Johan A. Westerhuis

18 papers Journal 18
YearRankTypeTitle / Venue / Authors
2025 J jnl
GcDUO: an open-source software for GC × GC-MS data analysis.
Briefings Bioinform.
Maria Llambrich, Frans M. van der Kloet, Lluc Sementé, Anaïs Rodrigues, Saer Samanipour, Pierre-Hugues Stefanuto, Johan A. Westerhuis, Raquel Cumeras, Jesús Brezmes
2023 J jnl
Analysis of high-dimensional metabolomics data with complex temporal dynamics using RM-ASCA+.
PLoS Comput. Biol.
Balázs Erdos, Johan A. Westerhuis, Michiel E. Adriaens, Shauna D. O'Donovan, Ren Xie, Cécile M. Singh-Povel, Age K. Smilde, Ilja C. W. Arts
2021 J jnl
Repeated measures ASCA+ for analysis of longitudinal intervention studies with multivariate outcome data.
PLoS Comput. Biol.
Torfinn S. Madssen, Guro F. Giskeødegård, Age K. Smilde, Johan A. Westerhuis
2020 J jnl
Increased comparability between RNA-Seq and microarray data by utilization of gene sets.
PLoS Comput. Biol.
Frans M. van der Kloet, Jeroen Buurmans, Martijs J. Jonker, Age K. Smilde, Johan A. Westerhuis
2019 J jnl
All Sparse PCA Models Are Wrong, But Some Are Useful. Part I: Computation of Scores, Residuals and Explained Variance.
CoRR
J. Camacho, Age K. Smilde, Edoardo Saccenti, Johan A. Westerhuis
2019 J jnl
Principal component analysis of binary genomics data.
Briefings Bioinform.
Yipeng Song, Johan A. Westerhuis, Nanne Aben, Magali Michaut, Lodewyk F. A. Wessels, Age K. Smilde
2019 J jnl
Variable selection and validation in multivariate modelling.
Bioinform.
Lin Shi, Johan A. Westerhuis, Johan Rosén, Rikard Landberg, Carl Brunius
2018 J jnl
Training for translation between disciplines: a philosophy for life and data sciences curricula.
Bioinform.
K. Anton Feenstra, Sanne Abeln, Johan A. Westerhuis, Filipe Brancos dos Santos, Douwe Molenaar, Bas Teusink, Huub C. J. Hoefsloot, Jaap Heringa
2018 J jnl
iTOP: inferring the topology of omics data.
Bioinform.
Nanne Aben, Johan A. Westerhuis, Yipeng Song, Henk A. L. Kiers, Magali Michaut, Age K. Smilde, Lodewyk F. A. Wessels
2017 J jnl
Metabolomics variable selection and classification in the presence of observations below the detection limit using an extension of ERp.
BMC Bioinform.
Mari van Reenen, Johan A. Westerhuis, Carolus J. Reinecke, J. Hendrik Venter
2016 J jnl
Separating common from distinctive variation.
BMC Bioinform.
Frans M. van der Kloet, Patricia Sebastián-León, Ana Conesa, Age K. Smilde, Johan A. Westerhuis
2016 J jnl
Variable selection for binary classification using error rate
BMC Bioinform.
Mari van Reenen, Carolus J. Reinecke, Johan A. Westerhuis, J. Hendrik Venter
2015 J jnl
Using Petri nets for experimental design in a multi-organ elimination pathway.
Comput. Biol. Medicine
Polina Reshetova, Age K. Smilde, Johan A. Westerhuis, Antoine H. C. van Kampen
2014 J jnl
How informative is your kinetic model?: using resampling methods for model invalidation.
BMC Syst. Biol.
Dicle Hasdemir, Huub C. J. Hoefsloot, Johan A. Westerhuis, Age K. Smilde
2014 J jnl
Use of prior knowledge for the analysis of high-throughput transcriptomics and metabolomics data.
BMC Syst. Biol.
Polina Reshetova, Age K. Smilde, Antoine H. C. van Kampen, Johan A. Westerhuis
2007 J jnl
Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA.
Bioinform.
María José Nueda, Ana Conesa, Johan A. Westerhuis, Huub C. J. Hoefsloot, Age K. Smilde, Manuel Talón, Alberto Ferrer
2007 J jnl
Statistical validation of megavariate effects in ASCA.
BMC Bioinform.
Daniel J. Vis, Johan A. Westerhuis, Age K. Smilde, Jan van der Greef
2006 J jnl
Single channel event (SCE) for managing sensor failures in MSPC.
Comput. Chem. Eng.
Henk-Jan Ramaker, Eric N. M. van Sprang, Johan A. Westerhuis, Age K. Smilde