bioinform.
John Boyle, Richard Kreisberg, Ryan Bressler, Sarah A. Killcoyne
2011 J jnl
EPEPT: A web service for enhanced P-value estimation in permutation tests.
BMC Bioinform.
Theo A. Knijnenburg, Jake Lin, Hector Rovira, John Boyle, Ilya Shmulevich
2010 — conf
An Integration Architecture Designed to Deal with the Issues of Biological Scope, Scale and Complexity.
DILS
Hector Rovira, Sarah A. Killcoyne, Ilya Shmulevich, John Boyle
2010 C conf
Howdah - A Flexible Pipeline Framework for Analyzing Genomic Data.
CloudCom
Steven Lewis, Sheila Reynolds, Hector Rovira, Mike O'Leary, Sarah A. Killcoyne, Ilya Shmulevich, John Boyle
2010 J jnl
SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments.
BMC Bioinform.
David B. Burdick, Christopher C. Cavnor, Jeremy Handcock, Sarah A. Killcoyne, Jake Lin, Bruz Marzolf, Stephen A. Ramsey, Hector Rovira, Ryan Bressler, Ilya Shmulevich, John Boyle
2009 J jnl
Adaptable data management for systems biology investigations.
BMC Bioinform.
John Boyle, Hector Rovira, Christopher C. Cavnor, David B. Burdick, Sarah A. Killcoyne, Ilya Shmulevich
2009 J jnl
Managing Chaos: Lessons Learned Developing Software in the Life Sciences.
Comput. Sci. Eng.
Sarah A. Killcoyne, John Boyle
2008 J jnl
Systems biology driven software design for the research enterprise.
BMC Bioinform.
John Boyle, Christopher C. Cavnor, Sarah A. Killcoyne, Ilya Shmulevich
2005 J jnl
Gene-Expression Omnibus integration and clustering Tools in SeqExpress.
Bioinform.
John Boyle
2004 J jnl
SeqExpress: desktop analysis and visualization tool for gene expression experiments.
Bioinform.
John Boyle
1996 J jnl
From WIMPS to 3D: The Development of AMAZE.
J. Vis. Lang. Comput.
John Boyle, Scott Leishman, Peter M. D. Gray
1995 — conf
The Design of 3D metaphors for Database Visualisation.
VDB
John Boyle, Peter M. D. Gray
1994 — conf
Design of a 3D User Interface to a Database.
IDS
John Boyle, John E. Fothergill, Peter M. D. Gray
1993 — conf
Database Issues for Data Visualization: Interaction, User Interfaces, and Presentation.
Workshop on Database Issues for Data Visualization
John Boyle, Stephen G. Eick, Matthias L. Hemmje, Daniel A. Keim, John Peter Lee, Eric E. Sumner Jr.
1993 — conf
Design of a 3D User Interface to a Database.
Workshop on Database Issues for Data Visualization
John Boyle, John E. Fothergill, Peter M. D. Gray