Joel T. Dudley

39 papers A 1Misc 11Journal 25Unranked 2
YearRankTypeTitle / Venue / Authors
2021 J jnl
Phe2vec: Automated disease phenotyping based on unsupervised embeddings from electronic health records.
Patterns
Jessica K. De Freitas, Kipp W. Johnson, Eddye Golden, Girish N. Nadkarni, Joel T. Dudley, Erwin P. Bottinger, Benjamin S. Glicksberg, Riccardo Miotto
2021 J jnl
Predictive Modelling of Susceptibility to Substance Abuse, Mortality and Drug-Drug Interactions in Opioid Patients.
Frontiers Artif. Intell.
Ramya Dhatri Vunikili, Benjamin S. Glicksberg, Kipp W. Johnson, Joel T. Dudley, Lakshminarayanan Subramanian, Khader Shameer
2020 Misc conf
Automated Phenotyping of Patients with Non-Alcoholic Fatty Liver Disease Reveals Clinically RelevantDisease Subtypes.
PSB
Maxence Vandromme, Tomi Jun, Ponni Perumalswami, Joel T. Dudley, Andrea Branch, Li Li
2020 J jnl
Deep Representation Learning of Electronic Health Records to Unlock Patient Stratification at Scale.
CoRR
Isotta Landi, Benjamin S. Glicksberg, Hao-Chih Lee, Sarah T. Cherng, Giulia Landi, Matteo Danieletto, Joel T. Dudley, Cesare Furlanello, Riccardo Miotto
2020 J jnl
Deep representation learning of electronic health records to unlock patient stratification at scale.
npj Digit. Medicine
Isotta Landi, Benjamin S. Glicksberg, Hao-Chih Lee, Sarah T. Cherng, Giulia Landi, Matteo Danieletto, Joel T. Dudley, Cesare Furlanello, Riccardo Miotto
2020 J jnl
Identification of therapeutic targets from genetic association studies using hierarchical component analysis.
BioData Min.
Hao-Chih Lee, Osamu Ichikawa, Benjamin S. Glicksberg, Aparna A. Divaraniya, Christine E. Becker, Pankaj Agarwal, Joel T. Dudley
2020 Misc conf
Scaling Structural Learning with NO-BEARS to Infer Causal Transcriptome Networks.
PSB
Hao-Chih Lee, Matteo Danieletto, Riccardo Miotto, Sarah T. Cherng, Joel T. Dudley
2020 J jnl
Sepsis in the era of data-driven medicine: personalizing risks, diagnoses, treatments and prognoses.
Briefings Bioinform.
Andrew C. Liu, Krishna Patel, Ramya Dhatri Vunikili, Kipp W. Johnson, Fahad Jibrin Abdu, Shivani Kamath Belman, Benjamin S. Glicksberg, Pratyush Tandale, Roberto Fontanez, Oommen K. Mathew, Andrew Kasarskis, Priyabrata Mukherjee, Lakshminarayanan Subramanian, Joel T. Dudley, Khader Shameer
2020 J jnl
Sleep in the Natural Environment: A Pilot Study.
Sensors
Fayzan F. Chaudhry, Matteo Danieletto, Eddye Golden, Jerome R. Scelza, Greg Botwin, Mark M. Shervey, Jessica K. De Freitas, Ishan Paranjpe, Girish N. Nadkarni, Riccardo Miotto, Patricia Glowe, Greg Stock, Bethany Percha, Noah Zimmerman, Joel T. Dudley, Benjamin S. Glicksberg
2019 J jnl
CANDI: an R package and Shiny app for annotating radiographs and evaluating computer-aided diagnosis.
Bioinform.
Marcus A. Badgeley, Manway Liu, Benjamin S. Glicksberg, Mark M. Shervey, John R. Zech, Khader Shameer, Joseph Lehar, Eric K. Oermann, Michael V. McConnell, Thomas M. Snyder, Joel T. Dudley
2019 J jnl
Deep learning predicts hip fracture using confounding patient and healthcare variables.
npj Digit. Medicine
Marcus A. Badgeley, John R. Zech, Luke Oakden-Rayner, Benjamin S. Glicksberg, Manway Liu, William Gale, Michael V. McConnell, Bethany Percha, Thomas M. Snyder, Joel T. Dudley
2019 — conf
Enhancing high-content imaging for studying microtubule networks at large-scale.
MLHC
Hao-Chih Lee, Sarah T. Cherng, Riccardo Miotto, Joel T. Dudley
2019 J jnl
Enhancing high-content imaging for studying microtubule networks at large-scale.
CoRR
Hao-Chih Lee, Sarah T. Cherng, Riccardo Miotto, Joel T. Dudley
2019 Misc conf
Evaluation of patient re-identification using laboratory test orders and mitigation via latent space variables.
PSB
Kipp W. Johnson, Jessica K. De Freitas, Benjamin S. Glicksberg, Jason R. Bobe, Joel T. Dudley
2019 J jnl
Natural Language Processing of Clinical Notes on Chronic Diseases: Systematic Review.
CoRR
Seyedmostafa Sheikhalishahi, Riccardo Miotto, Joel T. Dudley, Alberto Lavelli, Fabio Rinaldi, Venet Osmani
2019 J jnl
PatientExploreR: an extensible application for dynamic visualization of patient clinical history from electronic health records in the OMOP common data model.
Bioinform.
Benjamin S. Glicksberg, Boris Oskotsky, Phyllis M. Thangaraj, Nicholas Giangreco, Marcus A. Badgeley, Kipp W. Johnson, Debajyoti Datta, Vivek A. Rudrapatna, Nadav Rappoport, Mark M. Shervey, Riccardo Miotto, Theodore C. Goldstein, Eugenia Rutenberg, Remi Frazier, Nelson Lee, Sharat Israni, Rick Larsen, Bethany Percha, Li Li, Joel T. Dudley, Nicholas P. Tatonetti, Atul J. Butte
2019 J jnl
Scaling structural learning with NO-BEARS to infer causal transcriptome networks.
CoRR
Hao-Chih Lee, Matteo Danieletto, Riccardo Miotto, Sarah T. Cherng, Joel T. Dudley
2018 Misc conf
Automated disease cohort selection using word embeddings from Electronic Health Records.
PSB
Benjamin S. Glicksberg, Riccardo Miotto, Kipp W. Johnson, Khader Shameer, Li Li, Rong Chen, Joel T. Dudley
2018 Misc conf
Causal inference on electronic health records to assess blood pressure treatment targets: An application of the parametric g formula.
PSB
Kipp W. Johnson, Benjamin S. Glicksberg, Rachel Hodos, Khader Shameer, Joel T. Dudley
2018 J jnl
Deep Learning Predicts Hip Fracture using Confounding Patient and Healthcare Variables.
CoRR
Marcus A. Badgeley, John R. Zech, Luke Oakden-Rayner, Benjamin S. Glicksberg, Manway Liu, William Gale, Michael V. McConnell, Beth Percha, Thomas M. Snyder, Joel T. Dudley
2018 J jnl
Deep learning for healthcare: review, opportunities and challenges.
Briefings Bioinform.
Riccardo Miotto, Fei Wang, Shuang Wang, Xiaoqian Jiang, Joel T. Dudley
2018 Misc conf
Loss-of-function of neuroplasticity-related genes confers risk for human neurodevelopmental disorders.
PSB
Milo R. Smith, Benjamin S. Glicksberg, Li Li, Rong Chen, Hirofumi Morishita, Joel T. Dudley
2018 J jnl
Pharmacological risk factors associated with hospital readmission rates in a psychiatric cohort identified using prescriptome data mining.
BMC Medical Informatics Decis. Mak.
Khader Shameer, M. Mercedes Perez-Rodriguez, Roy Bachar, Li Li, Amy Johnson, Kipp W. Johnson, Benjamin S. Glicksberg, Milo R. Smith, Ben Readhead, Joseph Scarpa, Jebakumar Jebakaran, Patricia H. Kovatch, Sabina Lim, Wayne K. Goodman, David L. Reich, Andrew Kasarskis, Nicholas P. Tatonetti, Joel T. Dudley
2018 J jnl
Reflecting health: smart mirrors for personalized medicine.
npj Digit. Medicine
Riccardo Miotto, Matteo Danieletto, Jerome R. Scelza, Brian A. Kidd, Joel T. Dudley
2018 J jnl
Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning.
Briefings Bioinform.
Khader Shameer, Benjamin S. Glicksberg, Rachel Hodos, Kipp W. Johnson, Marcus A. Badgeley, Ben Readhead, Max S. Tomlinson, Timothy O'Connor, Riccardo Miotto, Brian A. Kidd, Rong Chen, Avi Ma'ayan, Joel T. Dudley
2018 J jnl
Uncovering exposures responsible for birth season - disease effects: a global study.
J. Am. Medical Informatics Assoc.
Mary Regina Boland, Pradipta Parhi, Li Li, Riccardo Miotto, Robert J. Carroll, Usman Iqbal, Phung-Anh (Alex) Nguyen, Martijn J. Schuemie, Seng Chan You, Donahue Smith, Sean D. Mooney, Patrick B. Ryan, Yu-Chuan (Jack) Li, Rae Woong Park, Joshua C. Denny, Joel T. Dudley, George Hripcsak, Pierre Gentine, Nicholas P. Tatonetti
2017 — conf
Application of I-COMO device towards geographic disease enrichment pattern revealed from electronic medical record at a large Urban academic medical center.
PervasiveHealth
Matteo Danieletto, Li Li, Joel T. Dudley
2017 J jnl
Automated cell type discovery and classification through knowledge transfer.
Bioinform.
Hao-Chih Lee, Roman Kosoy, Christine E. Becker, Joel T. Dudley, Brian A. Kidd
2017 Misc conf
Exploring the Reproducibility of Probabilistic Causal Molecular Network Models>.
PSB
Ariella Cohain, Aparna A. Divaraniya, Kuixi Zhu, Joseph R. Scarpa, Andrew Kasarskis, Jun Zhu, Rui Chang, Joel T. Dudley, Eric E. Schadt
2017 J jnl
Predicting age by mining electronic medical records with deep learning characterizes differences between chronological and physiological age.
J. Biomed. Informatics
Zichen Wang, Li Li, Benjamin S. Glicksberg, Ariel Israel, Joel T. Dudley, Avi Ma'ayan
2017 Misc conf
Predictive Modeling of Hospital Readmission Rates Using Electronic Medical Record-Wide Machine Learning: A Case-Study Using Mount Sinai Heart Failure Cohort.
PSB
Khader Shameer, Kipp W. Johnson, Alexandre Yahi, Riccardo Miotto, Li Li, Doran Ricks, Jebakumar Jebakaran, Patricia H. Kovatch, Partho P. Sengupta, Annetine Gelijns, Alan Moskovitz, Bruce Darrow, David L. Reich, Andrew Kasarskis, Nicholas P. Tatonetti, Deborah F. Pinney, Joel T. Dudley
2017 J jnl
Translational bioinformatics in the era of real-time biomedical, health care and wellness data streams.
Briefings Bioinform.
Khader Shameer, Marcus A. Badgeley, Riccardo Miotto, Benjamin S. Glicksberg, Joseph W. Morgan, Joel T. Dudley
2016 J jnl
Comparative analyses of population-scale phenomic data in electronic medical records reveal race-specific disease networks.
Bioinform.
Benjamin S. Glicksberg, Li Li, Marcus A. Badgeley, Khader Shameer, Roman Kosoy, Noam D. Beckmann, Nam Pho, Jörg Hakenberg, Meng Ma, Kristin L. Ayers, Gabriel E. Hoffman, Shuyu Dan Li, Eric E. Schadt, Chirag J. Patel, Rong Chen, Joel T. Dudley
2016 A conf
Deep Learning to Predict Patient Future Diseases from the Electronic Health Records.
ECIR
Riccardo Miotto, Li Li, Joel T. Dudley
2016 J jnl
Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment.
Briefings Bioinform.
Khader Shameer, Lokesh P. Tripathi, Krishna R. Kalari, Joel T. Dudley, Ramanathan Sowdhamini
2015 Misc conf
An Integrative Pipeline for Multi-Modal Discovery of Disease Relationships.
Pacific Symposium on Biocomputing
Benjamin S. Glicksberg, Li Li, Wei-Yi Cheng, Khader Shameer, Jörg Hakenberg, Rafael Castellanos, Meng Ma, Lisong Shi, Hardik Shah, Joel T. Dudley, Rong Chen
2015 Misc conf
Session introduction.
Pacific Symposium on Biocomputing
Joel T. Dudley, Jennifer Listgarten, Oliver Stegle, Steven E. Brenner, Leopold Parts
2012 Misc conf
Interpretome: A Freely Available, Modular, and Secure Personal Genome Interpretation Engine.
Pacific Symposium on Biocomputing
Konrad J. Karczewski, Robert P. Tirrell, Pablo Cordero, Nicholas P. Tatonetti, Joel T. Dudley, Keyan Salari, Michael Snyder, Russ B. Altman, Stuart K. Kim
2011 J jnl
Comparison of automated and human assignment of MeSH terms on publicly-available molecular datasets.
J. Biomed. Informatics
David Ruau, Michael Mbagwu, Joel T. Dudley, Vijay Krishnan, Atul J. Butte