Johan Trygg

25 papers B 2Journal 13Unranked 10
YearRankTypeTitle / Venue / Authors
2025 — conf
Box it and Track it: A Weakly Supervised Framework for Cell Tracking.
DAGM GCPR
Nabeel Khalid, Mohammadmahdi Koochali, Khola Naseem, Gillian Lovell, Bianca Migliori, Daniel A. Porto, Johan Trygg, Andreas Dengel, Sheraz Ahmed
2025 J jnl
OPLS-Based Multiclass Classification and Data-Driven Interclass Relationship Discovery.
J. Chem. Inf. Model.
Edvin Forsgren, Benny Björkblom, Johan Trygg, Pär Jonsson
2025 — conf
SAT: Segment and Track Anything for Microscopy.
ICAART (2)
Nabeel Khalid, Mohammadmahdi Koochali, Khola Naseem, Maria Caroprese, Gillian Lovell, Daniel A. Porto, Johan Trygg, Andreas Dengel, Sheraz Ahmed
2024 — conf
Bounding Box Is All You Need: Learning to Segment Cells in 2D Microscopic Images via Box Annotations.
MIUA (1)
Nabeel Khalid, Maria Caroprese, Gillian Lovell, Daniel A. Porto, Johan Trygg, Andreas Dengel, Sheraz Ahmed
2024 — conf
CellGenie: An End-to-End Pipeline for Synthetic Cellular Data Generation and Segmentation: A Use Case for Cell Segmentation in Microscopic Images.
MIUA (1)
Nabeel Khalid, Mohammadmahdi Koochali, Duway Nicolas Lesmes-Leon, Maria Caroprese, Gillian Lovell, Daniel A. Porto, Johan Trygg, Andreas Dengel, Sheraz Ahmed
2024 — conf
CellSpot: Deep Learning-Based Efficient Cell Center Detection in Microscopic Images.
ICANN (8)
Nabeel Khalid, Maria Caroprese, Gillian Lovell, Johan Trygg, Andreas Dengel, Sheraz Ahmed
2023 — conf
Deep Learning Architectures for the Prediction of YY1-Mediated Chromatin Loops.
ISBRA
Ahtisham Fazeel Abbasi, Muhammad Nabeel Asim, Johan Trygg, Andreas Dengel, Sheraz Ahmed
2023 — conf
PACE: Point Annotation-Based Cell Segmentation for Efficient Microscopic Image Analysis.
ICANN (2)
Nabeel Khalid, Tiago Comassetto Fróes, Maria Caroprese, Gillian Lovell, Johan Trygg, Andreas Dengel, Sheraz Ahmed
2022 — conf
DeepMuCS: A Framework for Co-culture Microscopic Image Analysis: From Generation to Segmentation.
BHI
Nabeel Khalid, Mohammadmahdi Koochali, Vikas Rajashekar, Mohsin Munir, Christoffer Edlund, Timothy R. Jackson, Johan Trygg, Rickard Sjögren, Andreas Dengel, Sheraz Ahmed
2022 — conf
Point2Mask: A Weakly Supervised Approach for Cell Segmentation Using Point Annotation.
MIUA
Nabeel Khalid, Fabian Schmeisser, Mohammadmahdi Koochali, Mohsin Munir, Christoffer Edlund, Timothy R. Jackson, Johan Trygg, Rickard Sjögren, Andreas Dengel, Sheraz Ahmed
2022 J jnl
Toward Delicate Anomaly Detection of Energy Consumption for Buildings: Enhance the Performance From Two Levels.
IEEE Access
Dong Wang, Therese Enlund, Johan Trygg, Mats Tysklind, Lili Jiang
2021 J jnl
A Robust and Precise ConvNet for Small Non-Coding RNA Classification (RPC-snRC).
IEEE Access
Muhammad Nabeel Asim, Muhammad Imran Malik, Christoph Zehe, Johan Trygg, Andreas Dengel, Sheraz Ahmed
2021 — conf
DeepCIS: An end-to-end Pipeline for Cell-type aware Instance Segmentation in Microscopic Images.
BHI
Nabeel Khalid, Mohsin Munir, Christoffer Edlund, Timothy R. Jackson, Johan Trygg, Rickard Sjögren, Andreas Dengel, Sheraz Ahmed
2021 B conf
DeepCeNS: An end-to-end Pipeline for Cell and Nucleus Segmentation in Microscopic Images.
IJCNN
Nabeel Khalid, Mohsin Munir, Christoffer Edlund, Timothy R. Jackson, Johan Trygg, Rickard Sjögren, Andreas Dengel, Sheraz Ahmed
2021 B conf
L2S-MirLoc: A Lightweight Two Stage MiRNA Sub-Cellular Localization Prediction Framework.
IJCNN
Muhammad Nabeel Asim, Muhammad Ali Ibrahim, Christoph Zehe, Olivier Cloarec, Rickard Sjögren, Johan Trygg, Andreas Dengel, Sheraz Ahmed
2021 J jnl
Multiblock variable influence on orthogonal projections (MB-VIOP) for enhanced interpretation of total, global, local and unique variations in OnPLS models.
BMC Bioinform.
Beatriz Galindo-Prieto, Paul Geladi, Johan Trygg
2021 J jnl
Out-of-Distribution Example Detection in Deep Neural Networks using Distance to Modelled Embedding.
CoRR
Rickard Sjögren, Johan Trygg
2019 J jnl
doepipeline: a systematic approach to optimizing multi-level and multi-step data processing workflows.
BMC Bioinform.
Daniel Svensson, Rickard Sjögren, David Sundell, Andreas Sjödin, Johan Trygg
2012 J jnl
Dynamic ultrasound imaging - A multivariate approach for the analysis and comparison of time-dependent musculoskeletal movements.
BMC Medical Imaging
Tommy Löfstedt, Olof Ahnlund, Michael Peolsson, Johan Trygg
2010 J jnl
Modelling human musculoskeletal functional movements using ultrasound imaging.
BMC Medical Imaging
Michael Peolsson, Tommy Löfstedt, Susanna Vogt, Hans Stenlund, Anton Arndt, Johan Trygg
2008 J jnl
K-OPLS package: Kernel-based orthogonal projections to latent structures for prediction and interpretation in feature space.
BMC Bioinform.
Max Bylesjö, Mattias Rantalainen, Jeremy K. Nicholson, Elaine Holmes, Johan Trygg
2008 J jnl
Piecewise multivariate modelling of sequential metabolic profiling data.
BMC Bioinform.
Mattias Rantalainen, Olivier Cloarec, Timothy M. D. Ebbels, Torbjörn Lundstedt, Jeremy K. Nicholson, Elaine Holmes, Johan Trygg
2007 J jnl
Orthogonal projections to latent structures as a strategy for microarray data normalization.
BMC Bioinform.
Max Bylesjö, Daniel Eriksson, Andreas Sjödin, Stefan Jansson, Thomas Moritz, Johan Trygg
2006 J jnl
MASQOT-GUI: spot quality assessment for the two-channel microarray platform.
Bioinform.
Max Bylesjö, Andreas Sjödin, Daniel Eriksson, Henrik Antti, Thomas Moritz, Stefan Jansson, Johan Trygg
2005 J jnl
MASQOT: a method for cDNA microarray spot quality control.
BMC Bioinform.
Max Bylesjö, Daniel Eriksson, Andreas Sjödin, Michael Sjöström, Stefan Jansson, Henrik Antti, Johan Trygg